Rorug02G0653800

Basic 7S

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016359
Physical Location & Seq
Forward (+)
76092203 .. 76097801
5599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0653800.1

Sequence Viewer

Length: 2475 bp
ATGGCTCTGCTCCTTCCAATCCCAATCCCAATCCATGGCGTTTCTTCTAGGTCGAGGTCGGCGAGTCGGCTGTGCAAGGTTTGGGGTTGGGGACTGTTGAAAATCCAAATCCAGAGAGGGGGCCGCACCCAGACGCCGACGCCGACGAAGAACAGCCTGGGCCTTTCCAATTCCAATTCCACTTTCACGAAAACAACCAAATCGAGCAAAAAGCGACGGGACGCGGCTGTGGAGGCAGAGTCGGACGCCATATCGATTCTGAACGAGAGAATTCGGCGCGAGCAGAGAAAGAAATCGTCGGACTCGGAGAGGTCTCCGATGGAGGCGGAGGAGGCAGACAAGTACTTGGAGCTGGTGAAGCAGCAGCAGCAGAGGGGCCTCCAGAAGCTCAAGGGAGACCTTAGTTACAAGGTCGATCCTTACACTCTTCGTTCCGGTGATTATGTGGTCCATAAGAAGGTCGGCATTGGTCGATTCGTTGGGATTAAATTCGACAATGCTCCTGCTTCCACGGACCCTATTGAATACGTCTTCATTGAGTATGCTGATGGCATGGCTAAGCTTCCTGTTAAGCAGGCCTCTCGCTTGCTCTATCGTTACAATCTCCCCAACGAAAACAAAAAACCTCACACATTGAGCAAACTGAACGACACCAGTGTGTGGGAGAGAAGAAAGACCAAGGGAAAGATTGCCATTCAGAAAATGGTTGTTGATCTGATGGAGTTGTATTTACACAGGCTCAAACAAACACGCCCTCCCTACCCTCTTACTCCTGCCATGGCTCACTTTGTTTCTCAGTTTCCGTATGAGCCTACTCCTGATCAAAAGCAGGCTTTCATTGATGTTGAGAAAGATTTAACAGGGAGGGAAACTCCAATGGACCGCTTAATTTGTGGAGATGTTGGCTTTGGCAAAACTGAAGTAGCACTCCGTGCCATCTTTTGTGTAGTTTCCGCAGGGAAGCAAGCCATGGTTCTTGCACCCACAATTGTTTTAGCCAAGCAACATTTTGAAGTTATCTCACAGCGATTTTCTATCTACCCAAATATCAACGTTGGACTTCTTAGCAGGTTTCAGACTAAATCAGAGAAAGATGAGCATCTAGACATGATAAAGAATGGTCATTTGGACATAATTGTTGGGACACACTCACTTCTTGGAAGTCGTGTTGTGTATAATAATCTAGGCCTGCTTGTCGTTGATGAAGAACAGAGGTTTGGCGTCAAACAGAAAGAGAAGATTGCTTCATTCAAAACATCAGTTGATGTTCTTACTCTATCTGCAACACCTATACCGCGAACCCTTTATTTAGCATTGACTGGTTTTCGTGATGCTAGCTTGATTTCAACTCCACCTCCAGAAAGAGTCCCTATAAGAACCCATCTCTCGGCATACAGTAAAGAAAAGGTATTATCAGCAATTAAGTATGAGCTGGAACGAGGTGGCCAAGTATTTTATGTTTTGCCTCGTATCAAAGGACTTGAAGAAGTGATGGGTTTTCTTGAACAGTCGTTTCCTGATGTTGAAATAGCTATTGCACACGGGAAGCAATATTCAAAGCAGCTAGAGGAAACCATGGAGAAATTTTCACAAGGTGAAATCAAGATTCTTACATGCACTAATATAGTAGAAAGTGGGCTTGACATTCAGAATGCAAACACCATTATAATTCAGGATGTTCAACAATTTGGCCTAGCACAGTTGTATCAGCTGCGGGGAAGGGTGGGGAGGGCAGATAAGGAAGCTCACGCACACTTGTTTTATCCAGAGAAGTCACTTCTAACTGATCAAGCGTTGGAGAGACTTGCAGCTCTTGAGGAATGCTGTCAACTTGGGCAAGGTTTCCAACTTGCAGAGAGGGACATGGGAATAAGAGGCTTTGGTACCATCTTTGGTGAGCAGCAGACTGGGGATGTTGGAAATGTTGGCATTGATCTCTTCTTTGAAATGCTGTTTGAGAGCTTGTCTAAGGTTGATGAGCATCGAGTAGTTTCAGTTCCTTACTGGTCCGTTGAGATTGATATGAATATAAATCCTCATCTCCCTTCTGAGTACATAAATAATCTCGAGAATCCCATGGAGATAATTCATGAAGCTGAGAAAGCTGCAGAGAAGGATATCTGGAGTTTGATGCAATATACTGAGAATTTGCGGCGTCAATATGGAAAGGAGCCACACTCCATGGAAATTTTATTAAAGAAGCTTTATGTGAGGAGAATGGCAGCAGACATTGGAATAACCAAGATATATGCTTCTGGAAAGATGGTTTTTATGAAAACAGTTATGAATAAACATGTTTTCAACCTGATAACAGATTCAGTGGTTTCTGATGTCCACCGAAATTCTTTGGTATTTGAGGGTGACCAGATCAAGGCAGAACTTCTTCTAGAATTGCCAAGAGAACAACTCCTAAACTGGATATTTCAATGTTTGGCTGGACTACATGCTTCCTTACCTTCCCTCATAAAGTACTAG

Protein Analysis

824

Amino Acids

93.32

Weight (kDa)

8.81

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CarD_TRCF_RID PF02559 143 - 200 1.5e-10 CarD-like/TRCF RID domain
ResIII PF04851 270 - 430 3.3e-09 Type III restriction enzyme, res subunit
DEAD PF00270 272 - 434 1.7e-23 DEAD/DEAH box helicase
Helicase_C PF00271 472 - 578 3.1e-20 Helicase conserved C-terminal domain
TRCF PF03461 676 - 762 1.3e-06 TRCF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016359)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05510
malus_domestica MD04G1208100.v1.1 MD12G1222100.v1.1
prunus_persica Prupe.6G329000_v2.0.a1
pyrus_communis pycom12g20830
rosa_chinensis RchiOBHm_Chr3g0454271
rosa_laevigata RLG00000025468
rosa_roxburghii Rroxscaffold_165G00437090 Rroxscaffold_6G00425250
rosa_rugosa Rorug02G0653800
rosa_samantha Rh3AG057600 Rh3BG059300 Rh3CG058500 Rh3DG059800
rosa_wichuraiana Rw3G004420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1667
Acc36I ACCTGC 1 cut(s) 1059
Acc65I GGTACC 1 cut(s) 1883
AccB1I GGYRCC 1 cut(s) 1883
AccB7I CCANNNNNTGG 2 cut(s) 35, 660
AccII CGCG 3 cut(s) 224, 279, 1297
AciI CCGC 8 cut(s) 124, 224, 326, 883, 954, 1295, 1714, 2152
AclI AACGTT 1 cut(s) 1053
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 1 cut(s) 1444
AcsI RAATTY 6 cut(s) 270, 488, 1583, 2146, 2187, 2341
AcuI CTGAAG 1 cut(s) 939
AcyI GRCGYC 5 cut(s) 134, 140, 246, 1221, 2155
AdeI CACNNNGTG 2 cut(s) 932, 1595
AfaI GTAC 4 cut(s) 344, 1885, 2054, 2471
AfiI CCNNNNNNNGG 6 cut(s) 35, 118, 457, 660, 1387, 2371
AflIII ACRYGT 1 cut(s) 2293
AjnI CCWGG 1 cut(s) 156
AjuI GAANNNNNNNTTGG 6 cut(s) 167, 199, 1109, 1141, 1200, 1232
AleI CACNNNNGTG 1 cut(s) 656
Alw26I GTCTC 3 cut(s) 318, 390, 1795
AlwI GGATC 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 2066
AoxI GGCC 7 cut(s) 121, 160, 376, 576, 1186, 1444, 1690
ApeKI GCWGC 9 cut(s) 361, 364, 367, 1561, 1711, 1808, 1900, 2105, 2222
ApoI RAATTY 6 cut(s) 270, 488, 1583, 2146, 2187, 2341
Asp700I GAANNNNTTC 1 cut(s) 2382
Asp718I GGTACC 1 cut(s) 1883
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 7 cut(s) 121, 160, 376, 448, 514, 880, 2007
AsuHPI GGTGA 5 cut(s) 367, 449, 1607, 1907, 2372
AsuNHI GCTAGC 1 cut(s) 1334
AvaI CYCGRG 1 cut(s) 2066
AvaII GGWCC 4 cut(s) 448, 514, 880, 2007
BaeI ACNNNNGTAYC 2 cut(s) 1688, 1721
BalI TGGCCA 1 cut(s) 1446
BanI GGYRCC 1 cut(s) 1883
BbsI GAAGAC 1 cut(s) 523
BbvI GCAGC 9 cut(s) 373, 376, 379, 1573, 1698, 1820, 1912, 2092, 2234
BccI CCATC 8 cut(s) 313, 542, 712, 944, 1389, 1486, 1895, 2257
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 2 cut(s) 820, 1786
BcoDI GTCTC 3 cut(s) 318, 390, 1795
BfaI CTAG 8 cut(s) 48, 1103, 1184, 1335, 1565, 1694, 2387, 2473
BfmI CTRYAG 1 cut(s) 2106
BfuAI ACCTGC 1 cut(s) 1059
BlpI GCTNAGC 1 cut(s) 558
BmcAI AGTACT 2 cut(s) 344, 2471
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 4 cut(s) 448, 514, 880, 2007
BmeT110I CYCGRG 1 cut(s) 2066
BmgT120I GGNCC 7 cut(s) 121, 160, 376, 448, 514, 880, 2007
BmiI GGNNCC 5 cut(s) 122, 377, 516, 1885, 2172
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 1917
BmsI GCATC 4 cut(s) 1108, 1321, 1990, 2121
BmtI GCTAGC 1 cut(s) 1338
BmuI ACTGGG 1 cut(s) 1917
BpiI GAAGAC 1 cut(s) 523
BplI GAGNNNNNCTC 6 cut(s) 856, 888, 2162, 2194, 2391, 2423
BpmI CTGGAG 3 cut(s) 365, 1341, 2143
Bpu1102I GCTNAGC 1 cut(s) 558
BpuEI CTTGAG 2 cut(s) 374, 1835
Bsa29I ATCGAT 1 cut(s) 254
BsaBI GATNNNNATC 2 cut(s) 1098, 1980
BsaHI GRCGYC 5 cut(s) 134, 140, 246, 1221, 2155
BsaI GGTCTC 2 cut(s) 318, 390
BsaJI CCNNGG 9 cut(s) 34, 157, 510, 678, 777, 969, 1575, 2076, 2181
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 6 cut(s) 224, 254, 739, 769, 1339, 1369
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 118, 457, 660, 1387, 2371
Bse1I ACTGG 5 cut(s) 654, 1324, 1912, 2009, 2420
Bse8I GATNNNNATC 2 cut(s) 1098, 1980
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 254
BseDI CCNNGG 9 cut(s) 34, 157, 510, 678, 777, 969, 1575, 2076, 2181
BseGI GGATG 2 cut(s) 1681, 1918
BseJI GATNNNNATC 2 cut(s) 1098, 1980
BseLI CCNNNNNNNGG 6 cut(s) 35, 118, 457, 660, 1387, 2371
BseMII CTCAG 4 cut(s) 809, 2040, 2088, 2133
BseNI ACTGG 5 cut(s) 654, 1324, 1912, 2009, 2420
BseRI GAGGAG 2 cut(s) 344, 2227
BseXI GCAGC 9 cut(s) 373, 376, 379, 1573, 1698, 1820, 1912, 2092, 2234
Bsh1236I CGCG 3 cut(s) 224, 279, 1297
BshFI GGCC 7 cut(s) 123, 162, 378, 578, 1188, 1446, 1692
BshNI GGYRCC 1 cut(s) 1883
BshVI ATCGAT 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 2066
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 5 cut(s) 105, 233, 1156, 1352, 1874
BslI CCNNNNNNNGG 6 cut(s) 35, 118, 457, 660, 1387, 2371
BsmAI GTCTC 3 cut(s) 318, 390, 1795
BsmFI GGGAC 5 cut(s) 105, 233, 1156, 1352, 1874
BsmI GAATGC 2 cut(s) 1657, 1826
BsnI GGCC 7 cut(s) 123, 162, 378, 578, 1188, 1446, 1692
Bso31I GGTCTC 2 cut(s) 318, 390
BsoBI CYCGRG 1 cut(s) 2066
Bsp143I GATC 6 cut(s) 415, 712, 820, 1786, 1933, 2367
Bsp1720I GCTNAGC 1 cut(s) 558
Bsp19I CCATGG 6 cut(s) 34, 777, 969, 1575, 2076, 2181
BspACI CCGC 8 cut(s) 124, 224, 326, 883, 954, 1295, 1714, 2152
BspANI GGCC 7 cut(s) 123, 162, 378, 578, 1188, 1446, 1692
BspCNI CTCAG 4 cut(s) 808, 2041, 2089, 2134
BspDI ATCGAT 1 cut(s) 254
BspFNI CGCG 3 cut(s) 224, 279, 1297
BspHI TCATGA 1 cut(s) 2089
BspLI GGNNCC 5 cut(s) 122, 377, 516, 1885, 2172
BspMAI CTGCAG 1 cut(s) 2110
BspMI ACCTGC 1 cut(s) 1059
BspOI GCTAGC 1 cut(s) 1338
BspPI GGATC 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 1883
BspTNI GGTCTC 2 cut(s) 318, 390
BsrI ACTGG 5 cut(s) 654, 1324, 1912, 2009, 2420
BssECI CCNNGG 9 cut(s) 34, 157, 510, 678, 777, 969, 1575, 2076, 2181
BssMI GATC 6 cut(s) 415, 712, 820, 1786, 1933, 2367
BssNI GRCGYC 5 cut(s) 134, 140, 246, 1221, 2155
BssT1I CCWWGG 7 cut(s) 34, 678, 777, 969, 1575, 2076, 2181
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 5 cut(s) 96, 1397, 1509, 1701, 2281
Bst6I CTCTTC 2 cut(s) 432, 1943
BstACI GRCGYC 5 cut(s) 134, 140, 246, 1221, 2155
BstAPI GCANNNNNTGC 1 cut(s) 932
BstC8I GCNNGC 7 cut(s) 281, 576, 587, 831, 966, 1190, 1336
BstDEI CTNAG 8 cut(s) 401, 558, 795, 1064, 1968, 2049, 2097, 2142
BstDSI CCRYGG 7 cut(s) 34, 510, 777, 969, 1575, 2076, 2181
BstEII GGTNACC 1 cut(s) 2360
BstF5I GGATG 2 cut(s) 1681, 1918
BstFNI CGCG 3 cut(s) 224, 279, 1297
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 6 cut(s) 418, 715, 823, 1789, 1936, 2370
BstMAI GTCTC 3 cut(s) 318, 390, 1795
BstMBI GATC 6 cut(s) 415, 712, 820, 1786, 1933, 2367
BstMWI GCNNNNNNNGC 6 cut(s) 233, 332, 358, 367, 932, 2102
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 3 cut(s) 1617, 2297, 2447
BstPI GGTNACC 1 cut(s) 2360
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 2106
BstUI CGCG 3 cut(s) 224, 279, 1297
BstV1I GCAGC 9 cut(s) 373, 376, 379, 1573, 1698, 1820, 1912, 2092, 2234
BstV2I GAAGAC 1 cut(s) 523
Bsu15I ATCGAT 1 cut(s) 254
BsuRI GGCC 7 cut(s) 123, 162, 378, 578, 1188, 1446, 1692
BsuTUI ATCGAT 1 cut(s) 254
BtgI CCRYGG 7 cut(s) 34, 510, 777, 969, 1575, 2076, 2181
BtsCI GGATG 2 cut(s) 1681, 1918
BtsIMutI CAGTG 2 cut(s) 661, 2325
BveI ACCTGC 1 cut(s) 1059
Cac8I GCNNGC 7 cut(s) 281, 576, 587, 831, 966, 1190, 1336
CciI TCATGA 1 cut(s) 2089
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 7 cut(s) 121, 160, 376, 448, 514, 880, 2007
ClaI ATCGAT 1 cut(s) 254
CseI GACGC 6 cut(s) 142, 148, 230, 254, 1210, 2144
Csp6I GTAC 4 cut(s) 343, 1884, 2053, 2470
CviQI GTAC 4 cut(s) 343, 1884, 2053, 2470
DdeI CTNAG 8 cut(s) 401, 558, 795, 1064, 1968, 2049, 2097, 2142
DpnI GATC 6 cut(s) 417, 714, 822, 1788, 1935, 2369
DpnII GATC 6 cut(s) 415, 712, 820, 1786, 1933, 2367
DraIII CACNNNGTG 2 cut(s) 932, 1595
EaeI YGGCCR 1 cut(s) 1444
Eam1104I CTCTTC 2 cut(s) 432, 1943
EarI CTCTTC 2 cut(s) 432, 1943
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 7 cut(s) 34, 678, 777, 969, 1575, 2076, 2181
Eco147I AGGCCT 2 cut(s) 578, 1188
Eco31I GGTCTC 2 cut(s) 318, 390
Eco32I GATATC 1 cut(s) 2119
Eco47I GGWCC 4 cut(s) 448, 514, 880, 2007
Eco57I CTGAAG 1 cut(s) 939
Eco88I CYCGRG 1 cut(s) 2066
Eco91I GGTNACC 1 cut(s) 2360
EcoO109I RGGNCCY 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 2360
EcoRI GAATTC 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 2119
EcoT14I CCWWGG 7 cut(s) 34, 678, 777, 969, 1575, 2076, 2181
ErhI CCWWGG 7 cut(s) 34, 678, 777, 969, 1575, 2076, 2181
FaqI GGGAC 5 cut(s) 105, 233, 1156, 1352, 1874
FauI CCCGC 1 cut(s) 1707
FbaI TGATCA 2 cut(s) 820, 1786
FokI GGATG 2 cut(s) 1688, 1925
FspBI CTAG 8 cut(s) 48, 1103, 1184, 1335, 1565, 1694, 2387, 2473
GlaI GCGC 1 cut(s) 278
GsuI CTGGAG 3 cut(s) 365, 1341, 2143
HaeIII GGCC 7 cut(s) 123, 162, 378, 578, 1188, 1446, 1692
HapII CCGG 1 cut(s) 435
HgaI GACGC 6 cut(s) 142, 148, 230, 254, 1210, 2144
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 5 cut(s) 134, 140, 246, 1221, 2155
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 1829
HindII GTYRAC 1 cut(s) 1829
HindIII AAGCTT 2 cut(s) 560, 2201
HinfI GANTC 9 cut(s) 64, 239, 256, 302, 474, 1365, 1606, 2071, 2315
HpaII CCGG 1 cut(s) 435
HphI GGTGA 5 cut(s) 367, 449, 1607, 1907, 2372
Hpy166II GTNNAC 2 cut(s) 1829, 2335
Hpy8I GTNNAC 2 cut(s) 1829, 2335
Hpy99I CGWCG 4 cut(s) 142, 148, 219, 301
HpyAV CCTTC 6 cut(s) 23, 451, 1713, 2055, 2107, 2466
HpyCH4III ACNGT 5 cut(s) 96, 1397, 1509, 1701, 2281
HpyCH4IV ACGT 2 cut(s) 528, 1053
HpyF10VI GCNNNNNNNGC 6 cut(s) 233, 332, 358, 367, 932, 2102
HpyF3I CTNAG 8 cut(s) 401, 558, 795, 1064, 1968, 2049, 2097, 2142
HpySE526I ACGT 2 cut(s) 528, 1053
Hsp92I GRCGYC 5 cut(s) 134, 140, 246, 1221, 2155
HspAI GCGC 1 cut(s) 277
KpnI GGTACC 1 cut(s) 1887
Ksp22I TGATCA 2 cut(s) 820, 1786
Kzo9I GATC 6 cut(s) 415, 712, 820, 1786, 1933, 2367
LmnI GCTCC 4 cut(s) 15, 349, 505, 2170
Lsp1109I GCAGC 9 cut(s) 373, 376, 379, 1573, 1698, 1820, 1912, 2092, 2234
LweI GCATC 4 cut(s) 1108, 1321, 1990, 2121
MaeI CTAG 8 cut(s) 48, 1103, 1184, 1335, 1565, 1694, 2387, 2473
MaeII ACGT 2 cut(s) 528, 1053
MaeIII GTNAC 4 cut(s) 404, 596, 1773, 2360
MalI GATC 6 cut(s) 417, 714, 822, 1788, 1935, 2369
MboI GATC 6 cut(s) 415, 712, 820, 1786, 1933, 2367
MfeI CAATTG 1 cut(s) 987
MlsI TGGCCA 1 cut(s) 1446
MluNI TGGCCA 1 cut(s) 1446
MlyI GAGTC 4 cut(s) 73, 248, 296, 1374
MmeI TCCRAC 6 cut(s) 222, 279, 1036, 1776, 1870, 1897
Mox20I TGGCCA 1 cut(s) 1446
MroXI GAANNNNTTC 1 cut(s) 2382
MscI TGGCCA 1 cut(s) 1446
MseI TTAA 6 cut(s) 486, 570, 857, 887, 1422, 2195
MslI CAYNNNNRTG 1 cut(s) 656
Msp20I TGGCCA 1 cut(s) 1446
MspA1I CMGCKG 1 cut(s) 1711
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 158
MunI CAATTG 1 cut(s) 987
Mva1269I GAATGC 2 cut(s) 1657, 1826
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 3 cut(s) 224, 279, 1297
MwoI GCNNNNNNNGC 6 cut(s) 233, 332, 358, 367, 932, 2102
NcoI CCATGG 6 cut(s) 34, 777, 969, 1575, 2076, 2181
NdeII GATC 6 cut(s) 415, 712, 820, 1786, 1933, 2367
NheI GCTAGC 1 cut(s) 1334
NlaIV GGNNCC 5 cut(s) 122, 377, 516, 1885, 2172
NmeAIII GCCGAG 1 cut(s) 1367
NmuCI GTSAC 2 cut(s) 1773, 2360
NspI RCATGY 3 cut(s) 1617, 2297, 2447
OliI CACNNNNGTG 1 cut(s) 656
PaeR7I CTCGAG 1 cut(s) 2066
PagI TCATGA 1 cut(s) 2089
PceI AGGCCT 2 cut(s) 578, 1188
PciI ACATGT 1 cut(s) 2293
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 140
PctI GAATGC 2 cut(s) 1657, 1826
PdmI GAANNNNTTC 1 cut(s) 2382
PfeI GAWTC 5 cut(s) 256, 474, 1606, 2071, 2315
PflMI CCANNNNNTGG 2 cut(s) 35, 660
PleI GAGTC 4 cut(s) 72, 247, 296, 1373
PpsI GAGTC 4 cut(s) 72, 247, 296, 1373
PscI ACATGT 1 cut(s) 2293
PsiI TTATAA 1 cut(s) 1667
Psp1406I AACGTT 1 cut(s) 1053
Psp6I CCWGG 1 cut(s) 156
PspEI GGTNACC 1 cut(s) 2360
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 5 cut(s) 122, 377, 516, 1885, 2172
PspPI GGNCC 7 cut(s) 121, 160, 376, 448, 514, 880, 2007
PsrI GAACNNNNNNTAC 2 cut(s) 1980, 2012
PstI CTGCAG 1 cut(s) 2110
PvuII CAGCTG 1 cut(s) 1711
RsaI GTAC 4 cut(s) 344, 1885, 2054, 2471
RsaNI GTAC 4 cut(s) 343, 1884, 2053, 2470
RseI CAYNNNNRTG 1 cut(s) 656
SaqAI TTAA 6 cut(s) 486, 570, 857, 887, 1422, 2195
Sau3AI GATC 6 cut(s) 415, 712, 820, 1786, 1933, 2367
Sau96I GGNCC 7 cut(s) 121, 160, 376, 448, 514, 880, 2007
ScaI AGTACT 2 cut(s) 344, 2471
SchI GAGTC 4 cut(s) 73, 248, 296, 1374
ScrFI CCNGG 1 cut(s) 158
SfaNI GCATC 4 cut(s) 1108, 1321, 1990, 2121
SfcI CTRYAG 1 cut(s) 2106
Sfr274I CTCGAG 1 cut(s) 2066
SinI GGWCC 4 cut(s) 448, 514, 880, 2007
SlaI CTCGAG 1 cut(s) 2066
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 3 cut(s) 389, 1814, 2066
SmoI CTYRAG 3 cut(s) 389, 1814, 2066
SseBI AGGCCT 2 cut(s) 578, 1188
SsiI CCGC 8 cut(s) 124, 224, 326, 883, 954, 1295, 1714, 2152
SspI AATATT 1 cut(s) 1553
SspMI CTAG 8 cut(s) 48, 1103, 1184, 1335, 1565, 1694, 2387, 2473
StuI AGGCCT 2 cut(s) 578, 1188
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 7 cut(s) 34, 678, 777, 969, 1575, 2076, 2181
TaaI ACNGT 5 cut(s) 96, 1397, 1509, 1701, 2281
TaiI ACGT 2 cut(s) 531, 1056
TaqI TCGA 8 cut(s) 53, 203, 254, 414, 472, 492, 1984, 2067
TatI WGTACW 3 cut(s) 342, 2052, 2469
TauI GCSGC 3 cut(s) 126, 227, 2155
TfiI GAWTC 5 cut(s) 256, 474, 1606, 2071, 2315
Tru1I TTAA 6 cut(s) 486, 570, 857, 887, 1422, 2195
Tru9I TTAA 6 cut(s) 486, 570, 857, 887, 1422, 2195
TscAI CASTG 2 cut(s) 661, 2325
TseFI GTSAC 2 cut(s) 1773, 2360
TseI GCWGC 9 cut(s) 361, 364, 367, 1561, 1711, 1808, 1900, 2105, 2222
Tsp45I GTSAC 2 cut(s) 1773, 2360
TspDTI ATGAA 9 cut(s) 523, 826, 1218, 1236, 2039, 2078, 2106, 2288, 2300
TspGWI ACGGA 4 cut(s) 527, 792, 920, 1999
TspRI CASTG 2 cut(s) 661, 2325
Van91I CCANNNNNTGG 2 cut(s) 35, 660
VpaK11BI GGWCC 4 cut(s) 448, 514, 880, 2007
XapI RAATTY 6 cut(s) 270, 488, 1583, 2146, 2187, 2341
XbaI TCTAGA 2 cut(s) 1102, 2386
XceI RCATGY 3 cut(s) 1617, 2297, 2447
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 2066
XmnI GAANNNNTTC 1 cut(s) 2382
XspI CTAG 8 cut(s) 48, 1103, 1184, 1335, 1565, 1694, 2387, 2473
ZrmI AGTACT 2 cut(s) 344, 2471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.