MD05G1039600.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
6713527 .. 6717783
4257 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1039600.v1.1.491

Sequence Viewer

Length: 1434 bp
ATGGCGTTTCCCATAACGGCCATGAACTGTTTGGTGTTTGTCCGAGCCGCGGTTTCAGTTCTATTCCTGGGGAGGCTTGGAAGCCTAGAGCTAGCCGGTGGTGCACTGTCCATCGGCTTCACCAACATCACCGGATACTCTGTCCTGATGGGACTAGCATCCGGCCTCGAACCTGTTTGCAGCCAAGCATTCGGCAACAAGAACTATGACCTTCTCTCCCTCTCCCTCCAGCGCATGGTTTTAATCCTACTCCTGGCCGTAATCCCCATCAGCCTCCTCTGGATTAATCTCCAGTCCATCATGGTTTTCATGGGACAGGACAAGGCCATCACTGCAATGGCCGCCACCTACTGTTTGTATTCTCTCCCGGACTTGTTGACAAACACGGTCTTGCAACCTTTGAGGGTTTTTCTGAGGTCTCAGAAAGTGACCAAGCCCATGATGTATTGCTCTCTGATAGCCGTGGCGTTTCATGTGCCGTTGAACGTGGTTTTGGTGGTGGTGATGGGGCTGGGAGTGCCGGGGGTGGCCGTGGCATCGGTGCTGACGAACATGAACATGGCGGTGCTGATGGCGGGGTACGTGTGGTGGGGTTGGAGGAAGGGGGAGATGAGATGGACGTTTGGGATTGGGGATTTGTGCAGTGGGATTGGGCCGCTGTTGAAGCTGGCGGTGCCGAGCTGCTTGGCGATATGTTTGGAGTGGTGGTGGTATGAGATTGTGACTGTCATGGCTGGATATCTGCCGAATCCTACGCTGGCGGTGGCCGCCACCGGGATTCTTATTCAGACCACTAGCATGATGTACACTGTCCCTTTGGCCCTTTGTGGTTGTGTTTCTGCCAGGGTTGGGAATGAGCTTGGGTGTGGGAAGCCATACAAGGCGAAGCTAGCAGCGATGGTGGCATTGGGATGTGCATTTGTGATCGGCATCATCAACGTGACCTGGACGGTGATTCTGAGAGAGAGGTGGGCAGGCCTCTTCACCAAGGACGAGCTCGTCAAAGCCTTGGTTGCATCAGTCATGCCAATCATGGGAATTTGCGAGTTAGGCAACTGCCCCCAAACTACTGGCTGTGGCATCCTACGCGGCACGGCACGCCCGGCCGTGGGTGCCCGCATCAATTTAGGGTCGTTCTACTTTGTGGGCACCCCTGTGGCGGTCGGGCTTGCCTTCTGGCTCAAGGTAGGGTTTCCGGGGCTTTGGTTCGGGCTCTTATCTGCTCAGGTGGCATGCGCTGTGTCCATTCTGTATGTTGTGGTGGCGAGGACGGATTGGGAGGCTGAGTCTTTGAACGCCAGGATGCTGACGGGGTTAGAAATGGGTGAGTGCAGAGATAAAAGGCAAGAGCATGAGAAAGATGAAGAAGAAAGCAAAGGGTTGTTGATCAACGGTGGAGATGGTAACTGTAATAGTATAGATGAATTTATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

51.32

Weight (kDa)

8.07

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 4 - 164 5.4e-35 MatE
MatE PF01554 226 - 387 2.3e-31 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 998
AccB1I GGYRCC 3 cut(s) 673, 1112, 1148
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 2 cut(s) 50, 1089
AcoI YGGCCR 6 cut(s) 18, 255, 339, 528, 765, 1104
AcsI RAATTY 2 cut(s) 1038, 1424
AfaI GTAC 2 cut(s) 581, 806
AfiI CCNNNNNNNGG 9 cut(s) 49, 235, 253, 774, 849, 1034, 1108, 1109, 1159
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 3 cut(s) 484, 664, 1294
AjnI CCWGG 5 cut(s) 66, 252, 842, 944, 1298
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AleI CACNNNNGTG 1 cut(s) 1154
AluBI AGCT 6 cut(s) 91, 667, 681, 859, 889, 997
AluI AGCT 6 cut(s) 91, 667, 681, 859, 889, 997
Alw21I GWGCWC 2 cut(s) 106, 999
Alw26I GTCTC 1 cut(s) 423
Alw44I GTGCAC 1 cut(s) 102
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 180, 681, 893
ApoI RAATTY 2 cut(s) 1038, 1424
AseI ATTAAT 1 cut(s) 285
AspLEI GCGC 2 cut(s) 234, 1238
AspS9I GGNCC 2 cut(s) 653, 820
AsuC2I CCSGG 5 cut(s) 368, 522, 775, 1103, 1197
AsuHPI GGTGA 6 cut(s) 112, 121, 514, 964, 976, 1337
AsuNHI GCTAGC 2 cut(s) 91, 889
BaeGI GKGCMC 3 cut(s) 106, 1117, 1151
BanI GGYRCC 3 cut(s) 673, 1112, 1148
BanII GRGCYC 2 cut(s) 999, 1215
Bbv12I GWGCWC 2 cut(s) 106, 999
BbvI GCAGC 3 cut(s) 192, 668, 905
BceAI ACGGC 7 cut(s) 33, 242, 446, 463, 515, 1091, 1110
BciT130I CCWGG 5 cut(s) 68, 254, 844, 946, 1300
BciVI GTATCC 1 cut(s) 128
BclI TGATCA 1 cut(s) 1386
BcnI CCSGG 5 cut(s) 368, 522, 775, 1103, 1197
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 5 cut(s) 86, 92, 155, 795, 890
BfuI GTATCC 1 cut(s) 128
BisI GCNGC 8 cut(s) 48, 181, 342, 656, 682, 768, 894, 1090
BlsI GCNGC 8 cut(s) 49, 182, 343, 657, 683, 769, 895, 1091
BmgT120I GGNCC 2 cut(s) 653, 820
BmiI GGNNCC 3 cut(s) 675, 1114, 1150
BmsI GCATC 7 cut(s) 167, 545, 939, 1025, 1089, 1128, 1293
BmtI GCTAGC 2 cut(s) 95, 893
BpmI CTGGAG 2 cut(s) 212, 275
Bpu10I CCTNAGC 1 cut(s) 1224
BpuEI CTTGAG 1 cut(s) 1166
BpuMI CCSGG 5 cut(s) 368, 522, 775, 1103, 1197
BsaAI YACGTR 1 cut(s) 583
BsaBI GATNNNNATC 1 cut(s) 929
BsaI GGTCTC 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 6 cut(s) 200, 230, 692, 722, 1271, 1301
Bsc4I CCNNNNNNNGG 9 cut(s) 49, 235, 253, 774, 849, 1034, 1108, 1109, 1159
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 292, 1075
Bse3DI GCAATG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 929
BseBI CCWGG 5 cut(s) 68, 254, 844, 946, 1300
BseGI GGATG 4 cut(s) 158, 917, 1080, 1308
BseJI GATNNNNATC 1 cut(s) 929
BseLI CCNNNNNNNGG 9 cut(s) 49, 235, 253, 774, 849, 1034, 1108, 1109, 1159
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 5 cut(s) 404, 434, 950, 1238, 1275
BseNI ACTGG 2 cut(s) 292, 1075
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 3 cut(s) 106, 1117, 1151
BseX3I CGGCCG 1 cut(s) 1104
BseXI GCAGC 3 cut(s) 192, 668, 905
BseYI CCCAGC 1 cut(s) 511
BsgI GTGCAG 2 cut(s) 661, 1351
Bsh1236I CGCG 2 cut(s) 50, 1089
Bsh1285I CGRYCG 2 cut(s) 1107, 1164
BshNI GGYRCC 3 cut(s) 673, 1112, 1148
BsiEI CGRYCG 2 cut(s) 1107, 1164
BsiHKAI GWGCWC 2 cut(s) 106, 999
BsiSI CCGG 8 cut(s) 96, 132, 162, 368, 521, 774, 1103, 1196
BslFI GGGAC 3 cut(s) 165, 327, 797
BslI CCNNNNNNNGG 9 cut(s) 49, 235, 253, 774, 849, 1034, 1108, 1109, 1159
BsmAI GTCTC 1 cut(s) 423
BsmFI GGGAC 3 cut(s) 165, 327, 797
BsmI GAATGC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 423
Bsp1286I GDGCHC 5 cut(s) 106, 999, 1117, 1151, 1215
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 2 cut(s) 924, 1386
BspCNI CTCAG 5 cut(s) 405, 433, 951, 1237, 1276
BspFNI CGCG 2 cut(s) 50, 1089
BspLI GGNNCC 3 cut(s) 675, 1114, 1150
BspOI GCTAGC 2 cut(s) 95, 893
BspT107I GGYRCC 3 cut(s) 673, 1112, 1148
BspTNI GGTCTC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 804
BsrI ACTGG 2 cut(s) 292, 1075
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 2 cut(s) 924, 1386
BssT1I CCWWGG 2 cut(s) 987, 1008
Bst2UI CCWGG 5 cut(s) 68, 254, 844, 946, 1300
Bst4CI ACNGT 9 cut(s) 29, 108, 353, 388, 727, 811, 952, 1394, 1409
Bst6I CTCTTC 1 cut(s) 986
BstAUI TGTACA 1 cut(s) 804
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 9 cut(s) 93, 669, 759, 891, 976, 1099, 1117, 1170, 1234
BstDEI CTNAG 5 cut(s) 413, 420, 959, 1224, 1284
BstDSI CCRYGG 4 cut(s) 48, 462, 531, 1107
BstF5I GGATG 4 cut(s) 158, 917, 1080, 1308
BstFNI CGCG 2 cut(s) 50, 1089
BstHHI GCGC 2 cut(s) 234, 1238
BstKTI GATC 2 cut(s) 927, 1389
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 2 cut(s) 924, 1386
BstMCI CGRYCG 2 cut(s) 1107, 1164
BstNI CCWGG 5 cut(s) 68, 254, 844, 946, 1300
BstNSI RCATGY 1 cut(s) 1236
BstSLI GKGCMC 3 cut(s) 106, 1117, 1151
BstUI CGCG 2 cut(s) 50, 1089
BstV1I GCAGC 3 cut(s) 192, 668, 905
BstXI CCANNNNNNTGG 1 cut(s) 1070
BstZI CGGCCG 1 cut(s) 1104
BsuI GTATCC 1 cut(s) 128
BtgI CCRYGG 4 cut(s) 48, 462, 531, 1107
BtgZI GCGATG 1 cut(s) 911
BtsCI GGATG 4 cut(s) 158, 917, 1080, 1308
BtsI GCAGTG 2 cut(s) 330, 649
BtsIMutI CAGTG 4 cut(s) 104, 330, 649, 807
Cac8I GCNNGC 9 cut(s) 93, 669, 759, 891, 976, 1099, 1117, 1170, 1234
CfoI GCGC 2 cut(s) 234, 1238
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 653, 820
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 2 cut(s) 580, 805
CviQI GTAC 2 cut(s) 580, 805
DdeI CTNAG 5 cut(s) 413, 420, 959, 1224, 1284
DpnI GATC 2 cut(s) 926, 1388
DpnII GATC 2 cut(s) 924, 1386
DrdI GACNNNNNNGTC 1 cut(s) 998
DseDI GACNNNNNNGTC 1 cut(s) 998
EaeI YGGCCR 6 cut(s) 18, 255, 339, 528, 765, 1104
EagI CGGCCG 1 cut(s) 1104
Eam1104I CTCTTC 1 cut(s) 986
EarI CTCTTC 1 cut(s) 986
Ecl136II GAGCTC 1 cut(s) 997
EclXI CGGCCG 1 cut(s) 1104
Eco130I CCWWGG 2 cut(s) 987, 1008
Eco147I AGGCCT 1 cut(s) 978
Eco24I GRGCYC 2 cut(s) 999, 1215
Eco31I GGTCTC 1 cut(s) 423
Eco32I GATATC 1 cut(s) 740
Eco52I CGGCCG 1 cut(s) 1104
Eco53kI GAGCTC 1 cut(s) 997
EcoICRI GAGCTC 1 cut(s) 997
EcoRII CCWGG 5 cut(s) 66, 252, 842, 944, 1298
EcoRV GATATC 1 cut(s) 740
EcoT14I CCWWGG 2 cut(s) 987, 1008
EcoT38I GRGCYC 2 cut(s) 999, 1215
ErhI CCWWGG 2 cut(s) 987, 1008
FaqI GGGAC 3 cut(s) 165, 327, 797
FauI CCCGC 2 cut(s) 568, 1124
FbaI TGATCA 1 cut(s) 1386
Fnu4HI GCNGC 8 cut(s) 48, 181, 342, 656, 682, 768, 894, 1090
FokI GGATG 4 cut(s) 145, 924, 1067, 1315
FriOI GRGCYC 2 cut(s) 999, 1215
Fsp4HI GCNGC 8 cut(s) 48, 181, 342, 656, 682, 768, 894, 1090
FspBI CTAG 5 cut(s) 86, 92, 155, 795, 890
GlaI GCGC 2 cut(s) 233, 1237
GluI GCNGC 8 cut(s) 48, 181, 342, 656, 682, 768, 894, 1090
GsaI CCCAGC 1 cut(s) 515
GsuI CTGGAG 2 cut(s) 212, 275
HapII CCGG 8 cut(s) 96, 132, 162, 368, 521, 774, 1103, 1196
HhaI GCGC 2 cut(s) 234, 1238
Hin6I GCGC 2 cut(s) 232, 1236
HinP1I GCGC 2 cut(s) 232, 1236
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 4 cut(s) 748, 778, 955, 1286
HpaII CCGG 8 cut(s) 96, 132, 162, 368, 521, 774, 1103, 1196
HphI GGTGA 6 cut(s) 112, 121, 514, 964, 976, 1337
Hpy166II GTNNAC 3 cut(s) 104, 378, 807
Hpy188I TCNGA 6 cut(s) 44, 414, 423, 456, 789, 960
Hpy188III TCNNGA 2 cut(s) 145, 280
Hpy8I GTNNAC 3 cut(s) 104, 378, 807
HpyAV CCTTC 3 cut(s) 221, 595, 1183
HpyCH4III ACNGT 9 cut(s) 29, 108, 353, 388, 727, 811, 952, 1394, 1409
HpyCH4IV ACGT 4 cut(s) 486, 582, 620, 939
HpyCH4V TGCA 8 cut(s) 104, 180, 335, 394, 642, 917, 1016, 1332
HpyF3I CTNAG 5 cut(s) 413, 420, 959, 1224, 1284
HpySE526I ACGT 4 cut(s) 486, 582, 620, 939
HspAI GCGC 2 cut(s) 232, 1236
Ksp22I TGATCA 1 cut(s) 1386
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 2 cut(s) 924, 1386
Lsp1109I GCAGC 3 cut(s) 192, 668, 905
LweI GCATC 7 cut(s) 167, 545, 939, 1025, 1089, 1128, 1293
MaeI CTAG 5 cut(s) 86, 92, 155, 795, 890
MaeII ACGT 4 cut(s) 486, 582, 620, 939
MaeIII GTNAC 4 cut(s) 427, 721, 940, 1403
MalI GATC 2 cut(s) 926, 1388
MboI GATC 2 cut(s) 924, 1386
MboII GAAGA 3 cut(s) 973, 1376, 1379
MhlI GDGCHC 5 cut(s) 106, 999, 1117, 1151, 1215
MluCI AATT 3 cut(s) 1038, 1123, 1424
MlyI GAGTC 1 cut(s) 1295
MmeI TCCRAC 1 cut(s) 575
MseI TTAA 2 cut(s) 242, 285
MslI CAYNNNNRTG 7 cut(s) 335, 557, 563, 797, 910, 938, 1154
MspA1I CMGCKG 2 cut(s) 50, 658
MspI CCGG 8 cut(s) 96, 132, 162, 368, 521, 774, 1103, 1196
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 5 cut(s) 68, 254, 844, 946, 1300
MvnI CGCG 2 cut(s) 50, 1089
NciI CCSGG 5 cut(s) 368, 522, 775, 1103, 1197
NdeII GATC 2 cut(s) 924, 1386
NheI GCTAGC 2 cut(s) 91, 889
NlaIV GGNNCC 3 cut(s) 675, 1114, 1150
NmeAIII GCCGAG 1 cut(s) 702
NmuCI GTSAC 3 cut(s) 427, 721, 940
NspI RCATGY 1 cut(s) 1236
OliI CACNNNNGTG 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 1236
PceI AGGCCT 1 cut(s) 978
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 3 cut(s) 748, 778, 955
PflMI CCANNNNNTGG 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 8 cut(s) 49, 182, 343, 657, 683, 769, 895, 1091
PleI GAGTC 1 cut(s) 1294
PpsI GAGTC 1 cut(s) 1294
Ppu21I YACGTR 1 cut(s) 583
PshBI ATTAAT 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 999
Psp6I CCWGG 5 cut(s) 66, 252, 842, 944, 1298
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 5 cut(s) 66, 252, 842, 944, 1298
PspN4I GGNNCC 3 cut(s) 675, 1114, 1150
PspPI GGNCC 2 cut(s) 653, 820
RsaI GTAC 2 cut(s) 581, 806
RsaNI GTAC 2 cut(s) 580, 805
RseI CAYNNNNRTG 7 cut(s) 335, 557, 563, 797, 910, 938, 1154
SacI GAGCTC 1 cut(s) 999
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 242, 285
SatI GCNGC 8 cut(s) 48, 181, 342, 656, 682, 768, 894, 1090
Sau3AI GATC 2 cut(s) 924, 1386
Sau96I GGNCC 2 cut(s) 653, 820
SchI GAGTC 1 cut(s) 1295
SduI GDGCHC 5 cut(s) 106, 999, 1117, 1151, 1215
SfaNI GCATC 7 cut(s) 167, 545, 939, 1025, 1089, 1128, 1293
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SmiMI CAYNNNNRTG 7 cut(s) 335, 557, 563, 797, 910, 938, 1154
SmlI CTYRAG 1 cut(s) 1181
SmoI CTYRAG 1 cut(s) 1181
SphI GCATGC 1 cut(s) 1236
Sse9I AATT 3 cut(s) 1038, 1123, 1424
SseBI AGGCCT 1 cut(s) 978
SspMI CTAG 5 cut(s) 86, 92, 155, 795, 890
SstI GAGCTC 1 cut(s) 999
StuI AGGCCT 1 cut(s) 978
StyI CCWWGG 2 cut(s) 987, 1008
TaaI ACNGT 9 cut(s) 29, 108, 353, 388, 727, 811, 952, 1394, 1409
TaiI ACGT 4 cut(s) 489, 585, 623, 942
TaqI TCGA 1 cut(s) 168
TasI AATT 3 cut(s) 1038, 1123, 1424
TatI WGTACW 1 cut(s) 804
TauI GCSGC 5 cut(s) 50, 344, 658, 770, 1092
TfiI GAWTC 3 cut(s) 748, 778, 955
Tru1I TTAA 2 cut(s) 242, 285
Tru9I TTAA 2 cut(s) 242, 285
TscAI CASTG 4 cut(s) 111, 337, 649, 814
TseFI GTSAC 3 cut(s) 427, 721, 940
TseI GCWGC 3 cut(s) 180, 681, 893
Tsp45I GTSAC 3 cut(s) 427, 721, 940
TspDTI ATGAA 5 cut(s) 38, 298, 461, 569, 1377
TspGWI ACGGA 1 cut(s) 1286
TspRI CASTG 4 cut(s) 111, 337, 649, 814
Van91I CCANNNNNTGG 1 cut(s) 235
VneI GTGCAC 1 cut(s) 102
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 2 cut(s) 1038, 1424
XceI RCATGY 1 cut(s) 1236
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 334
XspI CTAG 5 cut(s) 86, 92, 155, 795, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.