Rorug06G0069400

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000321
Physical Location & Seq
Reverse (-)
9246727 .. 9252207
5481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0069400.1

Sequence Viewer

Length: 762 bp
ATGTTGCCGACGACTTCGAGAGGTCGGTCGTCGTCCTCTACATCTCGGACGACCAATCCCCTCTTCATTCAGTACCTCCGCCGCATAATCAAGTGGCAGCAAATGGACATTGAGTATACATTTTGGCAAATGCTTCATCTATGCACCTCACCAAAAGTTGTCTATCAGCACACTAAGTATCACAAGCAAACTAAGAACCAATGGGCACGTGATGATCCTGCTTTTGTTGTGATCTGCAGCCTTCTACTTGCAGTTGCAACCCTGGCTTATTGTGCTGCGTATGATCATAGTGCTGCACATGCTGTTTTTGTAGTTATTTCAGTTTTGCTTTTCCATTTTTTGTTCATTGGGATGCTTCTGGCTACGTTTTGCTGGTTCCTGACTAATTCTTACCTTCGGGAAGAGGCTCCAAATAGTCATGTTGTTGAGCAGCGTGTTGAATGGCTCTACGCATTTGATGTGCACTGCAACTCTTTCTTCCCGATGTTTGTTATGCTCTACGTGCTCCATTATTTTCTGTCACCTCTTTTGGTAGCTCATGGTTTCATCCCTGTATTGCTATCAAATTTGCTATTCATGGTGGCTTCTTCATACTATCATTATCTCAACTTCTTAGGTTATGATGTACTGCCATTCCTGGAAAGGACCACTTTCTTCCTGTACCCAATTAGTATTGTCATAGTCCTCTCTCCTATCTTGATTTTGAGTGGCTTCAATCCTTCAAGATATTTCATGAACGTGTATTTCAGTCATCGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

253

Amino Acids

29.66

Weight (kDa)

8.76

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UNC-50 PF05216 25 - 249 2.8e-85 UNC-50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 116
AciI CCGC 2 cut(s) 79, 82
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 565
AcvI CACGTG 1 cut(s) 209
AfaI GTAC 3 cut(s) 74, 627, 662
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 3 cut(s) 440, 715, 723
AjnI CCWGG 2 cut(s) 261, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 1 cut(s) 536
AluI AGCT 1 cut(s) 536
Alw21I GWGCWC 2 cut(s) 465, 507
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 1 cut(s) 209
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 5 cut(s) 97, 237, 275, 293, 430
ApoI RAATTY 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 645
AsuHPI GGTGA 2 cut(s) 141, 513
AvaII GGWCC 1 cut(s) 645
BaeGI GKGCMC 2 cut(s) 208, 465
BbrPI CACGTG 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 465, 507
BbvI GCAGC 5 cut(s) 109, 249, 262, 280, 442
BciT130I CCWGG 2 cut(s) 263, 638
BclI TGATCA 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 6 cut(s) 82, 98, 238, 276, 294, 431
BlsI GCNGC 6 cut(s) 83, 99, 239, 277, 295, 432
Bme1390I CCNGG 2 cut(s) 263, 638
Bme18I GGWCC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 2 cut(s) 377, 408
BmrFI CCNGG 2 cut(s) 263, 638
BmsI GCATC 1 cut(s) 342
BsaAI YACGTR 2 cut(s) 209, 502
BsaJI CCNNGG 1 cut(s) 261
BseBI CCWGG 2 cut(s) 263, 638
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 357, 546
BseSI GKGCMC 2 cut(s) 208, 465
BseXI GCAGC 5 cut(s) 109, 249, 262, 280, 442
BsgI GTGCAG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 465, 507
Bsp1286I GDGCHC 3 cut(s) 208, 465, 507
Bsp143I GATC 3 cut(s) 214, 231, 283
BspACI CCGC 2 cut(s) 79, 82
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 2 cut(s) 377, 408
BspMAI CTGCAG 1 cut(s) 239
BspPI GGATC 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 3 cut(s) 214, 231, 283
BssNAI GTATAC 1 cut(s) 117
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 263, 638
Bst6I CTCTTC 2 cut(s) 68, 396
BstBAI YACGTR 2 cut(s) 209, 502
BstDEI CTNAG 3 cut(s) 174, 192, 613
BstF5I GGATG 2 cut(s) 357, 546
BstKTI GATC 3 cut(s) 217, 234, 286
BstMBI GATC 3 cut(s) 214, 231, 283
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 4 cut(s) 263, 272, 299, 502
BstNI CCWGG 2 cut(s) 263, 638
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 261, 636
BstSFI CTRYAG 1 cut(s) 235
BstSLI GKGCMC 2 cut(s) 208, 465
BstV1I GCAGC 5 cut(s) 109, 249, 262, 280, 442
BstZ17I GTATAC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 357, 546
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 463
CciI TCATGA 1 cut(s) 732
Cfr13I GGNCC 1 cut(s) 645
Csp6I GTAC 3 cut(s) 73, 626, 661
CviAII CATG 5 cut(s) 299, 419, 539, 577, 733
CviJI RGCY 8 cut(s) 240, 266, 362, 407, 445, 536, 584, 711
CviKI_1 RGCY 8 cut(s) 240, 266, 362, 407, 445, 536, 584, 711
CviQI GTAC 3 cut(s) 73, 626, 661
DdeI CTNAG 3 cut(s) 174, 192, 613
DpnI GATC 3 cut(s) 216, 233, 285
DpnII GATC 3 cut(s) 214, 231, 283
Eam1104I CTCTTC 2 cut(s) 68, 396
EarI CTCTTC 2 cut(s) 68, 396
EciI GGCGGA 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 645
Eco72I CACGTG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 261, 636
FaeI CATG 5 cut(s) 302, 422, 542, 580, 736
FalI AAGNNNNNCTT 2 cut(s) 634, 666
FatI CATG 5 cut(s) 298, 418, 538, 576, 732
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 6 cut(s) 82, 98, 238, 276, 294, 431
FokI GGATG 2 cut(s) 364, 533
Fsp4HI GCNGC 6 cut(s) 82, 98, 238, 276, 294, 431
GluI GCNGC 6 cut(s) 82, 98, 238, 276, 294, 431
Hin1II CATG 5 cut(s) 302, 422, 542, 580, 736
HphI GGTGA 2 cut(s) 141, 513
Hpy166II GTNNAC 2 cut(s) 117, 463
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 7 cut(s) 18, 379, 398, 481, 697, 723, 733
Hpy8I GTNNAC 2 cut(s) 117, 463
Hpy99I CGWCG 2 cut(s) 13, 34
HpyAV CCTTC 3 cut(s) 251, 404, 729
HpyCH4IV ACGT 4 cut(s) 208, 365, 501, 738
HpyCH4V TGCA 7 cut(s) 144, 237, 251, 257, 296, 463, 468
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 272, 299, 502
HpyF3I CTNAG 3 cut(s) 174, 192, 613
HpySE526I ACGT 4 cut(s) 208, 365, 501, 738
Hsp92II CATG 5 cut(s) 302, 422, 542, 580, 736
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 3 cut(s) 214, 231, 283
LmnI GCTCC 2 cut(s) 412, 510
Lsp1109I GCAGC 5 cut(s) 109, 249, 262, 280, 442
LweI GCATC 1 cut(s) 342
MaeII ACGT 4 cut(s) 208, 365, 501, 738
MaeIII GTNAC 1 cut(s) 519
MalI GATC 3 cut(s) 216, 233, 285
MboI GATC 3 cut(s) 214, 231, 283
MboII GAAGA 5 cut(s) 55, 413, 469, 579, 646
MhlI GDGCHC 3 cut(s) 208, 465, 507
MluCI AATT 3 cut(s) 385, 565, 666
MnlI CCTC 8 cut(s) 14, 46, 71, 86, 157, 397, 534, 695
MslI CAYNNNNRTG 2 cut(s) 350, 737
MspR9I CCNGG 2 cut(s) 263, 638
MvaI CCWGG 2 cut(s) 263, 638
MwoI GCNNNNNNNGC 4 cut(s) 263, 272, 299, 502
NdeII GATC 3 cut(s) 214, 231, 283
NlaIII CATG 5 cut(s) 302, 422, 542, 580, 736
NlaIV GGNNCC 2 cut(s) 377, 408
NmuCI GTSAC 1 cut(s) 519
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 732
PfoI TCCNGGA 1 cut(s) 636
PkrI GCNGC 6 cut(s) 83, 99, 239, 277, 295, 432
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
Ppu21I YACGTR 2 cut(s) 209, 502
Psp6I CCWGG 2 cut(s) 261, 636
PspCI CACGTG 1 cut(s) 209
PspGI CCWGG 2 cut(s) 261, 636
PspN4I GGNNCC 2 cut(s) 377, 408
PspPI GGNCC 1 cut(s) 645
PstI CTGCAG 1 cut(s) 239
RsaI GTAC 3 cut(s) 74, 627, 662
RsaNI GTAC 3 cut(s) 73, 626, 661
RseI CAYNNNNRTG 2 cut(s) 350, 737
SatI GCNGC 6 cut(s) 82, 98, 238, 276, 294, 431
Sau3AI GATC 3 cut(s) 214, 231, 283
Sau96I GGNCC 1 cut(s) 645
ScrFI CCNGG 2 cut(s) 263, 638
SduI GDGCHC 3 cut(s) 208, 465, 507
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 645
SmiMI CAYNNNNRTG 2 cut(s) 350, 737
Sse9I AATT 3 cut(s) 385, 565, 666
SsiI CCGC 2 cut(s) 79, 82
StyD4I CCNGG 2 cut(s) 261, 636
TaiI ACGT 4 cut(s) 211, 368, 504, 741
TaqI TCGA 1 cut(s) 17
TaqII GACCGA 1 cut(s) 15
TasI AATT 3 cut(s) 385, 565, 666
TatI WGTACW 1 cut(s) 625
TauI GCSGC 1 cut(s) 84
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 5 cut(s) 97, 237, 275, 293, 430
Tsp45I GTSAC 1 cut(s) 519
TspDTI ATGAA 8 cut(s) 55, 125, 334, 535, 565, 579, 721, 749
TspRI CASTG 1 cut(s) 470
VneI GTGCAC 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 645
XapI RAATTY 1 cut(s) 565
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.