Rh6CG186300

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000321
Physical Location & Seq
Reverse (-)
30214226 .. 30238249
24024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG186300.1

Sequence Viewer

Length: 1128 bp
ATGGATTCAGAAGAAGAAAATCATGCTACTGAAGATGACTTGCCATCTGATGAGAAGAAGGGAAGAGGTCCAACTCTCATGTCCGACATTATTCATGGTAGGAGTAAGGGGGCTCAGATGGAAGTTACTTATAGTAAAAAAGGGCAACCAATTGGTCTTGGAGGGAAAAGACTAGCTTCTTTTATTGGGGTAATGGCTCGAACTACTATCCCAATTACATATGAGACTTGGCCAACTATGAAGAATTCACTTAAAGAAATGATATGGAGTATGGTTAAGAAATCATTCATTGTGGATCCAAGAAGCAAGAAAGATGTCTTGAGTAGTGCAGGAAGGAAATGGAAATCATTCAAGAGCACTTTAACTACTAAATATATATTGAAGTATAAAGATCGACAGAGCCTCCTAAAGAAAAAACCTAAAGAATATGAGTTCATTACTCAACCTGAGTGGGAAGCTTTTGTCAAATCTCGATTAACTCTTGAATTTTTGAAAATGGAGTTAGGGACTAAAGAAGATATTGATAGAGCCAACTTATGGAAGAAAGGGCATGTAGATAAAGAGGGTAACTATTTGAGTGAGACAACCAAACAACGTGCTGAGAAAATTGATGCTTTAGCGAAAGATGTAAGAGAGGGAATTGTGTCCGTTGTTGGTAGAAATGACATTTTGACTCAAGCTTTGGAGACACCTGAGCAACTAGGTCGTGTAAGAGGTGCTGGACAATTTGTTACACACAAGGTGTACTTTAACACATCTAGATATAAGCCTGCAACTAAGATACAAATGTTGGAACTGCAATTGGAATTGATGCAAAACCAGATCAACATGTTTGCTTCATTATTGGATCCTGAGAAGTTGGATCCAGCTAAACTAAGCATGATGAGAGACATGTTCAGATCTAATAACAGATCTGACAAAGCTAGTTGCTCAGTCGACAAGGAGAAAAATCAGTCTTCTAAGGATGAGAGTTTTGATTGGGATTCTGGAAGCACACAGTGTCTTGGGTTGTTATGTCAATGTGGATGGGAGTTACAGATTCAAGATGAGGAGACAAATGGTTACTCGGCACAATATTCGTCAACTGGTTTTACTGATATGGGGAACACAGCTGATGAAGTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

375

Amino Acids

42.69

Weight (kDa)

8.41

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 537
AccI GTMKAC 1 cut(s) 936
AclWI GGATC 6 cut(s) 290, 303, 842, 855, 857, 870
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 2 cut(s) 244, 485
AcuI CTGAAG 1 cut(s) 51
AdeI CACNNNGTG 2 cut(s) 742, 999
AfaI GTAC 1 cut(s) 746
AfiI CCNNNNNNNGG 1 cut(s) 537
AflIII ACRYGT 2 cut(s) 828, 891
AgsI TTSAA 5 cut(s) 352, 382, 485, 493, 1043
AluBI AGCT 6 cut(s) 176, 458, 680, 869, 923, 1112
AluI AGCT 6 cut(s) 176, 458, 680, 869, 923, 1112
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 5 cut(s) 218, 575, 680, 882, 1046
AlwI GGATC 6 cut(s) 290, 303, 842, 855, 857, 870
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 2 cut(s) 244, 485
ArsI GACNNNNNNTTYG 2 cut(s) 664, 696
Asp700I GAANNNNTTC 2 cut(s) 284, 347
AspS9I GGNCC 1 cut(s) 68
AvaII GGWCC 1 cut(s) 68
BaeI ACNNNNGTAYC 2 cut(s) 773, 806
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 3 cut(s) 295, 847, 862
BanII GRGCYC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 948
Bbv12I GWGCWC 1 cut(s) 359
BccI CCATC 3 cut(s) 52, 112, 1020
BcgI CGANNNNNNTGC 4 cut(s) 686, 720, 1059, 1093
BcoDI GTCTC 5 cut(s) 218, 575, 680, 882, 1046
BfaI CTAG 4 cut(s) 173, 701, 759, 924
BglII AGATCT 2 cut(s) 899, 911
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 3 cut(s) 297, 849, 864
BmsI GCATC 2 cut(s) 601, 801
BpiI GAAGAC 1 cut(s) 948
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 2 cut(s) 340, 660
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 537
Bse1I ACTGG 1 cut(s) 1090
BseGI GGATG 2 cut(s) 970, 1031
BseLI CCNNNNNNNGG 1 cut(s) 537
BseMII CTCAG 6 cut(s) 128, 438, 591, 684, 843, 945
BseNI ACTGG 1 cut(s) 1090
BseRI GAGGAG 1 cut(s) 1064
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 359
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 537
BsmAI GTCTC 5 cut(s) 218, 575, 680, 882, 1046
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 115, 359
Bsp143I GATC 7 cut(s) 295, 391, 822, 847, 862, 899, 911
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 6 cut(s) 127, 439, 592, 685, 844, 944
BspLI GGNNCC 3 cut(s) 297, 849, 864
BspPI GGATC 6 cut(s) 290, 303, 842, 855, 857, 870
BsrI ACTGG 1 cut(s) 1090
BssMI GATC 7 cut(s) 295, 391, 822, 847, 862, 899, 911
Bst4CI ACNGT 1 cut(s) 999
Bst6I CTCTTC 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 771
BstDEI CTNAG 9 cut(s) 114, 447, 600, 693, 777, 852, 875, 931, 960
BstF5I GGATG 2 cut(s) 970, 1031
BstKTI GATC 7 cut(s) 298, 394, 825, 850, 865, 902, 914
BstMAI GTCTC 5 cut(s) 218, 575, 680, 882, 1046
BstMBI GATC 7 cut(s) 295, 391, 822, 847, 862, 899, 911
BstNSI RCATGY 3 cut(s) 554, 832, 895
BstV2I GAAGAC 1 cut(s) 948
BstX2I RGATCY 5 cut(s) 295, 847, 862, 899, 911
BstYI RGATCY 5 cut(s) 295, 847, 862, 899, 911
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 2 cut(s) 970, 1031
BtsIMutI CAGTG 1 cut(s) 1004
Cac8I GCNNGC 1 cut(s) 771
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 745
CspCI CAANNNNNGTGG 2 cut(s) 431, 466
CviAII CATG 7 cut(s) 23, 79, 95, 551, 829, 880, 892
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 9 cut(s) 114, 447, 600, 693, 777, 852, 875, 931, 960
DpnI GATC 7 cut(s) 297, 393, 824, 849, 864, 901, 913
DpnII GATC 7 cut(s) 295, 391, 822, 847, 862, 899, 911
DraIII CACNNNGTG 2 cut(s) 742, 999
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 7 cut(s) 26, 82, 98, 554, 832, 883, 895
FalI AAGNNNNNCTT 4 cut(s) 160, 192, 731, 763
FaqI GGGAC 1 cut(s) 520
FatI CATG 7 cut(s) 22, 78, 94, 550, 828, 879, 891
FauNDI CATATG 1 cut(s) 220
FblI GTMKAC 1 cut(s) 936
FokI GGATG 2 cut(s) 977, 1038
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 4 cut(s) 173, 701, 759, 924
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 7 cut(s) 26, 82, 98, 554, 832, 883, 895
HincII GTYRAC 2 cut(s) 937, 1083
HindII GTYRAC 2 cut(s) 937, 1083
HindIII AAGCTT 2 cut(s) 456, 678
HinfI GANTC 4 cut(s) 5, 673, 983, 1039
Hpy166II GTNNAC 3 cut(s) 745, 937, 1083
Hpy188I TCNGA 6 cut(s) 10, 49, 85, 117, 899, 916
Hpy188III TCNNGA 8 cut(s) 319, 352, 471, 482, 759, 851, 987, 1043
Hpy8I GTNNAC 3 cut(s) 745, 937, 1083
HpyAV CCTTC 2 cut(s) 52, 327
HpyCH4III ACNGT 1 cut(s) 999
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 4 cut(s) 329, 773, 799, 814
HpyF3I CTNAG 9 cut(s) 114, 447, 600, 693, 777, 852, 875, 931, 960
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 7 cut(s) 26, 82, 98, 554, 832, 883, 895
Kzo9I GATC 7 cut(s) 295, 391, 822, 847, 862, 899, 911
LweI GCATC 2 cut(s) 601, 801
MaeI CTAG 4 cut(s) 173, 701, 759, 924
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 5 cut(s) 124, 566, 730, 1032, 1061
MalI GATC 7 cut(s) 297, 393, 824, 849, 864, 901, 913
MboI GATC 7 cut(s) 295, 391, 822, 847, 862, 899, 911
MboII GAAGA 9 cut(s) 23, 26, 44, 67, 75, 253, 527, 553, 948
MfeI CAATTG 2 cut(s) 150, 800
MflI RGATCY 5 cut(s) 295, 847, 862, 899, 911
MhlI GDGCHC 2 cut(s) 115, 359
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 9 cut(s) 150, 213, 244, 485, 606, 639, 725, 800, 806
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 667
MmeI TCCRAC 4 cut(s) 95, 108, 771, 840
MnlI CCTC 7 cut(s) 59, 155, 413, 556, 628, 707, 1042
Mox20I TGGCCA 1 cut(s) 232
MroXI GAANNNNTTC 2 cut(s) 284, 347
MscI TGGCCA 1 cut(s) 232
MseI TTAA 5 cut(s) 252, 276, 362, 476, 750
Msp20I TGGCCA 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 1112
MunI CAATTG 2 cut(s) 150, 800
NdeI CATATG 1 cut(s) 220
NdeII GATC 7 cut(s) 295, 391, 822, 847, 862, 899, 911
NlaIII CATG 7 cut(s) 26, 82, 98, 554, 832, 883, 895
NlaIV GGNNCC 3 cut(s) 297, 849, 864
NmeAIII GCCGAG 1 cut(s) 1046
NspI RCATGY 3 cut(s) 554, 832, 895
PciI ACATGT 2 cut(s) 828, 891
PdmI GAANNNNTTC 2 cut(s) 284, 347
PfeI GAWTC 3 cut(s) 5, 983, 1039
PflMI CCANNNNNTGG 1 cut(s) 537
PleI GAGTC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 667
PscI ACATGT 2 cut(s) 828, 891
PspN4I GGNNCC 3 cut(s) 297, 849, 864
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 5 cut(s) 295, 847, 862, 899, 911
PvuII CAGCTG 1 cut(s) 1112
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
SalI GTCGAC 1 cut(s) 935
SaqAI TTAA 5 cut(s) 252, 276, 362, 476, 750
Sau3AI GATC 7 cut(s) 295, 391, 822, 847, 862, 899, 911
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 667
SduI GDGCHC 2 cut(s) 115, 359
SfaNI GCATC 2 cut(s) 601, 801
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 319, 675
SmoI CTYRAG 2 cut(s) 319, 675
Sse9I AATT 9 cut(s) 150, 213, 244, 485, 606, 639, 725, 800, 806
SspI AATATT 1 cut(s) 1076
SspMI CTAG 4 cut(s) 173, 701, 759, 924
TaaI ACNGT 1 cut(s) 999
TaiI ACGT 1 cut(s) 598
TaqI TCGA 4 cut(s) 199, 394, 472, 936
TasI AATT 9 cut(s) 150, 213, 244, 485, 606, 639, 725, 800, 806
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 3 cut(s) 5, 983, 1039
Tru1I TTAA 5 cut(s) 252, 276, 362, 476, 750
Tru9I TTAA 5 cut(s) 252, 276, 362, 476, 750
TscAI CASTG 1 cut(s) 1004
TspDTI ATGAA 5 cut(s) 83, 254, 277, 424, 828
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 1 cut(s) 1004
Van91I CCANNNNNTGG 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 2 cut(s) 244, 485
XbaI TCTAGA 1 cut(s) 758
XceI RCATGY 3 cut(s) 554, 832, 895
XmiI GTMKAC 1 cut(s) 936
XmnI GAANNNNTTC 2 cut(s) 284, 347
XspI CTAG 4 cut(s) 173, 701, 759, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.