Rh6BG230000

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000321
Physical Location & Seq
Reverse (-)
43429749 .. 43432622
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG230000.1

Sequence Viewer

Length: 1224 bp
ATGGATCTAGTAGAAGAAAATCATGCTTCTGAAGATGACTTGTCATCTGATGAGAAGAAGGGAAGAGGTCCAACTCTGATGTCCGACATTATTCATGGCAGGAGTAAGGGGGCTCGAATGGAAGTGACATATAACAAAAAGGGGCAACCAATTGGTCTTGGAGGGAAGAGGTTAGCTACTTTTATTGGGGTAATGGCTCGAACTACTATCCCAATCACATATGAGACTTGGCCAGCCGTGAAGAATTCACTTAAAGAAATGGTATGGAGTATGGTTCAGAAACTGGAGTTAGGAACTGAAGAAGATATTGACAGAGCTATATTATGGAAGAAAGGGCGTGTCGATAAAGAGGGTAACTATTTGAGTGAGACAACCAAACAGGGTGTTGAGAAAATTGATGCTTTAACGAAAGATGTGAGAGAGGGAATTGTGTCCGCTGTTGGTCGGAACGACATTTTGACCCAAGCTTTGGAGACACCTGAGCAACCAGGCCGTGTAAGAGCTAGCTACTCAGTCGACAAGGAGAAAAATCAGTATTCTAAGGAGGAGGTATCTAATGTGGCATCCAAGAAAGAAATTGAGAAAAAAGCTACTGCAAAAAAGGCTCGAAAAGTGGATGATATTCCATCTCGGATTGACAGCAATAGAGAGAGCAAGAAGGCAAAACAACAGTACAAAGGGGGACTAATGATGAGAGACACAGCCGCATTGGAAGATGACAATGTGATAACATCAACAGAGAAATCATATATTCCTATTTGGACAACAAATACTGTAAAAAAGGGAAATAAATGCAAGCTAGCTGTAGACACTAAAGATAACATTGTTGCAATGGGAACTAACTCAATGAGCACTCATAAGTCTTCAAGTAAAATACCATGTAAGCAAGCAGCATACAAGATGCCGCCAATATCCACAATCTGCATCTCTATCTACATGAGACACCTTTGGTCATTGTTGAAAATGAAGGATGAGGATCACTTGTATGCATTTGTAGATCCTGGCCGCATCTCTAATGAAGCTGGAAAGGTTGAGGCTAGATCATGTGCGCTATCACTTAGATTAGAGTCTGCACAAGTAGATCAATTAATTCTTGTGCCTTATAATACAGGGAATCATTGGTTGCTGGCTGCCATTAACCCATTTAGTGCATTGGTATATTACTTCGACCCATTGAGTAACATTAACATCAATCCAGGAATGAAGAACATCGTAGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

407

Amino Acids

45.46

Weight (kDa)

8.99

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
AccB7I CCANNNNNTGG 1 cut(s) 469
AccI GTMKAC 2 cut(s) 516, 807
AciI CCGC 4 cut(s) 435, 705, 905, 1006
AclWI GGATC 3 cut(s) 12, 984, 992
AcoI YGGCCR 2 cut(s) 230, 1003
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 2 cut(s) 51, 318
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 2 cut(s) 867, 961
AjnI CCWGG 3 cut(s) 487, 1000, 1195
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 5 cut(s) 218, 362, 467, 690, 934
AlwI GGATC 3 cut(s) 12, 984, 992
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 3 cut(s) 230, 490, 1003
ApeKI GCWGC 2 cut(s) 890, 1130
ApoI RAATTY 1 cut(s) 244
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AseI ATTAAT 1 cut(s) 1088
AspLEI GCGC 1 cut(s) 1051
AspS9I GGNCC 1 cut(s) 68
AsuNHI GCTAGC 2 cut(s) 503, 799
AvaII GGWCC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 232
BanII GRGCYC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 854
BbvI GCAGC 2 cut(s) 902, 1117
BccI CCATC 1 cut(s) 634
BceAI ACGGC 2 cut(s) 221, 477
BciT130I CCWGG 3 cut(s) 489, 1002, 1197
BcoDI GTCTC 5 cut(s) 218, 362, 467, 690, 934
BfaI CTAG 4 cut(s) 8, 504, 800, 1038
BfmI CTRYAG 1 cut(s) 804
BisI GCNGC 5 cut(s) 705, 891, 905, 1006, 1131
BlsI GCNGC 5 cut(s) 706, 892, 906, 1007, 1132
Bme1390I CCNGG 3 cut(s) 489, 1002, 1197
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmrFI CCNGG 3 cut(s) 489, 1002, 1197
BmsI GCATC 5 cut(s) 388, 572, 891, 933, 1017
BmtI GCTAGC 2 cut(s) 507, 803
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 480
BsaBI GATNNNNATC 1 cut(s) 975
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 837
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 3 cut(s) 489, 1002, 1197
BseGI GGATG 3 cut(s) 563, 622, 976
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 2 cut(s) 471, 525
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 2 cut(s) 902, 1117
BsgI GTGCAG 1 cut(s) 1056
BshFI GGCC 3 cut(s) 232, 492, 1005
BsiHKAI GWGCWC 1 cut(s) 854
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 5 cut(s) 218, 362, 467, 690, 934
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 3 cut(s) 232, 492, 1005
Bsp1286I GDGCHC 2 cut(s) 115, 854
Bsp143I GATC 5 cut(s) 4, 976, 997, 1040, 1081
BspACI CCGC 4 cut(s) 435, 705, 905, 1006
BspANI GGCC 3 cut(s) 232, 492, 1005
BspCNI CTCAG 2 cut(s) 472, 524
BspOI GCTAGC 2 cut(s) 507, 803
BspPI GGATC 3 cut(s) 12, 984, 992
BsrDI GCAATG 1 cut(s) 837
BsrI ACTGG 1 cut(s) 288
BssMI GATC 5 cut(s) 4, 976, 997, 1040, 1081
Bst2UI CCWGG 3 cut(s) 489, 1002, 1197
Bst4CI ACNGT 2 cut(s) 672, 775
Bst6I CTCTTC 2 cut(s) 58, 161
BstC8I GCNNGC 6 cut(s) 234, 505, 797, 801, 888, 1128
BstDEI CTNAG 4 cut(s) 480, 511, 540, 1058
BstF5I GGATG 3 cut(s) 563, 622, 976
BstHHI GCGC 1 cut(s) 1051
BstKTI GATC 5 cut(s) 7, 979, 1000, 1043, 1084
BstMAI GTCTC 5 cut(s) 218, 362, 467, 690, 934
BstMBI GATC 5 cut(s) 4, 976, 997, 1040, 1081
BstMWI GCNNNNNNNGC 1 cut(s) 602
BstNI CCWGG 3 cut(s) 489, 1002, 1197
BstSCI CCNGG 3 cut(s) 487, 1000, 1195
BstSFI CTRYAG 1 cut(s) 804
BstV1I GCAGC 2 cut(s) 902, 1117
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 2 cut(s) 4, 997
BstYI RGATCY 2 cut(s) 4, 997
BsuRI GGCC 3 cut(s) 232, 492, 1005
BtsCI GGATG 3 cut(s) 563, 622, 976
Cac8I GCNNGC 6 cut(s) 234, 505, 797, 801, 888, 1128
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 1 cut(s) 1051
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 673
CviAII CATG 5 cut(s) 23, 95, 879, 937, 1044
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 4 cut(s) 480, 511, 540, 1058
DpnI GATC 5 cut(s) 6, 978, 999, 1042, 1083
DpnII GATC 5 cut(s) 4, 976, 997, 1040, 1081
EaeI YGGCCR 2 cut(s) 230, 1003
Eam1104I CTCTTC 2 cut(s) 58, 161
EarI CTCTTC 2 cut(s) 58, 161
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 2 cut(s) 51, 318
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 487, 1000, 1195
EcoT22I ATGCAT 1 cut(s) 991
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 5 cut(s) 26, 98, 882, 940, 1047
FaqI GGGAC 1 cut(s) 696
FatI CATG 5 cut(s) 22, 94, 878, 936, 1043
FauNDI CATATG 1 cut(s) 220
FblI GTMKAC 2 cut(s) 516, 807
Fnu4HI GCNGC 5 cut(s) 705, 891, 905, 1006, 1131
FokI GGATG 3 cut(s) 550, 629, 983
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 5 cut(s) 705, 891, 905, 1006, 1131
FspBI CTAG 4 cut(s) 8, 504, 800, 1038
GlaI GCGC 1 cut(s) 1050
GluI GCNGC 5 cut(s) 705, 891, 905, 1006, 1131
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 3 cut(s) 232, 492, 1005
HhaI GCGC 1 cut(s) 1051
Hin1II CATG 5 cut(s) 26, 98, 882, 940, 1047
Hin6I GCGC 1 cut(s) 1049
HinP1I GCGC 1 cut(s) 1049
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 2 cut(s) 1067, 1114
Hpy166II GTNNAC 2 cut(s) 517, 808
Hpy188I TCNGA 7 cut(s) 31, 49, 78, 85, 279, 447, 633
Hpy8I GTNNAC 2 cut(s) 517, 808
HpyAV CCTTC 3 cut(s) 52, 652, 961
HpyCH4III ACNGT 2 cut(s) 672, 775
HpyCH4V TGCA 7 cut(s) 596, 795, 830, 924, 989, 1073, 1151
HpyF10VI GCNNNNNNNGC 1 cut(s) 602
HpyF3I CTNAG 4 cut(s) 480, 511, 540, 1058
Hsp92II CATG 5 cut(s) 26, 98, 882, 940, 1047
HspAI GCGC 1 cut(s) 1049
Kzo9I GATC 5 cut(s) 4, 976, 997, 1040, 1081
Lsp1109I GCAGC 2 cut(s) 902, 1117
LweI GCATC 5 cut(s) 388, 572, 891, 933, 1017
MaeI CTAG 4 cut(s) 8, 504, 800, 1038
MaeIII GTNAC 3 cut(s) 124, 353, 1178
MalI GATC 5 cut(s) 6, 978, 999, 1042, 1083
MboI GATC 5 cut(s) 4, 976, 997, 1040, 1081
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 2 cut(s) 4, 997
MhlI GDGCHC 2 cut(s) 115, 854
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 7 cut(s) 150, 244, 393, 426, 576, 1085, 1089
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 1076
MmeI TCCRAC 3 cut(s) 95, 108, 425
MnlI CCTC 9 cut(s) 59, 155, 162, 343, 415, 538, 541, 967, 1027
Mox20I TGGCCA 1 cut(s) 232
Mph1103I ATGCAT 1 cut(s) 991
MscI TGGCCA 1 cut(s) 232
MseI TTAA 5 cut(s) 252, 404, 1088, 1137, 1185
MslI CAYNNNNRTG 1 cut(s) 984
Msp20I TGGCCA 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 437
MspR9I CCNGG 3 cut(s) 489, 1002, 1197
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 3 cut(s) 489, 1002, 1197
MwoI GCNNNNNNNGC 1 cut(s) 602
NdeI CATATG 1 cut(s) 220
NdeII GATC 5 cut(s) 4, 976, 997, 1040, 1081
NheI GCTAGC 2 cut(s) 503, 799
NlaIII CATG 5 cut(s) 26, 98, 882, 940, 1047
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 991
PfeI GAWTC 1 cut(s) 1114
PflMI CCANNNNNTGG 1 cut(s) 469
PfoI TCCNGGA 1 cut(s) 1195
PkrI GCNGC 5 cut(s) 706, 892, 906, 1007, 1132
PleI GAGTC 1 cut(s) 1075
PpsI GAGTC 1 cut(s) 1075
PshBI ATTAAT 1 cut(s) 1088
PsiI TTATAA 1 cut(s) 1104
Psp6I CCWGG 3 cut(s) 487, 1000, 1195
PspGI CCWGG 3 cut(s) 487, 1000, 1195
PspPI GGNCC 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 283
PsuI RGATCY 2 cut(s) 4, 997
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 1 cut(s) 984
SalI GTCGAC 1 cut(s) 515
SaqAI TTAA 5 cut(s) 252, 404, 1088, 1137, 1185
SatI GCNGC 5 cut(s) 705, 891, 905, 1006, 1131
Sau3AI GATC 5 cut(s) 4, 976, 997, 1040, 1081
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 1076
ScrFI CCNGG 3 cut(s) 489, 1002, 1197
SduI GDGCHC 2 cut(s) 115, 854
SfaNI GCATC 5 cut(s) 388, 572, 891, 933, 1017
SfcI CTRYAG 1 cut(s) 804
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 984
Sse9I AATT 7 cut(s) 150, 244, 393, 426, 576, 1085, 1089
SsiI CCGC 4 cut(s) 435, 705, 905, 1006
SspMI CTAG 4 cut(s) 8, 504, 800, 1038
StyD4I CCNGG 3 cut(s) 487, 1000, 1195
TaaI ACNGT 2 cut(s) 672, 775
TaqI TCGA 6 cut(s) 115, 199, 342, 516, 607, 1167
TasI AATT 7 cut(s) 150, 244, 393, 426, 576, 1085, 1089
TatI WGTACW 1 cut(s) 672
TauI GCSGC 3 cut(s) 707, 907, 1008
TfiI GAWTC 1 cut(s) 1114
Tru1I TTAA 5 cut(s) 252, 404, 1088, 1137, 1185
Tru9I TTAA 5 cut(s) 252, 404, 1088, 1137, 1185
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 890, 1130
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 83, 980, 1032, 1217
Van91I CCANNNNNTGG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 1088
XapI RAATTY 1 cut(s) 244
XmiI GTMKAC 2 cut(s) 516, 807
XspI CTAG 4 cut(s) 8, 504, 800, 1038
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.