Rroxscaffold_5G00368260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000321
Physical Location & Seq
Reverse (-)
50073404 .. 50075521
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368260.1

Sequence Viewer

Length: 465 bp
ATGGCTCGAACTACTATCCCAATCACATATGAGACTTGGCCAGCCGTGAAGAAATCACTTAAAGAAATGATATGGAGTATGGAAATTCATGAGGACCACTCAAGGAGACGAGCTTTTCATGAGTATGAGCATCGAATGTCCAGGAAAGGCTATGCTAATTTGGAAGAGGAGCTAAAAGGGCGTGTCGATAAAGAGGGTAACTATTTGAGTGAGACAACCAAACAACGTGCCGAGAAGATTGCAAAACAACAATCCAAAGGGGGGCTAATGACGAGAGAGATAGCCGCATTGGAAGATGACAATGTGATAACATCAACGGATAAAGCATATATTCCTATCCGGACAACAAATGTTGTAAAAAAGAACTCAATGAGCACTCGAAGTTTTCGAGTAAAACACCATGCGGACAAGCGGCATACAAGATACCGGTTTCTGTGCATCTTCTATCGCGCTTGGCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

18.35

Weight (kDa)

9.76

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 450
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 3 cut(s) 285, 404, 412
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 261
AgeI ACCGGT 1 cut(s) 426
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 2 cut(s) 113, 172
AluI AGCT 2 cut(s) 113, 172
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 3 cut(s) 26, 100, 206
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 426
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 94
AvaII GGWCC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 3 cut(s) 26, 100, 206
BisI GCNGC 2 cut(s) 285, 413
BlsI GCNGC 2 cut(s) 286, 414
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 2 cut(s) 139, 447
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuEI CTTGAG 1 cut(s) 85
BsaWI WCCGGW 2 cut(s) 339, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 426
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 1 cut(s) 40
BshTI ACCGGT 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 2 cut(s) 340, 427
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 3 cut(s) 26, 100, 206
BsmBI CGTCTC 1 cut(s) 100
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 339
BspACI CCGC 3 cut(s) 285, 404, 412
BspANI GGCC 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 339
BspFNI CGCG 1 cut(s) 450
BspHI TCATGA 2 cut(s) 88, 118
BsrFI RCCGGY 1 cut(s) 426
BssAI RCCGGY 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 42
BstFNI CGCG 1 cut(s) 450
BstHHI GCGC 1 cut(s) 452
BstMAI GTCTC 3 cut(s) 26, 100, 206
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstUI CGCG 1 cut(s) 450
BsuRI GGCC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 42
CciI TCATGA 2 cut(s) 88, 118
CfoI GCGC 1 cut(s) 452
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 94
CspAI ACCGGT 1 cut(s) 426
CviAII CATG 3 cut(s) 89, 119, 401
CviJI RGCY 8 cut(s) 5, 40, 44, 113, 150, 172, 265, 284
CviKI_1 RGCY 8 cut(s) 5, 40, 44, 113, 150, 172, 265, 284
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 3 cut(s) 92, 122, 404
FatI CATG 3 cut(s) 88, 118, 400
FauNDI CATATG 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 285, 413
Fsp4HI GCNGC 2 cut(s) 285, 413
GlaI GCGC 1 cut(s) 451
GluI GCNGC 2 cut(s) 285, 413
HaeIII GGCC 1 cut(s) 40
HapII CCGG 2 cut(s) 340, 427
HhaI GCGC 1 cut(s) 452
Hin1II CATG 3 cut(s) 92, 122, 404
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HpaII CCGG 2 cut(s) 340, 427
Hpy188III TCNNGA 3 cut(s) 89, 119, 340
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 242, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 3 cut(s) 92, 122, 404
HspAI GCGC 1 cut(s) 450
Kpn2I TCCGGA 1 cut(s) 339
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 5 cut(s) 54, 127, 154, 353, 440
LweI GCATC 2 cut(s) 139, 447
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 5 cut(s) 61, 176, 247, 305, 433
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 2 cut(s) 84, 157
MluNI TGGCCA 1 cut(s) 40
MnlI CCTC 3 cut(s) 85, 160, 187
Mox20I TGGCCA 1 cut(s) 40
MroI TCCGGA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 40
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 40
MspI CCGG 2 cut(s) 340, 427
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeI CATATG 1 cut(s) 28
NlaIII CATG 3 cut(s) 92, 122, 404
NmeAIII GCCGAG 1 cut(s) 256
PagI TCATGA 2 cut(s) 88, 118
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PfoI TCCNGGA 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 426
PkrI GCNGC 2 cut(s) 286, 414
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspPI GGNCC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 285, 413
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 377
SetI ASST 3 cut(s) 115, 174, 229
SfaNI GCATC 2 cut(s) 139, 447
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 2 cut(s) 84, 157
SsiI CCGC 3 cut(s) 285, 404, 412
StyD4I CCNGG 1 cut(s) 140
TaiI ACGT 1 cut(s) 229
TaqI TCGA 5 cut(s) 7, 133, 186, 379, 388
TasI AATT 2 cut(s) 84, 157
TauI GCSGC 2 cut(s) 287, 415
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TspDTI ATGAA 2 cut(s) 77, 107
TspGWI ACGGA 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.