Rorug07G0213000

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000321
Physical Location & Seq
Forward (+)
18818757 .. 18822761
4005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0213000.1

Sequence Viewer

Length: 699 bp
ATGAGTGCCGGTGGTGGTAATCAGTTGATCTCTGTTCTTCCGGAGGAGCTCAGATTTCAATTTGAGCTGGAAAAGCAAAGCTTTTGTGATCTAAAAGTCATCAACAACACAGAAAACCATGTTGCTTTCAAGGTTAAAACCACTTCCCCTAAGAAGTACTTTGTACGGCCCAACACTGGTGTTATACAGGCTTGGGACTCATGTGTAATCAGAGTCACCCTCCAAGCCCAACGAGAATATCCTCCAGACATGCAGTGCAAAGATAAATTTCTCCTACAGAGTACAACGGTGCCTCCAAATTCTGATGTTGATGAACTTCCACAAGATACTTTCACCAAAGAAAGTGGAAGGACAATAGAGGAGTGCAAGCTTAGAGTTGTCTATTTAACTCCGGGTTCAGGTCAAGGAAACTCAGAAGACGGAGCTTCTATGCGTGGTCTTGATACCAATTCTAATCAGGCTTTCCAGCGCCTGAAGGAAGAAAGAGATTCAGCTGTTAGACAAACACAGACACTTCAACAGGAACTGGACGTACTGAAGAGGCGGAGATACCGGAAAGGCGACCCAGGCTTTTCCTTTACCTTTGCAATTTTTGTGGGACTTATTGGACTCATGGTTGGCTTCCTCTTGAATCTGTCATTGTCTTCACCACCCATAGAAGCTTCATCATCCACAGAATCTTCACCATTAATGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

232

Amino Acids

25.97

Weight (kDa)

5.64

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cep192_D6 PF22076 10 - 77 1.5e-06 Cep192 domain 6
Motile_Sperm PF00635 11 - 110 4e-29 MSP (Major sperm protein) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 1 cut(s) 544
AcsI RAATTY 2 cut(s) 266, 298
AcuI CTGAAG 2 cut(s) 494, 557
AfaI GTAC 4 cut(s) 158, 165, 283, 534
AfiI CCNNNNNNNGG 2 cut(s) 176, 398
AgsI TTSAA 4 cut(s) 59, 130, 518, 631
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 7 cut(s) 49, 67, 81, 370, 425, 494, 662
AluI AGCT 7 cut(s) 49, 67, 81, 370, 425, 494, 662
Alw21I GWGCWC 1 cut(s) 51
AlwNI CAGNNNCTG 2 cut(s) 472, 526
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 1 cut(s) 167
ApoI RAATTY 2 cut(s) 266, 298
AseI ATTAAT 1 cut(s) 689
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 208, 325, 639, 675
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 423, 636
Bbv12I GWGCWC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 567
BcnI CCSGG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 472
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 393, 567
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 2 cut(s) 393, 567
BpiI GAAGAC 2 cut(s) 423, 636
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpmI CTGGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 565
BsaWI WCCGGW 2 cut(s) 40, 552
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 398
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 181, 531
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 1 cut(s) 668
BseLI CCNNNNNNNGG 2 cut(s) 176, 398
BseMII CTCAG 2 cut(s) 64, 426
BseNI ACTGG 2 cut(s) 181, 531
BseRI GAGGAG 2 cut(s) 59, 374
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 4 cut(s) 9, 41, 392, 553
BslFI GGGAC 2 cut(s) 209, 612
BslI CCNNNNNNNGG 2 cut(s) 176, 398
BsmFI GGGAC 2 cut(s) 209, 612
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 27, 88
BspACI CCGC 1 cut(s) 544
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 2 cut(s) 63, 425
BspEI TCCGGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 291
BspT107I GGYRCC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 2 cut(s) 181, 531
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 2 cut(s) 27, 88
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 4 cut(s) 50, 150, 371, 412
BstF5I GGATG 1 cut(s) 668
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 2 cut(s) 30, 91
BstMBI GATC 2 cut(s) 27, 88
BstMWI GCNNNNNNNGC 2 cut(s) 73, 567
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 391, 565
BstSFI CTRYAG 1 cut(s) 275
BstV2I GAAGAC 2 cut(s) 423, 636
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 668
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 174, 260
Cac8I GCNNGC 1 cut(s) 368
CaiI CAGNNNCTG 2 cut(s) 472, 526
CfoI GCGC 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 4 cut(s) 157, 164, 282, 533
CspCI CAANNNNNGTGG 4 cut(s) 325, 360, 576, 611
CviAII CATG 4 cut(s) 119, 201, 250, 613
CviQI GTAC 4 cut(s) 157, 164, 282, 533
DdeI CTNAG 4 cut(s) 50, 150, 371, 412
DpnI GATC 2 cut(s) 29, 90
DpnII GATC 2 cut(s) 27, 88
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
EciI GGCGGA 1 cut(s) 559
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 494, 557
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 4 cut(s) 122, 204, 253, 616
FaiI YATR 7 cut(s) 120, 185, 202, 251, 431, 614, 656
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 143, 175
FaqI GGGAC 2 cut(s) 209, 612
FatI CATG 4 cut(s) 118, 200, 249, 612
FokI GGATG 1 cut(s) 655
FriOI GRGCYC 1 cut(s) 51
GlaI GCGC 1 cut(s) 470
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 1 cut(s) 169
HapII CCGG 4 cut(s) 9, 41, 392, 553
HhaI GCGC 1 cut(s) 471
Hin1II CATG 4 cut(s) 122, 204, 253, 616
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HindIII AAGCTT 3 cut(s) 79, 368, 660
HinfI GANTC 6 cut(s) 197, 213, 488, 609, 631, 677
HpaII CCGG 4 cut(s) 9, 41, 392, 553
HphI GGTGA 4 cut(s) 208, 325, 639, 675
Hpy188I TCNGA 4 cut(s) 53, 212, 304, 415
Hpy188III TCNNGA 4 cut(s) 41, 245, 440, 628
HpyAV CCTTC 2 cut(s) 342, 469
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 4 cut(s) 253, 258, 366, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 567
HpyF3I CTNAG 4 cut(s) 50, 150, 371, 412
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 4 cut(s) 122, 204, 253, 616
HspAI GCGC 1 cut(s) 469
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 27, 88
LmnI GCTCC 2 cut(s) 46, 422
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 29, 90
MboI GATC 2 cut(s) 27, 88
MboII GAAGA 6 cut(s) 29, 428, 491, 550, 636, 672
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 5 cut(s) 59, 266, 298, 448, 588
MlyI GAGTC 3 cut(s) 191, 222, 603
MnlI CCTC 7 cut(s) 37, 230, 252, 303, 352, 534, 635
MroI TCCGGA 1 cut(s) 40
MseI TTAA 3 cut(s) 135, 386, 689
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 4 cut(s) 9, 41, 392, 553
MspR9I CCNGG 2 cut(s) 393, 567
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 73, 567
NciI CCSGG 1 cut(s) 393
NdeII GATC 2 cut(s) 27, 88
NlaIII CATG 4 cut(s) 122, 204, 253, 616
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 1 cut(s) 253
PfeI GAWTC 3 cut(s) 488, 631, 677
PleI GAGTC 3 cut(s) 191, 221, 603
PpsI GAGTC 3 cut(s) 191, 221, 603
PshBI ATTAAT 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 168
PsrI GAACNNNNNNTAC 2 cut(s) 516, 548
PstNI CAGNNNCTG 2 cut(s) 472, 526
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 4 cut(s) 158, 165, 283, 534
RsaNI GTAC 4 cut(s) 157, 164, 282, 533
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 3 cut(s) 135, 386, 689
Sau3AI GATC 2 cut(s) 27, 88
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 3 cut(s) 191, 222, 603
ScrFI CCNGG 2 cut(s) 393, 567
SduI GDGCHC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 275
Sse9I AATT 5 cut(s) 59, 266, 298, 448, 588
SsiI CCGC 1 cut(s) 544
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 391, 565
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 534
TasI AATT 5 cut(s) 59, 266, 298, 448, 588
TatI WGTACW 2 cut(s) 156, 281
TfiI GAWTC 3 cut(s) 488, 631, 677
Tru1I TTAA 3 cut(s) 135, 386, 689
Tru9I TTAA 3 cut(s) 135, 386, 689
TscAI CASTG 2 cut(s) 181, 260
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 327, 654
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 2 cut(s) 181, 260
VspI ATTAAT 1 cut(s) 689
XapI RAATTY 2 cut(s) 266, 298
XceI RCATGY 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.