Rroxscaffold_2G00129450

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000321
Physical Location & Seq
Reverse (-)
65340388 .. 65367920
27533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129450.1

Sequence Viewer

Length: 1104 bp
ATGTTGAAAAGAAAATTGGAAGAGATCATTTTACACAATGTTCCTGTTTCCTATACGGAGAAGATTGTAAACGAAGTTGTCCTGATTATTGGTGGTCTTCAAGTCCTTCAACATAAAATGTGGATTGATGTACCCCCTGTACCGGGTGCCCTAGTGGTTAACATTGGAGGATTATGTGATATGGAAGTTGATAGGAGGTTCAAGTTCAGTCTTGTAAGGGAAGGAGAGGGCTGGAAAGTTCCAAAAGAAGGGAAGAGGTCCAACTCGATGTCCGACATTATTCATGGTAGGAGTAAGGGGGCTCGAATGGAAGTGACATATAACAAAAAGGGGCAACCAATTGGTCTTGGAGGGAAGATGCTAGCTGCTTTTATTGGGGTAATGGCTCGAACTACTATCCCAATCACCTATGAGACTTGGCCAGCTGTGAAGAATTCACTTAAAGAAATGATATGGAGTATGGTTCAGGACCACTCAAGGAGACGAGCTTTTCATGAGTATGATCATCGAATGTCCAGGAAAGGCTATGCTAATTTGGAAGAGGAACTAAAACTGGAGTTAGGAACTAAAGAAGATATTGACAGAGCTATATTATGGAAGAAAGGGCATGTCGATAAAGAGGGTAACTATTTGAGTGAGACAACCAAACAACGTGTTGTGAAAATTGATGCTTTAACGAAAGATGTGAGAGAGGGAATTGTGTCCGCTGTTGGTCGGAACGACATTTTGACCCAAGCTTTGGAGACACCGAGCAACCAGTACGTGTTAGAGGTGCTGGACAATTTGTTACACACAAGGTGTATTAATACTTGTTTTGGATGGTGTATAGGTAGCAGCGACAGCAGCAGCTACCTAGCAGCTAAGCGGGTTACCCACGTGTGCATGTCTCATGGCCACACGGGCTCCACGTCACCTAAAGTTGTCCACACCTATGGCTTGAAAATTCGCCACATGTGCGGGGTCACCTACTCAATTGGTTCCGAACTTCGTTGTGCTCAACTGCCAAGGGATGTAAATCCACGGGTGGTGAATAATGAGGTAGTCAGAATGAATTCATTTGCCTCATTATTCTCCACCATCAGATTTAGATCCAATGACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

367

Amino Acids

41.39

Weight (kDa)

9.32

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 159 - 228 1e-05 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 739
AciI CCGC 3 cut(s) 705, 865, 957
AclWI GGATC 1 cut(s) 1083
AcoI YGGCCR 2 cut(s) 419, 892
AcsI RAATTY 3 cut(s) 433, 942, 1051
AcvI CACGTG 1 cut(s) 877
AdeI CACNNNGTG 1 cut(s) 798
AfaI GTAC 3 cut(s) 132, 141, 761
AfiI CCNNNNNNNGG 4 cut(s) 142, 143, 248, 739
AflIII ACRYGT 4 cut(s) 652, 762, 876, 951
AgsI TTSAA 5 cut(s) 7, 101, 110, 202, 940
AjiI CACGTC 1 cut(s) 909
AjnI CCWGG 1 cut(s) 515
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 8 cut(s) 365, 425, 488, 587, 737, 849, 860, 1101
AluI AGCT 8 cut(s) 365, 425, 488, 587, 737, 849, 860, 1101
Alw21I GWGCWC 1 cut(s) 997
Alw26I GTCTC 5 cut(s) 407, 475, 632, 737, 891
AlwI GGATC 1 cut(s) 1083
AoxI GGCC 2 cut(s) 419, 892
ApeKI GCWGC 5 cut(s) 365, 834, 843, 846, 857
ApoI RAATTY 3 cut(s) 433, 942, 1051
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AseI ATTAAT 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 1051
AspS9I GGNCC 2 cut(s) 258, 469
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 4 cut(s) 397, 903, 955, 1039
AsuNHI GCTAGC 1 cut(s) 361
AvaII GGWCC 2 cut(s) 258, 469
BaeGI GKGCMC 1 cut(s) 151
BalI TGGCCA 2 cut(s) 421, 894
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 2 cut(s) 304, 905
BbrPI CACGTG 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 997
BbvI GCAGC 5 cut(s) 352, 846, 855, 858, 869
BccI CCATC 2 cut(s) 813, 1085
BciT130I CCWGG 1 cut(s) 517
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 5 cut(s) 407, 475, 632, 737, 891
BfaI CTAG 3 cut(s) 152, 362, 854
BglI GCCNNNNNGGC 1 cut(s) 900
BisI GCNGC 5 cut(s) 366, 835, 844, 847, 858
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 5 cut(s) 367, 836, 845, 848, 859
Bme1390I CCNGG 2 cut(s) 144, 517
Bme18I GGWCC 2 cut(s) 258, 469
BmgBI CACGTC 1 cut(s) 909
BmgT120I GGNCC 2 cut(s) 258, 469
BmiI GGNNCC 3 cut(s) 148, 904, 979
BmrFI CCNGG 2 cut(s) 144, 517
BmsI GCATC 2 cut(s) 348, 658
BmtI GCTAGC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 460
BpuMI CCSGG 1 cut(s) 144
BsaAI YACGTR 2 cut(s) 763, 877
BsaBI GATNNNNATC 2 cut(s) 1014, 1087
BsaJI CCNNGG 2 cut(s) 1004, 1019
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 143, 248, 739
Bse1I ACTGG 2 cut(s) 558, 757
Bse8I GATNNNNATC 2 cut(s) 1014, 1087
BseBI CCWGG 1 cut(s) 517
BseDI CCNNGG 2 cut(s) 1004, 1019
BseGI GGATG 2 cut(s) 824, 1015
BseJI GATNNNNATC 2 cut(s) 1014, 1087
BseLI CCNNNNNNNGG 4 cut(s) 142, 143, 248, 739
BseNI ACTGG 2 cut(s) 558, 757
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 5 cut(s) 352, 846, 855, 858, 869
BshFI GGCC 2 cut(s) 421, 894
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 997
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 4 cut(s) 142, 143, 248, 739
BsmAI GTCTC 5 cut(s) 407, 475, 632, 737, 891
BsmBI CGTCTC 1 cut(s) 475
BsnI GGCC 2 cut(s) 421, 894
Bsp1286I GDGCHC 4 cut(s) 151, 304, 905, 997
Bsp143I GATC 3 cut(s) 24, 502, 1088
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 3 cut(s) 705, 865, 957
BspANI GGCC 2 cut(s) 421, 894
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 3 cut(s) 148, 904, 979
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 1083
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 558, 757
BssECI CCNNGG 2 cut(s) 1004, 1019
BssMI GATC 3 cut(s) 24, 502, 1088
BssT1I CCWWGG 1 cut(s) 1004
Bst2UI CCWGG 1 cut(s) 517
Bst6I CTCTTC 3 cut(s) 15, 248, 534
BstBAI YACGTR 2 cut(s) 763, 877
BstC8I GCNNGC 2 cut(s) 363, 423
BstDEI CTNAG 1 cut(s) 861
BstDSI CCRYGG 1 cut(s) 1019
BstEII GGTNACC 2 cut(s) 868, 961
BstF5I GGATG 2 cut(s) 824, 1015
BstKTI GATC 3 cut(s) 27, 505, 1091
BstMAI GTCTC 5 cut(s) 407, 475, 632, 737, 891
BstMBI GATC 3 cut(s) 24, 502, 1088
BstMWI GCNNNNNNNGC 4 cut(s) 840, 843, 900, 954
BstNI CCWGG 1 cut(s) 517
BstNSI RCATGY 3 cut(s) 611, 886, 955
BstPI GGTNACC 2 cut(s) 868, 961
BstSCI CCNGG 2 cut(s) 142, 515
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 5 cut(s) 352, 846, 855, 858, 869
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 1088
BstXI CCANNNNNNTGG 1 cut(s) 932
BstYI RGATCY 1 cut(s) 1088
BsuRI GGCC 2 cut(s) 421, 894
BtgI CCRYGG 1 cut(s) 1019
BtrI CACGTC 1 cut(s) 909
BtsCI GGATG 2 cut(s) 824, 1015
Cac8I GCNNGC 2 cut(s) 363, 423
CciI TCATGA 1 cut(s) 493
Cfr13I GGNCC 2 cut(s) 258, 469
Csp6I GTAC 3 cut(s) 131, 140, 760
CviAII CATG 6 cut(s) 284, 494, 608, 883, 890, 952
CviQI GTAC 3 cut(s) 131, 140, 760
DdeI CTNAG 1 cut(s) 861
DpnI GATC 3 cut(s) 26, 504, 1090
DpnII GATC 3 cut(s) 24, 502, 1088
DraIII CACNNNGTG 1 cut(s) 798
EaeI YGGCCR 2 cut(s) 419, 892
Eam1104I CTCTTC 3 cut(s) 15, 248, 534
EarI CTCTTC 3 cut(s) 15, 248, 534
Eco130I CCWWGG 1 cut(s) 1004
Eco24I GRGCYC 2 cut(s) 304, 905
Eco47I GGWCC 2 cut(s) 258, 469
Eco72I CACGTG 1 cut(s) 877
Eco91I GGTNACC 2 cut(s) 868, 961
EcoO65I GGTNACC 2 cut(s) 868, 961
EcoRI GAATTC 2 cut(s) 433, 1051
EcoRII CCWGG 1 cut(s) 515
EcoT14I CCWWGG 1 cut(s) 1004
EcoT38I GRGCYC 2 cut(s) 304, 905
ErhI CCWWGG 1 cut(s) 1004
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 6 cut(s) 287, 497, 611, 886, 893, 955
FatI CATG 6 cut(s) 283, 493, 607, 882, 889, 951
FauI CCCGC 2 cut(s) 858, 950
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 5 cut(s) 366, 835, 844, 847, 858
FokI GGATG 2 cut(s) 831, 1022
FriOI GRGCYC 2 cut(s) 304, 905
Fsp4HI GCNGC 5 cut(s) 366, 835, 844, 847, 858
FspBI CTAG 3 cut(s) 152, 362, 854
GluI GCNGC 5 cut(s) 366, 835, 844, 847, 858
GsuI CTGGAG 1 cut(s) 575
HaeIII GGCC 2 cut(s) 421, 894
HapII CCGG 1 cut(s) 143
Hin1II CATG 6 cut(s) 287, 497, 611, 886, 893, 955
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 735
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 143
HphI GGTGA 4 cut(s) 397, 903, 955, 1039
Hpy166II GTNNAC 3 cut(s) 70, 160, 925
Hpy188I TCNGA 5 cut(s) 274, 717, 982, 1046, 1082
Hpy188III TCNNGA 3 cut(s) 82, 467, 494
Hpy8I GTNNAC 3 cut(s) 70, 160, 925
HpyAV CCTTC 3 cut(s) 116, 215, 242
HpyCH4IV ACGT 4 cut(s) 652, 762, 876, 908
HpyCH4V TGCA 1 cut(s) 882
HpyF10VI GCNNNNNNNGC 4 cut(s) 840, 843, 900, 954
HpyF3I CTNAG 1 cut(s) 861
HpySE526I ACGT 4 cut(s) 652, 762, 876, 908
Hsp92II CATG 6 cut(s) 287, 497, 611, 886, 893, 955
Ksp22I TGATCA 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 24, 502, 1088
LmnI GCTCC 1 cut(s) 908
Lsp1109I GCAGC 5 cut(s) 352, 846, 855, 858, 869
LweI GCATC 2 cut(s) 348, 658
MaeI CTAG 3 cut(s) 152, 362, 854
MaeII ACGT 4 cut(s) 652, 762, 876, 908
MaeIII GTNAC 6 cut(s) 313, 623, 786, 868, 909, 961
MalI GATC 3 cut(s) 26, 504, 1090
MboI GATC 3 cut(s) 24, 502, 1088
MboII GAAGA 9 cut(s) 32, 73, 89, 265, 367, 442, 551, 584, 610
MfeI CAATTG 2 cut(s) 339, 972
MflI RGATCY 1 cut(s) 1088
MhlI GDGCHC 4 cut(s) 151, 304, 905, 997
MlsI TGGCCA 2 cut(s) 421, 894
MluNI TGGCCA 2 cut(s) 421, 894
MmeI TCCRAC 3 cut(s) 285, 297, 695
Mox20I TGGCCA 2 cut(s) 421, 894
MroXI GAANNNNTTC 1 cut(s) 1051
MscI TGGCCA 2 cut(s) 421, 894
MseI TTAA 4 cut(s) 159, 441, 674, 804
MslI CAYNNNNRTG 2 cut(s) 498, 930
Msp20I TGGCCA 2 cut(s) 421, 894
MspA1I CMGCKG 3 cut(s) 425, 707, 1101
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 144, 517
MunI CAATTG 2 cut(s) 339, 972
MvaI CCWGG 1 cut(s) 517
MwoI GCNNNNNNNGC 4 cut(s) 840, 843, 900, 954
NciI CCSGG 1 cut(s) 144
NdeII GATC 3 cut(s) 24, 502, 1088
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 6 cut(s) 287, 497, 611, 886, 893, 955
NlaIV GGNNCC 3 cut(s) 148, 904, 979
NmuCI GTSAC 3 cut(s) 313, 909, 961
NspI RCATGY 3 cut(s) 611, 886, 955
PagI TCATGA 1 cut(s) 493
PciI ACATGT 1 cut(s) 951
PcsI WCGNNNNNNNCGW 1 cut(s) 905
PdmI GAANNNNTTC 1 cut(s) 1051
PflMI CCANNNNNTGG 1 cut(s) 739
PfoI TCCNGGA 1 cut(s) 515
PkrI GCNGC 5 cut(s) 367, 836, 845, 848, 859
PmaCI CACGTG 1 cut(s) 877
PmlI CACGTG 1 cut(s) 877
Ppu21I YACGTR 2 cut(s) 763, 877
PscI ACATGT 1 cut(s) 951
PshBI ATTAAT 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 515
PspCI CACGTG 1 cut(s) 877
PspEI GGTNACC 2 cut(s) 868, 961
PspGI CCWGG 1 cut(s) 515
PspN4I GGNNCC 3 cut(s) 148, 904, 979
PspPI GGNCC 2 cut(s) 258, 469
PsuI RGATCY 1 cut(s) 1088
PvuII CAGCTG 2 cut(s) 425, 1101
RsaI GTAC 3 cut(s) 132, 141, 761
RsaNI GTAC 3 cut(s) 131, 140, 760
RseI CAYNNNNRTG 2 cut(s) 498, 930
SaqAI TTAA 4 cut(s) 159, 441, 674, 804
SatI GCNGC 5 cut(s) 366, 835, 844, 847, 858
Sau3AI GATC 3 cut(s) 24, 502, 1088
Sau96I GGNCC 2 cut(s) 258, 469
ScrFI CCNGG 2 cut(s) 144, 517
SduI GDGCHC 4 cut(s) 151, 304, 905, 997
SfaNI GCATC 2 cut(s) 348, 658
SinI GGWCC 2 cut(s) 258, 469
SmiMI CAYNNNNRTG 2 cut(s) 498, 930
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SsiI CCGC 3 cut(s) 705, 865, 957
SspMI CTAG 3 cut(s) 152, 362, 854
StyD4I CCNGG 2 cut(s) 142, 515
StyI CCWWGG 1 cut(s) 1004
TaiI ACGT 4 cut(s) 655, 765, 879, 911
TaqI TCGA 5 cut(s) 266, 304, 388, 508, 612
Tru1I TTAA 4 cut(s) 159, 441, 674, 804
Tru9I TTAA 4 cut(s) 159, 441, 674, 804
TseFI GTSAC 3 cut(s) 313, 909, 961
TseI GCWGC 5 cut(s) 365, 834, 843, 846, 857
Tsp45I GTSAC 3 cut(s) 313, 909, 961
TspDTI ATGAA 4 cut(s) 272, 482, 1044, 1064
TspGWI ACGGA 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 739
VpaK11BI GGWCC 2 cut(s) 258, 469
VspI ATTAAT 1 cut(s) 804
XapI RAATTY 3 cut(s) 433, 942, 1051
XceI RCATGY 3 cut(s) 611, 886, 955
XmnI GAANNNNTTC 1 cut(s) 1051
XspI CTAG 3 cut(s) 152, 362, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.