Rroxscaffold_159G00432800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000321
Physical Location & Seq
Reverse (-)
437625 .. 443074
5450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432800.1

Sequence Viewer

Length: 390 bp
ATGGGTTGTGTTGCGGATCGAAGCCACCGGTTGGGAGGAGGAGTTGGAGGCACGACGAGGCGATCTGCGGCTTGGGCGGGAGGGTTGGGTACGGCCCACCTTCTAGTTGGTGGCATTCGGAGGAATTTAGATTACGAGAATCTTTCCATAAAATTTTCTGGAGCAAACTTTGATTGGATTGGAAAGAAATTGTCTTTGGGTGACCAAACTGATATTGATCGATCAGTTCTGTGGAAGAAAGCACGTGTTGATAAAAATGGAAACTATTCAAATGAGGCAGTGAAACAACGTGTTGATAAAATTGAAAGCTATTGTGAAGAAGAAGAAGAAAAAGAAAATGGGACACCAAAAGAATCACAATCATATAAGGCTGACAAGAAAATACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.23

Weight (kDa)

8.87

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 3 cut(s) 14, 68, 77
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 2 cut(s) 124, 152
AcvI CACGTG 1 cut(s) 245
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 2 cut(s) 244, 289
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 2 cut(s) 270, 305
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
AlwI GGATC 1 cut(s) 24
AoxI GGCC 1 cut(s) 93
ApoI RAATTY 2 cut(s) 124, 152
AsiGI ACCGGT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 212
BbrPI CACGTG 1 cut(s) 245
BceAI ACGGC 1 cut(s) 108
BfaI CTAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 216
BseCI ATCGAT 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 31
BseRI GAGGAG 2 cut(s) 51, 54
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 27
BshVI ATCGAT 1 cut(s) 220
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 4 cut(s) 16, 62, 217, 221
BspACI CCGC 3 cut(s) 14, 68, 77
BspANI GGCC 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 220
BspPI GGATC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 4 cut(s) 16, 62, 217, 221
BstBAI YACGTR 1 cut(s) 245
BstEII GGTNACC 1 cut(s) 200
BstKTI GATC 4 cut(s) 19, 65, 220, 224
BstMBI GATC 4 cut(s) 16, 62, 217, 221
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstPI GGTNACC 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 220
BsuRI GGCC 1 cut(s) 95
BsuTUI ATCGAT 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 220
Csp6I GTAC 1 cut(s) 90
CspAI ACCGGT 1 cut(s) 27
CviJI RGCY 5 cut(s) 24, 71, 95, 309, 371
CviKI_1 RGCY 5 cut(s) 24, 71, 95, 309, 371
CviQI GTAC 1 cut(s) 90
DpnI GATC 4 cut(s) 18, 64, 219, 223
DpnII GATC 4 cut(s) 16, 62, 217, 221
Eco72I CACGTG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
FaiI YATR 3 cut(s) 149, 364, 366
FaqI GGGAC 1 cut(s) 355
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 104
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 28
HinfI GANTC 2 cut(s) 139, 353
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 110
HpyCH4IV ACGT 2 cut(s) 244, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 2 cut(s) 244, 289
Kzo9I GATC 4 cut(s) 16, 62, 217, 221
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 2 cut(s) 41, 144
MaeI CTAG 1 cut(s) 104
MaeII ACGT 2 cut(s) 244, 289
MaeIII GTNAC 1 cut(s) 200
MalI GATC 4 cut(s) 18, 64, 219, 223
MboI GATC 4 cut(s) 16, 62, 217, 221
MboII GAAGA 5 cut(s) 247, 329, 332, 335, 338
MluCI AATT 4 cut(s) 124, 152, 188, 300
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 7 cut(s) 29, 32, 41, 51, 74, 114, 268
MroXI GAANNNNTTC 1 cut(s) 265
MspI CCGG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 4 cut(s) 16, 62, 217, 221
NmuCI GTSAC 1 cut(s) 200
PctI GAATGC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 139, 353
PflMI CCANNNNNTGG 1 cut(s) 31
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 1 cut(s) 70
PmaCI CACGTG 1 cut(s) 245
PmlI CACGTG 1 cut(s) 245
Ppu21I YACGTR 1 cut(s) 245
PspCI CACGTG 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 4 cut(s) 16, 62, 217, 221
Sau96I GGNCC 1 cut(s) 94
SetI ASST 5 cut(s) 102, 247, 292, 311, 388
Sse9I AATT 4 cut(s) 124, 152, 188, 300
SsiI CCGC 3 cut(s) 14, 68, 77
SspMI CTAG 1 cut(s) 104
TaiI ACGT 2 cut(s) 247, 292
TaqI TCGA 2 cut(s) 19, 220
TasI AATT 4 cut(s) 124, 152, 188, 300
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 2 cut(s) 139, 353
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 31
XapI RAATTY 2 cut(s) 124, 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 265
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.