Rh7CG426200

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000321
Physical Location & Seq
Reverse (-)
55418754 .. 55419607
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG426200.1

Sequence Viewer

Length: 669 bp
ATGAAACACTTCAAAGACAATCCTTTAGAAGACGATGATGAATATACAGATGAGGATGCAGATGACCAGGCCACAAACAAGAGGAAAGGGAGAGGTCCAACTTTGATGTCAGACTTGGTCCATCGTAGGGGCCGTAAGGGTCGTATAGAAGTTGGATATAACACAAAGGGACAGCCAGAAGGCAAGCATGGATCAAATTTAGCTAGTTTCATTGGAGTAATGGCGCGAAGCACTGTTCCAATTATATATGAGGATTGGAAAGCGGTACCAGCTTCTTTAAAGGATAAGATATGGGACATGGTTCTGAAAGCATTCATCGTGGATATGAATAGTAGGAAGCATGTCATAAGCAGTGCTGGAAAGGCATGGAAATCATTCAAGAGCACTTTAACAACATCATATATATTGAAATTCAAACATCAGCCTCTGAAGCTAAAGACTCCACCGTCTGGCTATGATTTCATCCTTCAAGCACATTGGGATGCCTTTGTGATGTCTCGATTAACAGAAGAATTTGCGGAAATTAGAGAAGCTGCATCAAGGAGGCGAGCTCTCCATGTATACAATCATCGAATGTCTAGAAAAGGCTATGCCAATTTGGAAGAAGAATTAGTAAGCTCTGATTTTGTTTGTAGAATTTTGGCATGTAACTTTGTGGCAATACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

222

Amino Acids

25.41

Weight (kDa)

9.32

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 445
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 449
AccI GTMKAC 1 cut(s) 561
AccII CGCG 1 cut(s) 226
AciI CCGC 2 cut(s) 263, 518
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 4 cut(s) 196, 410, 512, 636
AcuI CTGAAG 1 cut(s) 449
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 127, 449
AgsI TTSAA 5 cut(s) 13, 379, 409, 415, 470
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 6 cut(s) 203, 272, 433, 533, 551, 618
AluI AGCT 6 cut(s) 203, 272, 433, 533, 551, 618
Alw21I GWGCWC 2 cut(s) 386, 553
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 199
AlwNI CAGNNNCTG 1 cut(s) 427
AoxI GGCC 2 cut(s) 69, 130
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 4 cut(s) 196, 410, 512, 636
Asp700I GAANNNNTTC 3 cut(s) 8, 311, 374
Asp718I GGTACC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 3 cut(s) 95, 118, 130
AvaII GGWCC 2 cut(s) 95, 118
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 386, 553
BbvI GCAGC 1 cut(s) 520
BccI CCATC 1 cut(s) 129
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 2 cut(s) 204, 579
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 2 cut(s) 95, 118
BmgT120I GGNCC 3 cut(s) 95, 118, 130
BmiI GGNNCC 2 cut(s) 131, 267
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 3 cut(s) 46, 472, 545
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 535, 567
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 449
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 3 cut(s) 61, 462, 487
BseLI CCNNNNNNNGG 2 cut(s) 127, 449
BseXI GCAGC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 2 cut(s) 71, 132
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 386, 553
BslFI GGGAC 2 cut(s) 183, 308
BslI CCNNNNNNNGG 2 cut(s) 127, 449
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 2 cut(s) 183, 308
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 2 cut(s) 71, 132
Bsp1286I GDGCHC 2 cut(s) 386, 553
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 2 cut(s) 263, 518
BspANI GGCC 2 cut(s) 71, 132
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 131, 267
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 265
BssMI GATC 1 cut(s) 191
BssNAI GTATAC 1 cut(s) 562
Bst1107I GTATAC 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 235, 447
BstC8I GCNNGC 2 cut(s) 185, 549
BstF5I GGATG 3 cut(s) 61, 462, 487
BstFNI CGCG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 3 cut(s) 269, 362, 430
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 2 cut(s) 344, 648
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 36
BstZ17I GTATAC 1 cut(s) 562
BsuRI GGCC 2 cut(s) 71, 132
BtsCI GGATG 3 cut(s) 61, 462, 487
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 231, 358
Cac8I GCNNGC 2 cut(s) 185, 549
CaiI CAGNNNCTG 1 cut(s) 427
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 95, 118, 130
Csp6I GTAC 1 cut(s) 266
CviAII CATG 6 cut(s) 188, 298, 341, 366, 557, 645
CviQI GTAC 1 cut(s) 266
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
DraI TTTAAA 1 cut(s) 279
DrdI GACNNNNNNGTC 1 cut(s) 445
DseDI GACNNNNNNGTC 1 cut(s) 445
Ecl136II GAGCTC 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 95, 118
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 553
FaeI CATG 6 cut(s) 191, 301, 344, 369, 560, 648
FaqI GGGAC 2 cut(s) 183, 308
FatI CATG 6 cut(s) 187, 297, 340, 365, 556, 644
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 3 cut(s) 68, 449, 494
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 2 cut(s) 204, 579
GlaI GCGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 534
HaeIII GGCC 2 cut(s) 71, 132
HhaI GCGC 1 cut(s) 226
Hin1II CATG 6 cut(s) 191, 301, 344, 369, 560, 648
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 1 cut(s) 439
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 4 cut(s) 112, 306, 429, 622
Hpy188III TCNNGA 3 cut(s) 379, 498, 579
Hpy8I GTNNAC 1 cut(s) 562
HpyAV CCTTC 2 cut(s) 173, 476
HpyCH4III ACNGT 2 cut(s) 235, 447
HpyCH4V TGCA 2 cut(s) 59, 536
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 362, 430
Hsp92II CATG 6 cut(s) 191, 301, 344, 369, 560, 648
HspAI GCGC 1 cut(s) 224
KpnI GGTACC 1 cut(s) 269
Kzo9I GATC 1 cut(s) 191
LpnPI CCDG 6 cut(s) 53, 80, 189, 282, 342, 435
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 3 cut(s) 46, 472, 545
MaeI CTAG 2 cut(s) 204, 579
MaeIII GTNAC 1 cut(s) 647
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 4 cut(s) 41, 521, 614, 617
MhlI GDGCHC 2 cut(s) 386, 553
MluCI AATT 8 cut(s) 196, 240, 410, 512, 522, 595, 608, 636
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 2 cut(s) 122, 133
MnlI CCTC 6 cut(s) 46, 75, 86, 244, 435, 537
MroXI GAANNNNTTC 3 cut(s) 8, 311, 374
MseI TTAA 3 cut(s) 278, 389, 503
MslI CAYNNNNRTG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 269, 362, 430
NdeII GATC 1 cut(s) 191
NlaIII CATG 6 cut(s) 191, 301, 344, 369, 560, 648
NlaIV GGNNCC 2 cut(s) 131, 267
NspI RCATGY 2 cut(s) 344, 648
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 1 cut(s) 311
PdmI GAANNNNTTC 3 cut(s) 8, 311, 374
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 131, 267
PspPI GGNCC 3 cut(s) 95, 118, 130
PstNI CAGNNNCTG 1 cut(s) 427
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 553
SaqAI TTAA 3 cut(s) 278, 389, 503
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 3 cut(s) 95, 118, 130
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 2 cut(s) 386, 553
SetI ASST 7 cut(s) 97, 205, 274, 435, 535, 553, 620
SfaNI GCATC 3 cut(s) 46, 472, 545
SinI GGWCC 2 cut(s) 95, 118
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 8 cut(s) 196, 240, 410, 512, 522, 595, 608, 636
SsiI CCGC 2 cut(s) 263, 518
SspMI CTAG 2 cut(s) 204, 579
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 2 cut(s) 235, 447
TaqI TCGA 2 cut(s) 499, 571
TasI AATT 8 cut(s) 196, 240, 410, 512, 522, 595, 608, 636
Tru1I TTAA 3 cut(s) 278, 389, 503
Tru9I TTAA 3 cut(s) 278, 389, 503
TscAI CASTG 2 cut(s) 238, 358
TseI GCWGC 1 cut(s) 533
TspDTI ATGAA 6 cut(s) 17, 54, 199, 304, 341, 451
TspRI CASTG 2 cut(s) 238, 358
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 95, 118
XapI RAATTY 4 cut(s) 196, 410, 512, 636
XbaI TCTAGA 1 cut(s) 578
XceI RCATGY 2 cut(s) 344, 648
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 3 cut(s) 8, 311, 374
XspI CTAG 2 cut(s) 204, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.