Rh6CG135600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000321
Physical Location & Seq
Reverse (-)
17211775 .. 17219685
7911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG135600.1

Sequence Viewer

Length: 801 bp
ATGTTGGAACAACAGTTGGAAATGATGCAAAACCAGATCAACATGTTTGCTTCATTATTGGATCCAGAGAAGTTGGCTGCAACTAAACTAAGCATGATGCGAGACATGTTCAAATCTAATAATGGATCTGAAAAAGCTAGCTGCTCAGTCGACAAGGAGAAAAATCAGTCTTCTAAGGAGGAGGTATCTAATGTGGTATCCAAGAAAGAAATTGAAAAAAACGCTACTGAAAAAAAGGTTCAAAAAGTCGATGATATTCCATCTCCAATTGACAGCAGTAGAGAGAGCAAGAAGGAAAAACAACAATCCAAAGGAGGGCTAATGACGAGAGAGATAGCCGCATTGGAAGATGACAATGTGATAACATCAACAGATAAAGCATATATTCCTATCCAGACAACAAATGTTGTAAAAAAGTTTGAGGAAAAAGAGACGTACACTCAAGAAGAGATTGATGTAGTTCGAGTAGAGTGGGCAGAACAGAGTATCATCTTTCCTGAAAATTTCAAAGGGGCCTGCTATCCGCCATTGCGTATCCTCAGGCGTCTTCATCTTGGAATGATTAACCTTCCGACAGAGGAGACGGATGTTTCTGACCTGGAGGATTCCTTGCTTTGGATGGCTCCTAATGCAGAGGAGAGGATTTATTATCCCAATAATCTTCAGCTCCTGATGGCTAACCCTCCAACAGAGGAGATGGATATTCCTTACCTAGAGATGTCTTTGCTTTGGATGGCTCCTACTCCAGAGGAGAGGTTATATGCAGATTTAGAAAGAATGCAGTATCATATGAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.78

Weight (kDa)

4.77

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AciI CCGC 2 cut(s) 339, 524
AclWI GGATC 3 cut(s) 56, 69, 133
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 647
AcyI GRCGYC 1 cut(s) 544
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 315, 615
AflIII ACRYGT 2 cut(s) 42, 105
AgsI TTSAA 4 cut(s) 112, 215, 242, 508
AjnI CCWGG 1 cut(s) 597
AluBI AGCT 3 cut(s) 137, 141, 667
AluI AGCT 3 cut(s) 137, 141, 667
Alw26I GTCTC 3 cut(s) 96, 425, 575
AlwI GGATC 3 cut(s) 56, 69, 133
AlwNI CAGNNNCTG 1 cut(s) 670
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 2 cut(s) 77, 141
ApoI RAATTY 1 cut(s) 502
AspS9I GGNCC 1 cut(s) 513
AsuNHI GCTAGC 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 539
BamHI GGATCC 1 cut(s) 61
BbsI GAAGAC 2 cut(s) 162, 539
BbvI GCAGC 2 cut(s) 64, 128
BccI CCATC 5 cut(s) 268, 613, 667, 691, 727
BciT130I CCWGG 1 cut(s) 599
BciVI GTATCC 2 cut(s) 208, 545
BcoDI GTCTC 3 cut(s) 96, 425, 575
BfaI CTAG 2 cut(s) 138, 713
BfuI GTATCC 2 cut(s) 208, 545
BisI GCNGC 3 cut(s) 78, 142, 339
BlsI GCNGC 3 cut(s) 79, 143, 340
Bme1390I CCNGG 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 4 cut(s) 63, 514, 624, 738
BmrFI CCNGG 1 cut(s) 599
BmsI GCATC 2 cut(s) 15, 87
BmtI GCTAGC 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 162, 539
BpmI CTGGAG 2 cut(s) 620, 729
BpuEI CTTGAG 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 544
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 615
Bse21I CCTNAGG 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 599
BseGI GGATG 3 cut(s) 592, 624, 738
BseLI CCNNNNNNNGG 2 cut(s) 315, 615
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 2 cut(s) 159, 553
BseRI GAGGAG 5 cut(s) 194, 593, 650, 707, 764
BseXI GCAGC 2 cut(s) 64, 128
BshFI GGCC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 315, 615
BsmAI GTCTC 3 cut(s) 96, 425, 575
BsmBI CGTCTC 2 cut(s) 425, 575
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 1 cut(s) 515
Bsp143I GATC 3 cut(s) 36, 61, 125
BspACI CCGC 2 cut(s) 339, 524
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 158, 552
BspLI GGNNCC 4 cut(s) 63, 514, 624, 738
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 3 cut(s) 56, 69, 133
BsrDI GCAATG 1 cut(s) 527
BssMI GATC 3 cut(s) 36, 61, 125
BssNI GRCGYC 1 cut(s) 544
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 544
BstC8I GCNNGC 2 cut(s) 139, 517
BstDEI CTNAG 4 cut(s) 89, 145, 174, 539
BstF5I GGATG 3 cut(s) 592, 624, 738
BstKTI GATC 3 cut(s) 39, 64, 128
BstMAI GTCTC 3 cut(s) 96, 425, 575
BstMBI GATC 3 cut(s) 36, 61, 125
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 2 cut(s) 46, 109
BstSCI CCNGG 1 cut(s) 597
BstV1I GCAGC 2 cut(s) 64, 128
BstV2I GAAGAC 2 cut(s) 162, 539
BstX2I RGATCY 2 cut(s) 61, 125
BstYI RGATCY 2 cut(s) 61, 125
Bsu36I CCTNAGG 1 cut(s) 539
BsuI GTATCC 2 cut(s) 208, 545
BsuRI GGCC 1 cut(s) 515
BtsCI GGATG 3 cut(s) 592, 624, 738
Cac8I GCNNGC 2 cut(s) 139, 517
CaiI CAGNNNCTG 1 cut(s) 670
Cfr13I GGNCC 1 cut(s) 513
CseI GACGC 1 cut(s) 533
Csp6I GTAC 1 cut(s) 436
CviAII CATG 3 cut(s) 43, 94, 106
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 4 cut(s) 89, 145, 174, 539
DpnI GATC 3 cut(s) 38, 63, 127
DpnII GATC 3 cut(s) 36, 61, 125
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
EciI GGCGGA 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 647
Eco81I CCTNAGG 1 cut(s) 539
EcoO109I RGGNCCY 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 597
Esp3I CGTCTC 2 cut(s) 425, 575
FaeI CATG 3 cut(s) 46, 97, 109
FatI CATG 3 cut(s) 42, 93, 105
FauNDI CATATG 1 cut(s) 789
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 78, 142, 339
FokI GGATG 3 cut(s) 599, 631, 745
Fsp4HI GCNGC 3 cut(s) 78, 142, 339
FspBI CTAG 2 cut(s) 138, 713
GluI GCNGC 3 cut(s) 78, 142, 339
GsuI CTGGAG 2 cut(s) 620, 729
HaeIII GGCC 1 cut(s) 515
HgaI GACGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 544
Hin1II CATG 3 cut(s) 46, 97, 109
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 605
Hpy166II GTNNAC 2 cut(s) 151, 438
Hpy188I TCNGA 3 cut(s) 130, 573, 595
Hpy188III TCNNGA 6 cut(s) 65, 394, 443, 497, 670, 746
Hpy8I GTNNAC 2 cut(s) 151, 438
HpyAV CCTTC 2 cut(s) 286, 578
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 5 cut(s) 28, 80, 632, 764, 781
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 4 cut(s) 89, 145, 174, 539
HpySE526I ACGT 1 cut(s) 434
Hsp92I GRCGYC 1 cut(s) 544
Hsp92II CATG 3 cut(s) 46, 97, 109
Kzo9I GATC 3 cut(s) 36, 61, 125
LmnI GCTCC 3 cut(s) 628, 672, 742
Lsp1109I GCAGC 2 cut(s) 64, 128
LweI GCATC 2 cut(s) 15, 87
MaeI CTAG 2 cut(s) 138, 713
MaeII ACGT 1 cut(s) 434
MalI GATC 3 cut(s) 38, 63, 127
MboI GATC 3 cut(s) 36, 61, 125
MboII GAAGA 5 cut(s) 162, 359, 458, 539, 653
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 2 cut(s) 61, 125
MluCI AATT 3 cut(s) 210, 267, 502
MmeI TCCRAC 2 cut(s) 596, 710
MseI TTAA 1 cut(s) 564
MspR9I CCNGG 1 cut(s) 599
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 1 cut(s) 599
MwoI GCNNNNNNNGC 1 cut(s) 629
NdeI CATATG 1 cut(s) 789
NdeII GATC 3 cut(s) 36, 61, 125
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 3 cut(s) 46, 97, 109
NlaIV GGNNCC 4 cut(s) 63, 514, 624, 738
NspI RCATGY 2 cut(s) 46, 109
PciI ACATGT 2 cut(s) 42, 105
PctI GAATGC 1 cut(s) 783
PfeI GAWTC 1 cut(s) 605
PkrI GCNGC 3 cut(s) 79, 143, 340
PscI ACATGT 2 cut(s) 42, 105
Psp6I CCWGG 1 cut(s) 597
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 4 cut(s) 63, 514, 624, 738
PspPI GGNCC 1 cut(s) 513
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 2 cut(s) 61, 125
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SalI GTCGAC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 3 cut(s) 78, 142, 339
Sau3AI GATC 3 cut(s) 36, 61, 125
Sau96I GGNCC 1 cut(s) 513
ScrFI CCNGG 1 cut(s) 599
SfaNI GCATC 2 cut(s) 15, 87
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 3 cut(s) 210, 267, 502
SsiI CCGC 2 cut(s) 339, 524
SspMI CTAG 2 cut(s) 138, 713
StyD4I CCNGG 1 cut(s) 597
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 1 cut(s) 437
TaqI TCGA 3 cut(s) 150, 249, 463
TasI AATT 3 cut(s) 210, 267, 502
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TseI GCWGC 2 cut(s) 77, 141
TspDTI ATGAA 2 cut(s) 42, 539
TspGWI ACGGA 1 cut(s) 599
XapI RAATTY 1 cut(s) 502
XceI RCATGY 2 cut(s) 46, 109
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 2 cut(s) 138, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.