Rh7CG394800

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000321
Physical Location & Seq
Forward (+)
50247703 .. 50253697
5995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG394800.1

Sequence Viewer

Length: 2220 bp
ATGAAACACTTCAAAGACAATCATTTAGAATGCGATGATGAATATACGGATGAGGATGCAGATGACCAGGCCACAAACAAGAGGAAGGGGAGAGGTCCAACTTTGATGTCAGACTTGGTCCATCGTAGGGGCGGTAAGGGTCGTATAGAAGTTGGATATAACACAAAAGGACAGCCAGAAGGCAAGCATGGATCAAATTTAGCTAGTTTCATAGGAGTAATGGCGCGAAGCACTGTTCCAATTATATATGAAGATTGGAAAGCGGTACCACCTTCTTTAAAGGATAAGATATGGGACATGGTTCTGAAAGCATTCATCGTGGATATGAATAGTAGGAAGCATGTCATAAGCAGTGCTGGAAAGGCATGGAAATCATTCAAGAGCACTTTAACATCATCATATATATTGAAATTCAAACATCAGCCTCACAAGCTAAAGACTCCACCTCTTGGCTATGATTTCATCCTTCAAACACATTGGGATGCCTTTGTGAAGTCTCGATTAACAGAAGAATTTGCAGAAATTAGAGAAGCTGCATCAAGGAGGCGAGCTCTCTATGTATACAATCATCGAATGTCTAGAAAAGGCTATGCCAAATTGGAAGAAGAACTAAAGTTGGCTTCAGGTGACCAAAATGATATTGATCGGTCAGTTCTGTGGAAGAAAGCACGTGTTGATAAAGATGGAAACTACTCAAATGAGGCAGTGAAACAACGTGTTGATAAAATTGATGAAGTGACTAAACATGTTGAGGATGGTATTATATCAACAGCCGGTAGTAATGACATACTAGCAATGGCTTTGGAAAAGCCTGAATATTCCGGTCGTGTAAGAGGTGTTGGAAGCAATGTCACACCTATTTTGTACTTCAATACTCCAAGGTGTCGATCTCAATCCACCCAAAATCAGTTGCTGCAACAAATGGAGCAAATGCAGAACCAGCTTTTAATGTTTACTCAACTGCTACAACCTGATCAATTGTTAATGATGCAACACATGGTCCAAGGTAGCCGTGTGTCTGACAAATCTAGTTGCTCAGTTCAGAAAGACAAATATGAGACATTATCTAAGGAGGAGGTGTCTAGGGTGGAAATGATGAAAGGAATTGAGAAGAAATCTAAGAAAGCTACATTTAACGTCAATGTACAAGAGGCTTTGAAGAGTAGTACTAAAATTCCAGAAGAAATCAAGAAGGTAAAGCAACACAATAAAGAAGAATCAGCTTTGAAACCTGGAAAAAACAAACAAGATGGCTATACAGAGGTTCCCAAAGACAAGCCACAAGATATTGAGAAGTCAAAGAAGTGCAAGTTAGCTGTGGGGAATATCAATAATGTTGTTGCAATGGGAATGGTGATTCCATTAGATGGGGCAATTCATGGAGTGCCATTAGGGGATGGTAACGTACGCGTTTCTGTTGAAGTACCTATCAAGGGTGAGGCTCTTCTACCAATACCTATTGGTGATGAAATTGTGACTCTTAGACAAGCAATTGGGACTCATGTAGCTTGGCCTCGGAATCTTGTCATAATGACCAATGAAAAGCCCAAGCTAAAGATTCCAAATGCATCATTTAAACACTCGTTGCCACAAAACTTGTACAAGATGCCTCTATCTGTGCGATTTCTATTGCGTTTTGCTAAGACAATGCGAGAAGAAAAACCATTGAAGGTGGCCATTGAGTCTGGTGTCTTCGGATATGAACAAGACACTTATCTGAACAAAGATGACGTCATTGAATTTTGTTCGATGGAACCAGTCTCTTCTGTTTGCATGACAATCTACATGAGACATTTGTGGTCATTATTAAAGAAAGATCATAAGGATAACTTGTATGGATTTGCGGATCCATCTTCCTTCTCTCATGATTCTGGAAAACGAGATGAAAGATCGTTTGCATTGTCAATAAGATTAGAGAAAAGCAAGGAACAGCAATTGATTTTTGCTCCTTACAATTTTGGCGCTCTAAGGATGTTTAATGCCCAAAAAGGAAGGAATCGAAAAAATGCTATTTGGAAAATCATACAGTGTCCTACTCAACCTGGAAAAGTGGAATGTGGATATTATGTAATGAAGTTCATGAAAGCAATCATTGAGGATCCAACCATATTAACAAGAAGCAAGTTCAACAACCAAAGTTACAATCAAGAAGAGATAGATGATGTACGAGTAGAGTGGGCTGATCTTGTTGAAACATTACTTCAAGATGATGTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

739

Amino Acids

84.27

Weight (kDa)

9.15

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 157 - 286 2.9e-14 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 427 - 511 1.4e-18 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1734
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 2 cut(s) 449, 1367
AccI GTMKAC 1 cut(s) 561
AccII CGCG 2 cut(s) 226, 1410
AciI CCGC 3 cut(s) 132, 263, 1844
AclWI GGATC 5 cut(s) 199, 1841, 1854, 2093, 2106
AcoI YGGCCR 1 cut(s) 1674
AcsI RAATTY 5 cut(s) 196, 410, 512, 1173, 1739
AcuI CTGAAG 1 cut(s) 606
AcvI CACGTG 1 cut(s) 671
AcyI GRCGYC 1 cut(s) 1731
AfaI GTAC 8 cut(s) 267, 866, 1146, 1168, 1407, 1425, 1601, 2166
AfiI CCNNNNNNNGG 4 cut(s) 127, 449, 1367, 1433
AflIII ACRYGT 4 cut(s) 670, 715, 745, 1408
AjnI CCWGG 3 cut(s) 66, 1231, 2041
Alw21I GWGCWC 2 cut(s) 386, 553
Alw26I GTCTC 4 cut(s) 501, 1052, 1765, 1783
AlwI GGATC 5 cut(s) 199, 1841, 1854, 2093, 2106
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 3 cut(s) 69, 1511, 1674
ApeKI GCWGC 2 cut(s) 533, 913
ApoI RAATTY 5 cut(s) 196, 410, 512, 1173, 1739
ArsI GACNNNNNNTTYG 2 cut(s) 1716, 1748
Asp700I GAANNNNTTC 3 cut(s) 8, 311, 374
Asp718I GGTACC 1 cut(s) 265
AspLEI GCGC 2 cut(s) 226, 1964
AspS9I GGNCC 3 cut(s) 95, 118, 1000
AsuHPI GGTGA 4 cut(s) 638, 1366, 1448, 1475
AvaII GGWCC 3 cut(s) 95, 118, 1000
BalI TGGCCA 1 cut(s) 1676
BamHI GGATCC 2 cut(s) 1846, 2098
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 553
BbrPI CACGTG 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 1684
Bbv12I GWGCWC 2 cut(s) 386, 553
BbvI GCAGC 2 cut(s) 520, 900
BccI CCATC 8 cut(s) 129, 677, 749, 1244, 1361, 1391, 1744, 1858
BceAI ACGGC 1 cut(s) 996
BciT130I CCWGG 3 cut(s) 68, 1233, 2043
BclI TGATCA 1 cut(s) 973
BcoDI GTCTC 4 cut(s) 501, 1052, 1765, 1783
BfaI CTAG 5 cut(s) 204, 579, 791, 1029, 1083
BfoI RGCGCY 1 cut(s) 1965
BisI GCNGC 2 cut(s) 534, 914
BlsI GCNGC 2 cut(s) 535, 915
BmcAI AGTACT 1 cut(s) 1168
Bme1390I CCNGG 3 cut(s) 68, 1233, 2043
Bme18I GGWCC 3 cut(s) 95, 118, 1000
BmgT120I GGNCC 3 cut(s) 95, 118, 1000
BmiI GGNNCC 5 cut(s) 267, 1266, 1755, 1848, 2100
BmrFI CCNGG 3 cut(s) 68, 1233, 2043
BmsI GCATC 6 cut(s) 46, 472, 545, 978, 1577, 1596
BpiI GAAGAC 1 cut(s) 1684
BplI GAGNNNNNCTC 2 cut(s) 535, 567
BsaAI YACGTR 1 cut(s) 671
BsaBI GATNNNNATC 2 cut(s) 642, 892
BsaHI GRCGYC 1 cut(s) 1731
BsaJI CCNNGG 3 cut(s) 878, 1003, 1514
BsaWI WCCGGW 1 cut(s) 821
BsaXI ACNNNNNCTCC 2 cut(s) 1064, 1094
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 449, 1367, 1433
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 1 cut(s) 1757
Bse3DI GCAATG 3 cut(s) 801, 853, 1350
Bse8I GATNNNNATC 2 cut(s) 642, 892
BseBI CCWGG 3 cut(s) 68, 1233, 2043
BseDI CCNNGG 3 cut(s) 878, 1003, 1514
BseGI GGATG 7 cut(s) 55, 61, 462, 487, 760, 1402, 1977
BseJI GATNNNNATC 2 cut(s) 642, 892
BseLI CCNNNNNNNGG 4 cut(s) 127, 449, 1367, 1433
BseMI GCAATG 3 cut(s) 801, 853, 1350
BseMII CTCAG 1 cut(s) 1050
BseNI ACTGG 1 cut(s) 1757
BseRI GAGGAG 1 cut(s) 1088
BseXI GCAGC 2 cut(s) 520, 900
Bsh1236I CGCG 2 cut(s) 226, 1410
Bsh1285I CGRYCG 1 cut(s) 826
BshFI GGCC 3 cut(s) 71, 1513, 1676
BshNI GGYRCC 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 826
BsiHKAI GWGCWC 2 cut(s) 386, 553
BsiSI CCGG 2 cut(s) 774, 822
BsiWI CGTACG 1 cut(s) 1405
BslFI GGGAC 2 cut(s) 308, 1510
BslI CCNNNNNNNGG 4 cut(s) 127, 449, 1367, 1433
BsmAI GTCTC 4 cut(s) 501, 1052, 1765, 1783
BsmFI GGGAC 2 cut(s) 308, 1510
BsmI GAATGC 2 cut(s) 35, 311
BsnI GGCC 3 cut(s) 71, 1513, 1676
Bsp1286I GDGCHC 2 cut(s) 386, 553
Bsp1407I TGTACA 2 cut(s) 1144, 1599
Bsp143I GATC 9 cut(s) 191, 643, 887, 973, 1816, 1846, 1889, 2098, 2182
BspACI CCGC 3 cut(s) 132, 263, 1844
BspANI GGCC 3 cut(s) 71, 1513, 1676
BspCNI CTCAG 1 cut(s) 1049
BspFNI CGCG 2 cut(s) 226, 1410
BspHI TCATGA 2 cut(s) 1864, 2079
BspLI GGNNCC 5 cut(s) 267, 1266, 1755, 1848, 2100
BspPI GGATC 5 cut(s) 199, 1841, 1854, 2093, 2106
BspQI GCTCTTC 1 cut(s) 1449
BspT107I GGYRCC 1 cut(s) 265
BsrDI GCAATG 3 cut(s) 801, 853, 1350
BsrFI RCCGGY 1 cut(s) 773
BsrGI TGTACA 2 cut(s) 1144, 1599
BsrI ACTGG 1 cut(s) 1757
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 3 cut(s) 878, 1003, 1514
BssMI GATC 9 cut(s) 191, 643, 887, 973, 1816, 1846, 1889, 2098, 2182
BssNAI GTATAC 1 cut(s) 562
BssNI GRCGYC 1 cut(s) 1731
BssT1I CCWWGG 2 cut(s) 878, 1003
Bst1107I GTATAC 1 cut(s) 562
Bst2UI CCWGG 3 cut(s) 68, 1233, 2043
Bst4CI ACNGT 2 cut(s) 235, 2028
Bst6I CTCTTC 4 cut(s) 1154, 1449, 1768, 2145
BstACI GRCGYC 1 cut(s) 1731
BstAUI TGTACA 2 cut(s) 1144, 1599
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 2 cut(s) 185, 549
BstDEI CTNAG 6 cut(s) 1036, 1068, 1119, 1481, 1641, 1967
BstEII GGTNACC 1 cut(s) 626
BstF5I GGATG 7 cut(s) 55, 61, 462, 487, 760, 1402, 1977
BstFNI CGCG 2 cut(s) 226, 1410
BstH2I RGCGCY 1 cut(s) 1965
BstHHI GCGC 2 cut(s) 226, 1964
BstKTI GATC 9 cut(s) 194, 646, 890, 976, 1819, 1849, 1892, 2101, 2185
BstMAI GTCTC 4 cut(s) 501, 1052, 1765, 1783
BstMBI GATC 9 cut(s) 191, 643, 887, 973, 1816, 1846, 1889, 2098, 2182
BstMCI CGRYCG 1 cut(s) 826
BstMWI GCNNNNNNNGC 3 cut(s) 362, 430, 940
BstNI CCWGG 3 cut(s) 68, 1233, 2043
BstNSI RCATGY 2 cut(s) 344, 749
BstPI GGTNACC 1 cut(s) 626
BstSCI CCNGG 3 cut(s) 66, 1231, 2041
BstUI CGCG 2 cut(s) 226, 1410
BstV1I GCAGC 2 cut(s) 520, 900
BstV2I GAAGAC 1 cut(s) 1684
BstX2I RGATCY 2 cut(s) 1846, 2098
BstYI RGATCY 2 cut(s) 1846, 2098
BstZ17I GTATAC 1 cut(s) 562
BsuRI GGCC 3 cut(s) 71, 1513, 1676
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 7 cut(s) 55, 61, 462, 487, 760, 1402, 1977
BtsI GCAGTG 2 cut(s) 358, 711
BtsIMutI CAGTG 4 cut(s) 231, 358, 711, 2033
Cac8I GCNNGC 2 cut(s) 185, 549
CaiI CAGNNNCTG 1 cut(s) 913
CciI TCATGA 2 cut(s) 1864, 2079
CfoI GCGC 2 cut(s) 226, 1964
Cfr10I RCCGGY 1 cut(s) 773
Cfr13I GGNCC 3 cut(s) 95, 118, 1000
Csp6I GTAC 8 cut(s) 266, 865, 1145, 1167, 1406, 1424, 1600, 2165
CspCI CAANNNNNGTGG 2 cut(s) 1578, 1613
CviQI GTAC 8 cut(s) 266, 865, 1145, 1167, 1406, 1424, 1600, 2165
DdeI CTNAG 6 cut(s) 1036, 1068, 1119, 1481, 1641, 1967
DpnI GATC 9 cut(s) 193, 645, 889, 975, 1818, 1848, 1891, 2100, 2184
DpnII GATC 9 cut(s) 191, 643, 887, 973, 1816, 1846, 1889, 2098, 2182
DraI TTTAAA 2 cut(s) 279, 1576
EaeI YGGCCR 1 cut(s) 1674
Eam1104I CTCTTC 4 cut(s) 1154, 1449, 1768, 2145
EarI CTCTTC 4 cut(s) 1154, 1449, 1768, 2145
Ecl136II GAGCTC 1 cut(s) 551
Eco130I CCWWGG 2 cut(s) 878, 1003
Eco24I GRGCYC 1 cut(s) 553
Eco47I GGWCC 3 cut(s) 95, 118, 1000
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 606
Eco72I CACGTG 1 cut(s) 671
Eco91I GGTNACC 1 cut(s) 626
EcoICRI GAGCTC 1 cut(s) 551
EcoO65I GGTNACC 1 cut(s) 626
EcoRII CCWGG 3 cut(s) 66, 1231, 2041
EcoT14I CCWWGG 2 cut(s) 878, 1003
EcoT22I ATGCAT 1 cut(s) 1570
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 2 cut(s) 878, 1003
FalI AAGNNNNNCTT 2 cut(s) 1814, 1846
FaqI GGGAC 2 cut(s) 308, 1510
FbaI TGATCA 1 cut(s) 973
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 534, 914
FokI GGATG 7 cut(s) 62, 68, 449, 494, 767, 1409, 1984
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 2 cut(s) 534, 914
FspBI CTAG 5 cut(s) 204, 579, 791, 1029, 1083
GlaI GCGC 2 cut(s) 225, 1963
GluI GCNGC 2 cut(s) 534, 914
HaeII RGCGCY 1 cut(s) 1965
HaeIII GGCC 3 cut(s) 71, 1513, 1676
HapII CCGG 2 cut(s) 774, 822
HhaI GCGC 2 cut(s) 226, 1964
Hin1I GRCGYC 1 cut(s) 1731
Hin6I GCGC 2 cut(s) 224, 1962
HinP1I GCGC 2 cut(s) 224, 1962
HpaII CCGG 2 cut(s) 774, 822
HphI GGTGA 4 cut(s) 638, 1366, 1448, 1475
Hpy166II GTNNAC 2 cut(s) 562, 954
Hpy188I TCNGA 7 cut(s) 112, 306, 1021, 1044, 1518, 1697, 1719
Hpy8I GTNNAC 2 cut(s) 562, 954
HpyAV CCTTC 8 cut(s) 79, 173, 282, 476, 1186, 1663, 1867, 1986
HpyCH4III ACNGT 2 cut(s) 235, 2028
HpyCH4IV ACGT 5 cut(s) 670, 715, 1137, 1404, 1731
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 430, 940
HpyF3I CTNAG 6 cut(s) 1036, 1068, 1119, 1481, 1641, 1967
HpySE526I ACGT 5 cut(s) 670, 715, 1137, 1404, 1731
Hsp92I GRCGYC 1 cut(s) 1731
HspAI GCGC 2 cut(s) 224, 1962
KpnI GGTACC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 973
Kzo9I GATC 9 cut(s) 191, 643, 887, 973, 1816, 1846, 1889, 2098, 2182
LguI GCTCTTC 1 cut(s) 1449
LmnI GCTCC 2 cut(s) 925, 1951
Lsp1109I GCAGC 2 cut(s) 520, 900
LweI GCATC 6 cut(s) 46, 472, 545, 978, 1577, 1596
MaeI CTAG 5 cut(s) 204, 579, 791, 1029, 1083
MaeII ACGT 5 cut(s) 670, 715, 1137, 1404, 1731
MaeIII GTNAC 6 cut(s) 626, 736, 850, 1400, 1474, 2138
MalI GATC 9 cut(s) 193, 645, 889, 975, 1818, 1848, 1891, 2100, 2184
MboI GATC 9 cut(s) 191, 643, 887, 973, 1816, 1846, 1889, 2098, 2182
MfeI CAATTG 3 cut(s) 977, 1491, 1934
MflI RGATCY 2 cut(s) 1846, 2098
MhlI GDGCHC 2 cut(s) 386, 553
MlsI TGGCCA 1 cut(s) 1676
MluI ACGCGT 1 cut(s) 1408
MluNI TGGCCA 1 cut(s) 1676
MlyI GAGTC 4 cut(s) 433, 1471, 1492, 1691
MmeI TCCRAC 4 cut(s) 122, 133, 820, 2126
Mox20I TGGCCA 1 cut(s) 1676
Mph1103I ATGCAT 1 cut(s) 1570
MroXI GAANNNNTTC 3 cut(s) 8, 311, 374
MscI TGGCCA 1 cut(s) 1676
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 1676
MspI CCGG 2 cut(s) 774, 822
MspR9I CCNGG 3 cut(s) 68, 1233, 2043
MunI CAATTG 3 cut(s) 977, 1491, 1934
Mva1269I GAATGC 2 cut(s) 35, 311
MvaI CCWGG 3 cut(s) 68, 1233, 2043
MvnI CGCG 2 cut(s) 226, 1410
MwoI GCNNNNNNNGC 3 cut(s) 362, 430, 940
NdeII GATC 9 cut(s) 191, 643, 887, 973, 1816, 1846, 1889, 2098, 2182
NlaIV GGNNCC 5 cut(s) 267, 1266, 1755, 1848, 2100
NmuCI GTSAC 4 cut(s) 626, 736, 850, 1474
NsiI ATGCAT 1 cut(s) 1570
NspI RCATGY 2 cut(s) 344, 749
PagI TCATGA 2 cut(s) 1864, 2079
PciI ACATGT 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 1449
PctI GAATGC 2 cut(s) 35, 311
PdmI GAANNNNTTC 3 cut(s) 8, 311, 374
PfeI GAWTC 6 cut(s) 1217, 1357, 1519, 1558, 1868, 1996
Pfl23II CGTACG 1 cut(s) 1405
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 2 cut(s) 449, 1367
PkrI GCNGC 2 cut(s) 535, 915
PleI GAGTC 4 cut(s) 433, 1471, 1492, 1690
PmaCI CACGTG 1 cut(s) 671
PmlI CACGTG 1 cut(s) 671
PpsI GAGTC 4 cut(s) 433, 1471, 1492, 1690
Ppu21I YACGTR 1 cut(s) 671
PscI ACATGT 1 cut(s) 745
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 3 cut(s) 66, 1231, 2041
PspCI CACGTG 1 cut(s) 671
PspEI GGTNACC 1 cut(s) 626
PspGI CCWGG 3 cut(s) 66, 1231, 2041
PspLI CGTACG 1 cut(s) 1405
PspN4I GGNNCC 5 cut(s) 267, 1266, 1755, 1848, 2100
PspPI GGNCC 3 cut(s) 95, 118, 1000
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 2 cut(s) 1846, 2098
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 8 cut(s) 267, 866, 1146, 1168, 1407, 1425, 1601, 2166
RsaNI GTAC 8 cut(s) 266, 865, 1145, 1167, 1406, 1424, 1600, 2165
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 553
SapI GCTCTTC 1 cut(s) 1449
SatI GCNGC 2 cut(s) 534, 914
Sau3AI GATC 9 cut(s) 191, 643, 887, 973, 1816, 1846, 1889, 2098, 2182
Sau96I GGNCC 3 cut(s) 95, 118, 1000
ScaI AGTACT 1 cut(s) 1168
SchI GAGTC 4 cut(s) 433, 1471, 1492, 1691
ScrFI CCNGG 3 cut(s) 68, 1233, 2043
SduI GDGCHC 2 cut(s) 386, 553
SfaNI GCATC 6 cut(s) 46, 472, 545, 978, 1577, 1596
SinI GGWCC 3 cut(s) 95, 118, 1000
SmiMI CAYNNNNRTG 1 cut(s) 480
SsiI CCGC 3 cut(s) 132, 263, 1844
SspI AATATT 1 cut(s) 818
SspMI CTAG 5 cut(s) 204, 579, 791, 1029, 1083
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 3 cut(s) 66, 1231, 2041
StyI CCWWGG 2 cut(s) 878, 1003
TaaI ACNGT 2 cut(s) 235, 2028
TaiI ACGT 5 cut(s) 673, 718, 1140, 1407, 1734
TaqI TCGA 5 cut(s) 499, 571, 886, 1748, 1999
TaqII GACCGA 1 cut(s) 636
TatI WGTACW 4 cut(s) 864, 1144, 1166, 1599
TfiI GAWTC 6 cut(s) 1217, 1357, 1519, 1558, 1868, 1996
TscAI CASTG 4 cut(s) 238, 358, 711, 2033
TseFI GTSAC 4 cut(s) 626, 736, 850, 1474
TseI GCWGC 2 cut(s) 533, 913
Tsp45I GTSAC 4 cut(s) 626, 736, 850, 1474
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 4 cut(s) 238, 358, 711, 2033
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 2 cut(s) 449, 1367
VpaK11BI GGWCC 3 cut(s) 95, 118, 1000
XapI RAATTY 5 cut(s) 196, 410, 512, 1173, 1739
XbaI TCTAGA 1 cut(s) 578
XceI RCATGY 2 cut(s) 344, 749
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 3 cut(s) 8, 311, 374
XspI CTAG 5 cut(s) 204, 579, 791, 1029, 1083
ZraI GACGTC 1 cut(s) 1732
ZrmI AGTACT 1 cut(s) 1168
Zsp2I ATGCAT 1 cut(s) 1570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.