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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1608 |
| AciI | CCGC | 2 cut(s) | 1122, 1510 |
| AclWI | GGATC | 9 cut(s) | 12, 290, 303, 839, 852, 916, 1384, 1488, 1496 |
| AcoI | YGGCCR | 2 cut(s) | 230, 1507 |
| AcsI | RAATTY | 3 cut(s) | 431, 485, 495 |
| AcuI | CTGAAG | 2 cut(s) | 51, 441 |
| AdeI | CACNNNGTG | 1 cut(s) | 739 |
| AfaI | GTAC | 1 cut(s) | 743 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1098 |
| AflIII | ACRYGT | 2 cut(s) | 825, 888 |
| AgsI | TTSAA | 7 cut(s) | 352, 382, 895, 998, 1227, 1465, 1726 |
| AjnI | CCWGG | 4 cut(s) | 551, 697, 1504, 1699 |
| Alw21I | GWGCWC | 2 cut(s) | 359, 1214 |
| Alw26I | GTCTC | 5 cut(s) | 218, 511, 677, 879, 1438 |
| AlwI | GGATC | 9 cut(s) | 12, 290, 303, 839, 852, 916, 1384, 1488, 1496 |
| AoxI | GGCC | 2 cut(s) | 230, 1507 |
| ApeKI | GCWGC | 5 cut(s) | 863, 924, 1250, 1408, 1634 |
| ApoI | RAATTY | 3 cut(s) | 431, 485, 495 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 661, 693 |
| AseI | ATTAAT | 1 cut(s) | 1592 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 284, 347 |
| AspLEI | GCGC | 2 cut(s) | 1290, 1603 |
| AspS9I | GGNCC | 3 cut(s) | 68, 505, 1327 |
| AsuII | TTCGAA | 1 cut(s) | 1024 |
| AsuNHI | GCTAGC | 2 cut(s) | 172, 920 |
| AvaII | GGWCC | 3 cut(s) | 68, 505, 1327 |
| BaeGI | GKGCMC | 1 cut(s) | 1555 |
| BalI | TGGCCA | 1 cut(s) | 232 |
| BamHI | GGATCC | 3 cut(s) | 4, 295, 844 |
| BanII | GRGCYC | 1 cut(s) | 115 |
| Bbv12I | GWGCWC | 2 cut(s) | 359, 1214 |
| BbvI | GCAGC | 5 cut(s) | 875, 911, 1262, 1420, 1621 |
| BccI | CCATC | 2 cut(s) | 1051, 1334 |
| BceAI | ACGGC | 1 cut(s) | 221 |
| BciT130I | CCWGG | 4 cut(s) | 553, 699, 1506, 1701 |
| BcoDI | GTCTC | 5 cut(s) | 218, 511, 677, 879, 1438 |
| BfaI | CTAG | 4 cut(s) | 173, 756, 921, 1542 |
| BfmI | CTRYAG | 1 cut(s) | 1314 |
| BisI | GCNGC | 7 cut(s) | 864, 925, 1122, 1251, 1409, 1510, 1635 |
| BlsI | GCNGC | 7 cut(s) | 865, 926, 1123, 1252, 1410, 1511, 1636 |
| Bme1390I | CCNGG | 4 cut(s) | 553, 699, 1506, 1701 |
| Bme18I | GGWCC | 3 cut(s) | 68, 505, 1327 |
| BmgT120I | GGNCC | 3 cut(s) | 68, 505, 1327 |
| BmiI | GGNNCC | 5 cut(s) | 6, 297, 401, 846, 1329 |
| BmrFI | CCNGG | 4 cut(s) | 553, 699, 1506, 1701 |
| BmtI | GCTAGC | 2 cut(s) | 176, 924 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 494, 526 |
| Bpu10I | CCTNAGC | 1 cut(s) | 690 |
| Bpu14I | TTCGAA | 1 cut(s) | 1024 |
| BpuEI | CTTGAG | 2 cut(s) | 496, 657 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 387, 417 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1098 |
| Bse118I | RCCGGY | 1 cut(s) | 1264 |
| Bse1I | ACTGG | 2 cut(s) | 594, 1177 |
| Bse3DI | GCAATG | 1 cut(s) | 1360 |
| BseBI | CCWGG | 4 cut(s) | 553, 699, 1506, 1701 |
| BseGI | GGATG | 4 cut(s) | 598, 865, 980, 1312 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1098 |
| BseMI | GCAATG | 1 cut(s) | 1360 |
| BseMII | CTCAG | 5 cut(s) | 461, 588, 681, 942, 1229 |
| BseNI | ACTGG | 2 cut(s) | 594, 1177 |
| BseRI | GAGGAG | 2 cut(s) | 593, 977 |
| BseSI | GKGCMC | 1 cut(s) | 1555 |
| BseXI | GCAGC | 5 cut(s) | 875, 911, 1262, 1420, 1621 |
| BsgI | GTGCAG | 1 cut(s) | 348 |
| BshFI | GGCC | 2 cut(s) | 232, 1509 |
| BsiHKAI | GWGCWC | 2 cut(s) | 359, 1214 |
| BsiSI | CCGG | 1 cut(s) | 1265 |
| BslFI | GGGAC | 1 cut(s) | 1313 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1098 |
| BsmAI | GTCTC | 5 cut(s) | 218, 511, 677, 879, 1438 |
| BsmBI | CGTCTC | 1 cut(s) | 511 |
| BsmFI | GGGAC | 1 cut(s) | 1313 |
| BsnI | GGCC | 2 cut(s) | 232, 1509 |
| Bsp119I | TTCGAA | 1 cut(s) | 1024 |
| Bsp1286I | GDGCHC | 4 cut(s) | 115, 359, 1214, 1555 |
| BspACI | CCGC | 2 cut(s) | 1122, 1510 |
| BspANI | GGCC | 2 cut(s) | 232, 1509 |
| BspCNI | CTCAG | 5 cut(s) | 460, 589, 682, 941, 1228 |
| BspHI | TCATGA | 2 cut(s) | 499, 529 |
| BspLI | GGNNCC | 5 cut(s) | 6, 297, 401, 846, 1329 |
| BspOI | GCTAGC | 2 cut(s) | 176, 924 |
| BspPI | GGATC | 9 cut(s) | 12, 290, 303, 839, 852, 916, 1384, 1488, 1496 |
| BspT104I | TTCGAA | 1 cut(s) | 1024 |
| BsrDI | GCAATG | 1 cut(s) | 1360 |
| BsrFI | RCCGGY | 1 cut(s) | 1264 |
| BsrI | ACTGG | 2 cut(s) | 594, 1177 |
| BssAI | RCCGGY | 1 cut(s) | 1264 |
| Bst2UI | CCWGG | 4 cut(s) | 553, 699, 1506, 1701 |
| Bst4CI | ACNGT | 2 cut(s) | 798, 1379 |
| Bst6I | CTCTTC | 3 cut(s) | 58, 161, 570 |
| BstBI | TTCGAA | 1 cut(s) | 1024 |
| BstC8I | GCNNGC | 4 cut(s) | 174, 234, 768, 922 |
| BstDEI | CTNAG | 7 cut(s) | 447, 597, 690, 872, 928, 1215, 1562 |
| BstF5I | GGATG | 4 cut(s) | 598, 865, 980, 1312 |
| BstHHI | GCGC | 2 cut(s) | 1290, 1603 |
| BstMAI | GTCTC | 5 cut(s) | 218, 511, 677, 879, 1438 |
| BstNI | CCWGG | 4 cut(s) | 553, 699, 1506, 1701 |
| BstNSI | RCATGY | 2 cut(s) | 829, 892 |
| BstSCI | CCNGG | 4 cut(s) | 551, 697, 1504, 1699 |
| BstSFI | CTRYAG | 1 cut(s) | 1314 |
| BstSLI | GKGCMC | 1 cut(s) | 1555 |
| BstV1I | GCAGC | 5 cut(s) | 875, 911, 1262, 1420, 1621 |
| BstX2I | RGATCY | 5 cut(s) | 4, 295, 844, 908, 1501 |
| BstYI | RGATCY | 5 cut(s) | 4, 295, 844, 908, 1501 |
| BsuRI | GGCC | 2 cut(s) | 232, 1509 |
| BtsCI | GGATG | 4 cut(s) | 598, 865, 980, 1312 |
| BtsI | GCAGTG | 1 cut(s) | 1326 |
| BtsIMutI | CAGTG | 2 cut(s) | 455, 1326 |
| Cac8I | GCNNGC | 4 cut(s) | 174, 234, 768, 922 |
| CciI | TCATGA | 2 cut(s) | 499, 529 |
| CfoI | GCGC | 2 cut(s) | 1290, 1603 |
| Cfr10I | RCCGGY | 1 cut(s) | 1264 |
| Cfr13I | GGNCC | 3 cut(s) | 68, 505, 1327 |
| CsiI | ACCWGGT | 1 cut(s) | 697 |
| Csp6I | GTAC | 1 cut(s) | 742 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 431, 466 |
| CviQI | GTAC | 1 cut(s) | 742 |
| DdeI | CTNAG | 7 cut(s) | 447, 597, 690, 872, 928, 1215, 1562 |
| DraIII | CACNNNGTG | 1 cut(s) | 739 |
| EaeI | YGGCCR | 2 cut(s) | 230, 1507 |
| Eam1104I | CTCTTC | 3 cut(s) | 58, 161, 570 |
| EarI | CTCTTC | 3 cut(s) | 58, 161, 570 |
| Eco24I | GRGCYC | 1 cut(s) | 115 |
| Eco47I | GGWCC | 3 cut(s) | 68, 505, 1327 |
| Eco57I | CTGAAG | 2 cut(s) | 51, 441 |
| EcoRII | CCWGG | 4 cut(s) | 551, 697, 1504, 1699 |
| EcoT22I | ATGCAT | 1 cut(s) | 1495 |
| EcoT38I | GRGCYC | 1 cut(s) | 115 |
| Esp3I | CGTCTC | 1 cut(s) | 511 |
| FaqI | GGGAC | 1 cut(s) | 1313 |
| FauNDI | CATATG | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 7 cut(s) | 864, 925, 1122, 1251, 1409, 1510, 1635 |
| FokI | GGATG | 4 cut(s) | 605, 872, 967, 1319 |
| FriOI | GRGCYC | 1 cut(s) | 115 |
| Fsp4HI | GCNGC | 7 cut(s) | 864, 925, 1122, 1251, 1409, 1510, 1635 |
| FspBI | CTAG | 4 cut(s) | 173, 756, 921, 1542 |
| GlaI | GCGC | 2 cut(s) | 1289, 1602 |
| GluI | GCNGC | 7 cut(s) | 864, 925, 1122, 1251, 1409, 1510, 1635 |
| HaeIII | GGCC | 2 cut(s) | 232, 1509 |
| HapII | CCGG | 1 cut(s) | 1265 |
| HhaI | GCGC | 2 cut(s) | 1290, 1603 |
| Hin6I | GCGC | 2 cut(s) | 1288, 1601 |
| HinP1I | GCGC | 2 cut(s) | 1288, 1601 |
| HincII | GTYRAC | 1 cut(s) | 1182 |
| HindII | GTYRAC | 1 cut(s) | 1182 |
| HindIII | AAGCTT | 2 cut(s) | 456, 675 |
| HinfI | GANTC | 4 cut(s) | 670, 1310, 1571, 1618 |
| HpaII | CCGG | 1 cut(s) | 1265 |
| Hpy166II | GTNNAC | 2 cut(s) | 742, 1182 |
| Hpy188I | TCNGA | 8 cut(s) | 31, 49, 78, 85, 279, 657, 913, 1218 |
| Hpy188III | TCNNGA | 8 cut(s) | 8, 352, 471, 482, 500, 530, 756, 848 |
| Hpy8I | GTNNAC | 2 cut(s) | 742, 1182 |
| Hpy99I | CGWCG | 1 cut(s) | 399 |
| HpyAV | CCTTC | 3 cut(s) | 52, 327, 1069 |
| HpyCH4III | ACNGT | 2 cut(s) | 798, 1379 |
| HpyCH4V | TGCA | 9 cut(s) | 329, 770, 811, 863, 1242, 1276, 1408, 1428, 1493 |
| HpyF3I | CTNAG | 7 cut(s) | 447, 597, 690, 872, 928, 1215, 1562 |
| HspAI | GCGC | 2 cut(s) | 1288, 1601 |
| LmnI | GCTCC | 2 cut(s) | 399, 580 |
| Lsp1109I | GCAGC | 5 cut(s) | 875, 911, 1262, 1420, 1621 |
| MabI | ACCWGGT | 1 cut(s) | 697 |
| MaeI | CTAG | 4 cut(s) | 173, 756, 921, 1542 |
| MaeIII | GTNAC | 4 cut(s) | 124, 727, 1379, 1682 |
| MfeI | CAATTG | 2 cut(s) | 150, 1050 |
| MflI | RGATCY | 5 cut(s) | 4, 295, 844, 908, 1501 |
| MhlI | GDGCHC | 4 cut(s) | 115, 359, 1214, 1555 |
| MlsI | TGGCCA | 1 cut(s) | 232 |
| MluNI | TGGCCA | 1 cut(s) | 232 |
| MlyI | GAGTC | 2 cut(s) | 664, 1580 |
| MmeI | TCCRAC | 5 cut(s) | 95, 635, 768, 780, 837 |
| Mox20I | TGGCCA | 1 cut(s) | 232 |
| Mph1103I | ATGCAT | 1 cut(s) | 1495 |
| MroXI | GAANNNNTTC | 2 cut(s) | 284, 347 |
| MscI | TGGCCA | 1 cut(s) | 232 |
| MseI | TTAA | 8 cut(s) | 252, 362, 476, 614, 747, 1592, 1641, 1689 |
| MslI | CAYNNNNRTG | 2 cut(s) | 534, 1488 |
| Msp20I | TGGCCA | 1 cut(s) | 232 |
| MspI | CCGG | 1 cut(s) | 1265 |
| MspR9I | CCNGG | 4 cut(s) | 553, 699, 1506, 1701 |
| MunI | CAATTG | 2 cut(s) | 150, 1050 |
| MvaI | CCWGG | 4 cut(s) | 553, 699, 1506, 1701 |
| NdeI | CATATG | 1 cut(s) | 220 |
| NheI | GCTAGC | 2 cut(s) | 172, 920 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 297, 401, 846, 1329 |
| NmuCI | GTSAC | 1 cut(s) | 124 |
| NsiI | ATGCAT | 1 cut(s) | 1495 |
| NspI | RCATGY | 2 cut(s) | 829, 892 |
| NspV | TTCGAA | 1 cut(s) | 1024 |
| PagI | TCATGA | 2 cut(s) | 499, 529 |
| PciI | ACATGT | 2 cut(s) | 825, 888 |
| PdmI | GAANNNNTTC | 2 cut(s) | 284, 347 |
| PfeI | GAWTC | 2 cut(s) | 1310, 1618 |
| PflFI | GACNNNGTC | 1 cut(s) | 699 |
| PfoI | TCCNGGA | 2 cut(s) | 551, 1699 |
| PkrI | GCNGC | 7 cut(s) | 865, 926, 1123, 1252, 1410, 1511, 1636 |
| PleI | GAGTC | 2 cut(s) | 664, 1579 |
| PpsI | GAGTC | 2 cut(s) | 664, 1579 |
| PscI | ACATGT | 2 cut(s) | 825, 888 |
| PshBI | ATTAAT | 1 cut(s) | 1592 |
| PsiI | TTATAA | 1 cut(s) | 1608 |
| Psp6I | CCWGG | 4 cut(s) | 551, 697, 1504, 1699 |
| PspGI | CCWGG | 4 cut(s) | 551, 697, 1504, 1699 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 297, 401, 846, 1329 |
| PspPI | GGNCC | 3 cut(s) | 68, 505, 1327 |
| PsuI | RGATCY | 5 cut(s) | 4, 295, 844, 908, 1501 |
| PsyI | GACNNNGTC | 1 cut(s) | 699 |
| RsaI | GTAC | 1 cut(s) | 743 |
| RsaNI | GTAC | 1 cut(s) | 742 |
| RseI | CAYNNNNRTG | 2 cut(s) | 534, 1488 |
| SaqAI | TTAA | 8 cut(s) | 252, 362, 476, 614, 747, 1592, 1641, 1689 |
| SatI | GCNGC | 7 cut(s) | 864, 925, 1122, 1251, 1409, 1510, 1635 |
| Sau96I | GGNCC | 3 cut(s) | 68, 505, 1327 |
| SchI | GAGTC | 2 cut(s) | 664, 1580 |
| ScrFI | CCNGG | 4 cut(s) | 553, 699, 1506, 1701 |
| SduI | GDGCHC | 4 cut(s) | 115, 359, 1214, 1555 |
| SexAI | ACCWGGT | 1 cut(s) | 697 |
| SfcI | CTRYAG | 1 cut(s) | 1314 |
| SfuI | TTCGAA | 1 cut(s) | 1024 |
| SinI | GGWCC | 3 cut(s) | 68, 505, 1327 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 534, 1488 |
| SmlI | CTYRAG | 2 cut(s) | 511, 672 |
| SmoI | CTYRAG | 2 cut(s) | 511, 672 |
| SsiI | CCGC | 2 cut(s) | 1122, 1510 |
| SspMI | CTAG | 4 cut(s) | 173, 756, 921, 1542 |
| StyD4I | CCNGG | 4 cut(s) | 551, 697, 1504, 1699 |
| TaaI | ACNGT | 2 cut(s) | 798, 1379 |
| TaqI | TCGA | 8 cut(s) | 115, 199, 394, 472, 544, 933, 1024, 1032 |
| TaqII | GACCGA | 1 cut(s) | 1315 |
| TatI | WGTACW | 1 cut(s) | 741 |
| TauI | GCSGC | 2 cut(s) | 1124, 1512 |
| TfiI | GAWTC | 2 cut(s) | 1310, 1618 |
| Tru1I | TTAA | 8 cut(s) | 252, 362, 476, 614, 747, 1592, 1641, 1689 |
| Tru9I | TTAA | 8 cut(s) | 252, 362, 476, 614, 747, 1592, 1641, 1689 |
| TscAI | CASTG | 2 cut(s) | 455, 1326 |
| TseFI | GTSAC | 1 cut(s) | 124 |
| TseI | GCWGC | 5 cut(s) | 863, 924, 1250, 1408, 1634 |
| Tsp45I | GTSAC | 1 cut(s) | 124 |
| TspGWI | ACGGA | 1 cut(s) | 412 |
| TspRI | CASTG | 2 cut(s) | 455, 1326 |
| Tth111I | GACNNNGTC | 1 cut(s) | 699 |
| VpaK11BI | GGWCC | 3 cut(s) | 68, 505, 1327 |
| VspI | ATTAAT | 1 cut(s) | 1592 |
| XapI | RAATTY | 3 cut(s) | 431, 485, 495 |
| XbaI | TCTAGA | 1 cut(s) | 755 |
| XceI | RCATGY | 2 cut(s) | 829, 892 |
| XmnI | GAANNNNTTC | 2 cut(s) | 284, 347 |
| XspI | CTAG | 4 cut(s) | 173, 756, 921, 1542 |
| Zsp2I | ATGCAT | 1 cut(s) | 1495 |