Rorug01G0094700

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000321
Physical Location & Seq
Forward (+)
15623496 .. 15624376
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0094700.1

Sequence Viewer

Length: 798 bp
ATGGTTCTGCTAAAAGATAAGTTGGCTATTTTGAGGGTTCGCATCAATGGGAATCTGGAACTTGTAGATGGGAAGCATAATTTAGTCTGGTCAACCAATACTAGTGTTGTTCAGGTACCATCATCCAATACTAGTTCAATTGTTGCATATCTTTCAGACAAAGGAATCTTTATTGTCGAAGATAAAGTAAGAGGACATCAATTGTGGGATAGTTTCGGTCACCCTAGAGATACAATCTTACCAGCTGAACAAATGCTAGAATTCAATAGTAAATATGGAACGAAGAATGTCATGATGTCCTGGAAAAGTGAGAATGATCCATCAACTGGGAAATATTTGGTTGGATTGACCCCTGAGACACCAACACAATTGTTCAGTTGGATAAATGGATCAATTCCCCACTGGAGGAGTGAGCCTTGGGATAAATCAAAGTTCATTGGAATATCAGATATGGATGATCGATATGGAAGTGGATTTAGTTTGAAAGAAGATAAAACACAAGGATCAAAGTATTTCTCTTATTCTTTTTCTGAGGGTATACTCGCATATGTAGACATCTCTTCAAAAGGAATATCAAACCTTATGCTATCAAATGGTGGCAAGGACTGGCATGCAAACTTCAGGGGACCAAAATTTCAATGCGACTATTATGGAGCATGCGGACCTTTTGGTGTTTGCAAAGATTTTGAATCTCCAATATGTAAGTGTTTGAAAGGGTTTGTACCAAAGTCACATGAGGAATGGAGCGAAGGAAACTGGACAGGAGGTTGTGTGAGGCGAACCAAATTGTTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

265

Amino Acids

29.8

Weight (kDa)

8.08

Isoelectric Point (pI)

22.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 5 - 102 1.3e-16 D-mannose binding lectin
S_locus_glycop PF00954 135 - 244 1.1e-26 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 115
AccB1I GGYRCC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 2 cut(s) 538, 552
AciI CCGC 1 cut(s) 660
AclWI GGATC 3 cut(s) 311, 397, 511
AcsI RAATTY 2 cut(s) 260, 632
AcuI CTGAAG 1 cut(s) 604
AfaI GTAC 2 cut(s) 117, 723
AfiI CCNNNNNNNGG 2 cut(s) 326, 405
AgsI TTSAA 7 cut(s) 138, 265, 484, 564, 638, 689, 712
AhlI ACTAGT 2 cut(s) 101, 131
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 3 cut(s) 311, 397, 511
ApoI RAATTY 2 cut(s) 260, 632
Asp718I GGTACC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 626, 662
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 2 cut(s) 626, 662
BanI GGYRCC 1 cut(s) 115
BccI CCATC 3 cut(s) 62, 127, 328
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 350
BcuI ACTAGT 2 cut(s) 101, 131
BfaI CTAG 4 cut(s) 102, 132, 225, 257
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 2 cut(s) 626, 662
BmgT120I GGNCC 2 cut(s) 626, 662
BmiI GGNNCC 2 cut(s) 117, 627
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 424
Bsa29I ATCGAT 1 cut(s) 460
BsaJI CCNNGG 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 405
Bse1I ACTGG 4 cut(s) 331, 407, 611, 761
BseBI CCWGG 1 cut(s) 301
BseCI ATCGAT 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 2 cut(s) 122, 460
BseLI CCNNNNNNNGG 2 cut(s) 326, 405
BseMII CTCAG 2 cut(s) 345, 522
BseNI ACTGG 4 cut(s) 331, 407, 611, 761
BseRI GAGGAG 1 cut(s) 421
BshNI GGYRCC 1 cut(s) 115
BshVI ATCGAT 1 cut(s) 460
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 2 cut(s) 326, 405
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 639
Bsp143I GATC 4 cut(s) 316, 389, 457, 503
BspACI CCGC 1 cut(s) 660
BspCNI CTCAG 2 cut(s) 346, 523
BspDI ATCGAT 1 cut(s) 460
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 117, 627
BspPI GGATC 3 cut(s) 311, 397, 511
BspT107I GGYRCC 1 cut(s) 115
BsrI ACTGG 4 cut(s) 331, 407, 611, 761
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 4 cut(s) 316, 389, 457, 503
BssNAI GTATAC 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 416
Bst1107I GTATAC 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 612, 658
BstDEI CTNAG 2 cut(s) 354, 531
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 2 cut(s) 122, 460
BstKTI GATC 4 cut(s) 319, 392, 460, 506
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 4 cut(s) 316, 389, 457, 503
BstNI CCWGG 1 cut(s) 301
BstNSI RCATGY 2 cut(s) 614, 660
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 299
BstZ17I GTATAC 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 460
BsuTUI ATCGAT 1 cut(s) 460
BtsCI GGATG 2 cut(s) 122, 460
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 612, 658
CciI TCATGA 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 626, 662
ClaI ATCGAT 1 cut(s) 460
Csp6I GTAC 2 cut(s) 116, 722
CviAII CATG 4 cut(s) 292, 611, 657, 734
CviJI RGCY 3 cut(s) 26, 245, 415
CviKI_1 RGCY 3 cut(s) 26, 245, 415
CviQI GTAC 2 cut(s) 116, 722
DdeI CTNAG 2 cut(s) 354, 531
DpnI GATC 4 cut(s) 318, 391, 459, 505
DpnII GATC 4 cut(s) 316, 389, 457, 503
Eam1104I CTCTTC 1 cut(s) 565
EarI CTCTTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 416
Eco47I GGWCC 2 cut(s) 626, 662
Eco57I CTGAAG 1 cut(s) 604
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 4 cut(s) 295, 614, 660, 737
FaqI GGGAC 1 cut(s) 639
FatI CATG 4 cut(s) 291, 610, 656, 733
FauNDI CATATG 1 cut(s) 547
FblI GTMKAC 2 cut(s) 538, 552
FokI GGATG 2 cut(s) 109, 467
FspBI CTAG 4 cut(s) 102, 132, 225, 257
GsuI CTGGAG 1 cut(s) 424
Hin1II CATG 4 cut(s) 295, 614, 660, 737
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 3 cut(s) 52, 165, 689
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 3 cut(s) 93, 539, 553
Hpy188I TCNGA 3 cut(s) 157, 448, 532
Hpy188III TCNNGA 2 cut(s) 56, 292
Hpy8I GTNNAC 3 cut(s) 93, 539, 553
HpyAV CCTTC 1 cut(s) 743
HpyCH4V TGCA 3 cut(s) 146, 614, 678
HpyF3I CTNAG 2 cut(s) 354, 531
Hsp92II CATG 4 cut(s) 295, 614, 660, 737
KpnI GGTACC 1 cut(s) 119
Kzo9I GATC 4 cut(s) 316, 389, 457, 503
LmnI GCTCC 2 cut(s) 653, 744
LweI GCATC 1 cut(s) 51
MaeI CTAG 4 cut(s) 102, 132, 225, 257
MaeIII GTNAC 2 cut(s) 218, 729
MalI GATC 4 cut(s) 318, 391, 459, 505
MboI GATC 4 cut(s) 316, 389, 457, 503
MboII GAAGA 4 cut(s) 191, 295, 500, 552
MfeI CAATTG 3 cut(s) 138, 200, 368
MluCI AATT 8 cut(s) 79, 138, 200, 260, 368, 393, 632, 785
MmeI TCCRAC 2 cut(s) 322, 359
MnlI CCTC 7 cut(s) 27, 185, 399, 526, 730, 758, 768
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 301
MunI CAATTG 3 cut(s) 138, 200, 368
MvaI CCWGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 547
NdeII GATC 4 cut(s) 316, 389, 457, 503
NlaIII CATG 4 cut(s) 295, 614, 660, 737
NlaIV GGNNCC 2 cut(s) 117, 627
NmuCI GTSAC 2 cut(s) 218, 729
NspI RCATGY 2 cut(s) 614, 660
PaeI GCATGC 2 cut(s) 614, 660
PagI TCATGA 1 cut(s) 291
PfeI GAWTC 3 cut(s) 52, 165, 689
PflMI CCANNNNNTGG 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 299
PspEI GGTNACC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 117, 627
PspPI GGNCC 2 cut(s) 626, 662
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 2 cut(s) 117, 723
RsaNI GTAC 2 cut(s) 116, 722
Sau3AI GATC 4 cut(s) 316, 389, 457, 503
Sau96I GGNCC 2 cut(s) 626, 662
ScrFI CCNGG 1 cut(s) 301
SetI ASST 5 cut(s) 117, 247, 582, 667, 769
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 2 cut(s) 626, 662
SpeI ACTAGT 2 cut(s) 101, 131
SphI GCATGC 2 cut(s) 614, 660
Sse9I AATT 8 cut(s) 79, 138, 200, 260, 368, 393, 632, 785
SsiI CCGC 1 cut(s) 660
SspI AATATT 1 cut(s) 335
SspMI CTAG 4 cut(s) 102, 132, 225, 257
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 416
TaqI TCGA 2 cut(s) 177, 460
TaqII GACCGA 1 cut(s) 206
TasI AATT 8 cut(s) 79, 138, 200, 260, 368, 393, 632, 785
TfiI GAWTC 3 cut(s) 52, 165, 689
TscAI CASTG 1 cut(s) 407
TseFI GTSAC 2 cut(s) 218, 729
Tsp45I GTSAC 2 cut(s) 218, 729
TspDTI ATGAA 1 cut(s) 424
TspRI CASTG 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 626, 662
XapI RAATTY 2 cut(s) 260, 632
XceI RCATGY 2 cut(s) 614, 660
XmiI GTMKAC 2 cut(s) 538, 552
XspI CTAG 4 cut(s) 102, 132, 225, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.