pycom07g21940

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000321
Physical Location & Seq
Reverse (-)
23423046 .. 23424524
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21940.2

Sequence Viewer

Length: 1071 bp
ATGTGGTACAGTCCAATCATATTTCTGAGAAAGCTAGTTGCACAGCAAAGAAAGAAAAAAAATGAAACATCTACTGAGAAAGTGAAACAGGGTGATTTGGTGGAAATCATGTCTAAGAAGAGAGCAAAACATGACGATGTGCCGAAATTCATGTCTAAGAAGAGAGCGAAACAAAAGGTTAACAAGAATACTAAAACCATGGATAAGATTGAAGCTAAGAAGGTCAAGCAAACGGATATGCAGGAAATATTTGATTTGAACATCATGGAAAAGACGGACAAAATTGCAAATTCAAACGAAAAAGAAAGTGATATCAAGAACCATTTCAAGGTAAAGCAAAGTGACCAAGAGAACATATATGATGTGAACATCAACGATAAGACAAACAAAATTACAAATTCCATGGAAAAAATATCTGATATCAAGAAGGTACAACAGTGCAAGCTCGCTATAGACACTGCTAAGAACATTGTTGCATATGGAATTCCACTTGGGCCTAAGAACCTACGTGTTTCTATTGATTTAGCAATTAAAGAAGATGCTCTTCTTCCAATACCTAGTTGTGAAGCTGTGAATATCAAACAAGCAATTGGGAGTCACGTAGCTTGGCCACGACATCTTGTCGTGATAAATGATGAGTTGAGAACGAATCCACCCCTCAGGCAAAGATCCCAAAAACAACCTTTGGCTTTGCGTTCACTTATGCTCATAGCTCAAAACATGCATAAGGATGTTACTGTACCTATCATTATGGAATCTGACCTATTCGGAAATGGGCACACAACATTTATTGGTGGAGACGACATCATTCAATTTTGTTCCATGGCTGAAATATCGACTGTTTGCATTTCAATTTACATCAGGCAACTTTGGTCCACGTTGAAGAAGAACAATCTTGATGGAATGTTTGGATTTGTAGATCCTAGCAGAATTTCCCAAAAGGCTGGCAAAAAGGAACAAAGATCAAATGCACTGGCTCTTAGATTACAGAACTGCAAAAAAGGACAATTAATTTTTGCTCCGTATAACAAAGGGTTATTAGTACTATGTGTTTTGAACTTTTGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

357

Amino Acids

40.51

Weight (kDa)

9.63

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 663, 914
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 5 cut(s) 146, 289, 397, 483, 930
AfaI GTAC 4 cut(s) 8, 432, 741, 1044
AfiI CCNNNNNNNGG 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 8 cut(s) 212, 259, 294, 328, 812, 852, 883, 1057
AhdI GACNNNNNGTC 1 cut(s) 620
AloI GAACNNNNNNTCC 1 cut(s) 1049
AluBI AGCT 6 cut(s) 34, 215, 445, 569, 605, 713
AluI AGCT 6 cut(s) 34, 215, 445, 569, 605, 713
Alw26I GTCTC 1 cut(s) 792
AlwI GGATC 2 cut(s) 663, 914
AoxI GGCC 2 cut(s) 494, 608
ApoI RAATTY 5 cut(s) 146, 289, 397, 483, 930
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AseI ATTAAT 1 cut(s) 1010
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 494, 873
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 873
AxyI CCTNAGG 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 780
BaeI ACNNNNGTAYC 2 cut(s) 422, 455
BalI TGGCCA 1 cut(s) 610
BccI CCATC 1 cut(s) 893
BcoDI GTCTC 1 cut(s) 792
BfaI CTAG 3 cut(s) 35, 558, 924
BfmI CTRYAG 1 cut(s) 450
BmcAI AGTACT 1 cut(s) 1044
Bme18I GGWCC 1 cut(s) 873
BmeRI GACNNNNNGTC 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 494, 873
BmsI GCATC 1 cut(s) 529
BsaAI YACGTR 2 cut(s) 509, 601
BsaJI CCNNGG 3 cut(s) 198, 402, 822
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 978
Bse21I CCTNAGG 1 cut(s) 659
BseDI CCNNGG 3 cut(s) 198, 402, 822
BseGI GGATG 1 cut(s) 736
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 3 cut(s) 17, 66, 673
BseNI ACTGG 1 cut(s) 978
BseSI GKGCMC 1 cut(s) 780
BshFI GGCC 2 cut(s) 496, 610
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 792
BsmBI CGTCTC 1 cut(s) 792
BsnI GGCC 2 cut(s) 496, 610
Bsp1286I GDGCHC 1 cut(s) 780
Bsp143I GATC 3 cut(s) 668, 919, 962
Bsp19I CCATGG 3 cut(s) 198, 402, 822
BspANI GGCC 2 cut(s) 496, 610
BspCNI CTCAG 3 cut(s) 18, 67, 672
BspPI GGATC 2 cut(s) 663, 914
BspQI GCTCTTC 1 cut(s) 549
BsrI ACTGG 1 cut(s) 978
BssECI CCNNGG 3 cut(s) 198, 402, 822
BssMI GATC 3 cut(s) 668, 919, 962
BssT1I CCWWGG 3 cut(s) 198, 402, 822
Bst4CI ACNGT 4 cut(s) 11, 438, 739, 841
Bst6I CTCTTC 3 cut(s) 113, 155, 549
BstBAI YACGTR 2 cut(s) 509, 601
BstC8I GCNNGC 3 cut(s) 443, 447, 946
BstDEI CTNAG 9 cut(s) 26, 75, 114, 156, 216, 462, 498, 659, 980
BstDSI CCRYGG 3 cut(s) 198, 402, 822
BstF5I GGATG 1 cut(s) 736
BstKTI GATC 3 cut(s) 671, 922, 965
BstMAI GTCTC 1 cut(s) 792
BstMBI GATC 3 cut(s) 668, 919, 962
BstNSI RCATGY 1 cut(s) 724
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 780
BstX2I RGATCY 2 cut(s) 668, 919
BstXI CCANNNNNNTGG 1 cut(s) 944
BstYI RGATCY 2 cut(s) 668, 919
Bsu36I CCTNAGG 1 cut(s) 659
BsuRI GGCC 2 cut(s) 496, 610
BtgI CCRYGG 3 cut(s) 198, 402, 822
BtsCI GGATG 1 cut(s) 736
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 443, 456, 971
Cac8I GCNNGC 3 cut(s) 443, 447, 946
Cfr13I GGNCC 2 cut(s) 494, 873
Csp6I GTAC 4 cut(s) 7, 431, 740, 1043
CviAII CATG 8 cut(s) 109, 131, 151, 199, 265, 403, 721, 823
CviQI GTAC 4 cut(s) 7, 431, 740, 1043
DdeI CTNAG 9 cut(s) 26, 75, 114, 156, 216, 462, 498, 659, 980
DpnI GATC 3 cut(s) 670, 921, 964
DpnII GATC 3 cut(s) 668, 919, 962
DriI GACNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 608
Eam1104I CTCTTC 3 cut(s) 113, 155, 549
Eam1105I GACNNNNNGTC 1 cut(s) 620
EarI CTCTTC 3 cut(s) 113, 155, 549
Eco130I CCWWGG 3 cut(s) 198, 402, 822
Eco32I GATATC 2 cut(s) 313, 421
Eco47I GGWCC 1 cut(s) 873
Eco81I CCTNAGG 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 483
EcoRV GATATC 2 cut(s) 313, 421
EcoT14I CCWWGG 3 cut(s) 198, 402, 822
EcoT22I ATGCAT 1 cut(s) 726
ErhI CCWWGG 3 cut(s) 198, 402, 822
Esp3I CGTCTC 1 cut(s) 792
FaeI CATG 8 cut(s) 112, 134, 154, 202, 268, 406, 724, 826
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FatI CATG 8 cut(s) 108, 130, 150, 198, 264, 402, 720, 822
FauNDI CATATG 1 cut(s) 478
FokI GGATG 1 cut(s) 743
FspBI CTAG 3 cut(s) 35, 558, 924
HaeIII GGCC 2 cut(s) 496, 610
Hin1II CATG 8 cut(s) 112, 134, 154, 202, 268, 406, 724, 826
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 3 cut(s) 595, 649, 755
HpaI GTTAAC 1 cut(s) 181
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 4 cut(s) 181, 367, 698, 876
Hpy188I TCNGA 4 cut(s) 27, 418, 760, 770
Hpy188III TCNNGA 4 cut(s) 316, 424, 625, 896
Hpy8I GTNNAC 4 cut(s) 181, 367, 698, 876
HpyAV CCTTC 2 cut(s) 214, 421
HpyCH4III ACNGT 4 cut(s) 11, 438, 739, 841
HpyCH4IV ACGT 3 cut(s) 508, 600, 878
HpyCH4V TGCA 9 cut(s) 41, 241, 287, 441, 476, 724, 846, 971, 996
HpyF3I CTNAG 9 cut(s) 26, 75, 114, 156, 216, 462, 498, 659, 980
HpySE526I ACGT 3 cut(s) 508, 600, 878
Hsp92II CATG 8 cut(s) 112, 134, 154, 202, 268, 406, 724, 826
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 668, 919, 962
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 1 cut(s) 1024
LpnPI CCDG 6 cut(s) 74, 227, 646, 847, 930, 959
LweI GCATC 1 cut(s) 529
MaeI CTAG 3 cut(s) 35, 558, 924
MaeII ACGT 3 cut(s) 508, 600, 878
MaeIII GTNAC 3 cut(s) 341, 596, 733
MalI GATC 3 cut(s) 670, 921, 964
MboI GATC 3 cut(s) 668, 919, 962
MboII GAAGA 7 cut(s) 130, 172, 536, 539, 548, 895, 898
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 2 cut(s) 668, 919
MhlI GDGCHC 1 cut(s) 780
MlsI TGGCCA 1 cut(s) 610
MluNI TGGCCA 1 cut(s) 610
MlyI GAGTC 1 cut(s) 604
MnlI CCTC 1 cut(s) 668
Mox20I TGGCCA 1 cut(s) 610
Mph1103I ATGCAT 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 323
MscI TGGCCA 1 cut(s) 610
MseI TTAA 3 cut(s) 180, 531, 1010
MslI CAYNNNNRTG 2 cut(s) 135, 729
Msp20I TGGCCA 1 cut(s) 610
MunI CAATTG 1 cut(s) 588
NcoI CCATGG 3 cut(s) 198, 402, 822
NdeI CATATG 1 cut(s) 478
NdeII GATC 3 cut(s) 668, 919, 962
NlaIII CATG 8 cut(s) 112, 134, 154, 202, 268, 406, 724, 826
NmuCI GTSAC 2 cut(s) 341, 596
NsiI ATGCAT 1 cut(s) 726
NspI RCATGY 1 cut(s) 724
PciSI GCTCTTC 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 649, 755
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
Ppu21I YACGTR 2 cut(s) 509, 601
PshBI ATTAAT 1 cut(s) 1010
PspPI GGNCC 2 cut(s) 494, 873
PsuI RGATCY 2 cut(s) 668, 919
RsaI GTAC 4 cut(s) 8, 432, 741, 1044
RsaNI GTAC 4 cut(s) 7, 431, 740, 1043
RseI CAYNNNNRTG 2 cut(s) 135, 729
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 3 cut(s) 180, 531, 1010
Sau3AI GATC 3 cut(s) 668, 919, 962
Sau96I GGNCC 2 cut(s) 494, 873
ScaI AGTACT 1 cut(s) 1044
SchI GAGTC 1 cut(s) 604
SduI GDGCHC 1 cut(s) 780
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 1 cut(s) 873
SmiMI CAYNNNNRTG 2 cut(s) 135, 729
SspI AATATT 1 cut(s) 249
SspMI CTAG 3 cut(s) 35, 558, 924
StyI CCWWGG 3 cut(s) 198, 402, 822
TaaI ACNGT 4 cut(s) 11, 438, 739, 841
TaiI ACGT 3 cut(s) 511, 603, 881
TaqI TCGA 1 cut(s) 836
TatI WGTACW 1 cut(s) 1042
TfiI GAWTC 2 cut(s) 649, 755
Tru1I TTAA 3 cut(s) 180, 531, 1010
Tru9I TTAA 3 cut(s) 180, 531, 1010
TscAI CASTG 3 cut(s) 443, 463, 978
TseFI GTSAC 2 cut(s) 341, 596
Tsp45I GTSAC 2 cut(s) 341, 596
TspDTI ATGAA 2 cut(s) 78, 139
TspGWI ACGGA 3 cut(s) 248, 290, 1011
TspRI CASTG 3 cut(s) 443, 463, 978
VpaK11BI GGWCC 1 cut(s) 873
VspI ATTAAT 1 cut(s) 1010
XapI RAATTY 5 cut(s) 146, 289, 397, 483, 930
XceI RCATGY 1 cut(s) 724
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 3 cut(s) 35, 558, 924
ZrmI AGTACT 1 cut(s) 1044
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.