Rh1DG288000

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000321
Physical Location & Seq
Reverse (-)
51080979 .. 51081773
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG288000.1

Sequence Viewer

Length: 543 bp
ATGTCACATGAAGAGAACTCAATGAGCACTTGGAAGTCTTCAAGTAAAACACCATGCAGACAAGCAGCATACAAGATGCCTGTGTCTGTGCATCTTCTACTGCGTTTGGCAAGAACAATGGATGAATCTATAGCAGTGTCGGTCCCAATGGAAGAAGGTGTGTTTGGCAATGACCACAATACATTCATAAACAGTAACGACATCATCCAGTTTTGTTCGATGCAGCCAATATCCACTATTTGCATTTCTATCTACATGAGACACCTCTGGTCATTGTTGAAAATGAGGAATGAGGATCACTTGCATGTATTTGTGGATCCTGGCCGCATCTCTAATGAAGCTGGAAAGGTTGAGGCTAGATCATGTGCGCTATCACTAAGATTAGAATCTGCCAAATTAGATCAGTTAATTCTTGCTCCTTATAATACAGGGAATCATTGGTTATTGGCTGCCATTAACCCGTTTACTGCATTGGTGTATTACTTCGACCCATTGAGTAACATTAACATCAATCCAGGCATGAAGAACGTTATAGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

180

Amino Acids

20.34

Weight (kDa)

6.36

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AciI CCGC 1 cut(s) 325
AclI AACGTT 1 cut(s) 528
AclWI GGATC 3 cut(s) 303, 311, 324
AcoI YGGCCR 1 cut(s) 322
AgsI TTSAA 2 cut(s) 42, 280
AjnI CCWGG 2 cut(s) 319, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 2 cut(s) 341, 538
AluI AGCT 2 cut(s) 341, 538
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 3 cut(s) 303, 311, 324
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 65, 223, 449
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BamHI GGATCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 3 cut(s) 77, 235, 436
BciT130I CCWGG 2 cut(s) 321, 516
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 4 cut(s) 66, 224, 325, 450
BlsI GCNGC 4 cut(s) 67, 225, 326, 451
Bme1390I CCNGG 2 cut(s) 321, 516
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 144, 318
BmrFI CCNGG 2 cut(s) 321, 516
BmsI GCATC 4 cut(s) 66, 100, 210, 336
BpiI GAAGAC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 385
BseBI CCWGG 2 cut(s) 321, 516
BseGI GGATG 2 cut(s) 127, 204
BseJI GATNNNNATC 1 cut(s) 385
BseMI GCAATG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 208
BseXI GCAGC 3 cut(s) 77, 235, 436
BshFI GGCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 29
BslFI GGGAC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 295, 316, 359, 400
BspACI CCGC 1 cut(s) 325
BspANI GGCC 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 144, 318
BspPI GGATC 3 cut(s) 303, 311, 324
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 208
BssMI GATC 4 cut(s) 295, 316, 359, 400
Bst2UI CCWGG 2 cut(s) 321, 516
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 127, 204
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 4 cut(s) 298, 319, 362, 403
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 4 cut(s) 295, 316, 359, 400
BstNI CCWGG 2 cut(s) 321, 516
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 319, 514
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 77, 235, 436
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 2 cut(s) 127, 204
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 6 cut(s) 8, 54, 256, 305, 363, 520
CviJI RGCY 6 cut(s) 226, 324, 341, 356, 449, 538
CviKI_1 RGCY 6 cut(s) 226, 324, 341, 356, 449, 538
DdeI CTNAG 1 cut(s) 377
DpnI GATC 4 cut(s) 297, 318, 361, 402
DpnII GATC 4 cut(s) 295, 316, 359, 400
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 319, 514
FaeI CATG 6 cut(s) 11, 57, 259, 308, 366, 523
FaqI GGGAC 1 cut(s) 128
FatI CATG 6 cut(s) 7, 53, 255, 304, 362, 519
Fnu4HI GCNGC 4 cut(s) 66, 224, 325, 450
FokI GGATG 2 cut(s) 134, 191
Fsp4HI GCNGC 4 cut(s) 66, 224, 325, 450
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 369
GluI GCNGC 4 cut(s) 66, 224, 325, 450
HaeIII GGCC 1 cut(s) 324
HhaI GCGC 1 cut(s) 370
Hin1II CATG 6 cut(s) 11, 57, 259, 308, 366, 523
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HinfI GANTC 3 cut(s) 125, 386, 433
Hpy166II GTNNAC 1 cut(s) 465
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 6 cut(s) 57, 91, 223, 243, 304, 470
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 6 cut(s) 11, 57, 259, 308, 366, 523
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 4 cut(s) 295, 316, 359, 400
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 9 cut(s) 93, 221, 253, 306, 327, 333, 414, 501, 528
Lsp1109I GCAGC 3 cut(s) 77, 235, 436
LweI GCATC 4 cut(s) 66, 100, 210, 336
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 3, 194, 497
MalI GATC 4 cut(s) 297, 318, 361, 402
MboI GATC 4 cut(s) 295, 316, 359, 400
MboII GAAGA 5 cut(s) 23, 30, 86, 164, 535
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 2 cut(s) 395, 408
MnlI CCTC 4 cut(s) 275, 279, 286, 346
MseI TTAA 3 cut(s) 407, 456, 504
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 321, 516
MvaI CCWGG 2 cut(s) 321, 516
NdeII GATC 4 cut(s) 295, 316, 359, 400
NlaIII CATG 6 cut(s) 11, 57, 259, 308, 366, 523
NlaIV GGNNCC 2 cut(s) 144, 318
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 308
PfeI GAWTC 3 cut(s) 125, 386, 433
PkrI GCNGC 4 cut(s) 67, 225, 326, 451
PsiI TTATAA 1 cut(s) 423
Psp1406I AACGTT 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 319, 514
PspGI CCWGG 2 cut(s) 319, 514
PspN4I GGNNCC 2 cut(s) 144, 318
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 3 cut(s) 407, 456, 504
SatI GCNGC 4 cut(s) 66, 224, 325, 450
Sau3AI GATC 4 cut(s) 295, 316, 359, 400
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 321, 516
SduI GDGCHC 1 cut(s) 29
SetI ASST 6 cut(s) 160, 267, 343, 351, 531, 540
SfaNI GCATC 4 cut(s) 66, 100, 210, 336
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 2 cut(s) 395, 408
SsiI CCGC 1 cut(s) 325
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 319, 514
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 531
TaqI TCGA 2 cut(s) 218, 486
TaqII GACCGA 1 cut(s) 130
TasI AATT 2 cut(s) 395, 408
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 3 cut(s) 125, 386, 433
Tru1I TTAA 3 cut(s) 407, 456, 504
Tru9I TTAA 3 cut(s) 407, 456, 504
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 65, 223, 449
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 5 cut(s) 24, 138, 175, 351, 536
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.