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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1506 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 354 |
| AccI | GTMKAC | 1 cut(s) | 146 |
| AciI | CCGC | 4 cut(s) | 296, 753, 1063, 1768 |
| AcoI | YGGCCR | 1 cut(s) | 484 |
| AcsI | RAATTY | 2 cut(s) | 276, 500 |
| AcuI | CTGAAG | 2 cut(s) | 435, 1724 |
| AfaI | GTAC | 4 cut(s) | 217, 1428, 1872, 2025 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 63, 354, 931, 1182 |
| AflII | CTTAAG | 1 cut(s) | 1331 |
| AflIII | ACRYGT | 1 cut(s) | 1429 |
| AgsI | TTSAA | 8 cut(s) | 36, 239, 268, 367, 988, 1143, 1569, 1825 |
| AjiI | CACGTC | 1 cut(s) | 1312 |
| AjnI | CCWGG | 1 cut(s) | 1067 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1392, 1424 |
| AluBI | AGCT | 4 cut(s) | 243, 944, 1336, 1522 |
| AluI | AGCT | 4 cut(s) | 243, 944, 1336, 1522 |
| Alw21I | GWGCWC | 2 cut(s) | 771, 946 |
| Alw26I | GTCTC | 4 cut(s) | 35, 639, 905, 1245 |
| AoxI | GGCC | 5 cut(s) | 24, 245, 484, 1065, 1621 |
| ApeKI | GCWGC | 5 cut(s) | 469, 677, 1057, 1060, 1280 |
| ApoI | RAATTY | 2 cut(s) | 276, 500 |
| AseI | ATTAAT | 1 cut(s) | 1218 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1026 |
| AspS9I | GGNCC | 4 cut(s) | 1065, 1597, 1732, 1880 |
| AvaII | GGWCC | 3 cut(s) | 1597, 1732, 1880 |
| AxyI | CCTNAGG | 2 cut(s) | 249, 615 |
| BanI | GGYRCC | 1 cut(s) | 1506 |
| BanII | GRGCYC | 1 cut(s) | 946 |
| BauI | CACGAG | 1 cut(s) | 1608 |
| BbsI | GAAGAC | 3 cut(s) | 444, 1713, 1991 |
| Bbv12I | GWGCWC | 2 cut(s) | 771, 946 |
| BbvI | GCAGC | 5 cut(s) | 481, 664, 1069, 1072, 1292 |
| BccI | CCATC | 7 cut(s) | 236, 348, 623, 1265, 1364, 1703, 1900 |
| BceAI | ACGGC | 1 cut(s) | 471 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1575, 1609 |
| BciT130I | CCWGG | 1 cut(s) | 1069 |
| BcoDI | GTCTC | 4 cut(s) | 35, 639, 905, 1245 |
| BfmI | CTRYAG | 1 cut(s) | 1278 |
| BfrI | CTTAAG | 1 cut(s) | 1331 |
| BisI | GCNGC | 6 cut(s) | 297, 470, 678, 1058, 1061, 1281 |
| BlsI | GCNGC | 6 cut(s) | 298, 471, 679, 1059, 1062, 1282 |
| BmcAI | AGTACT | 1 cut(s) | 1872 |
| Bme1390I | CCNGG | 1 cut(s) | 1069 |
| Bme18I | GGWCC | 3 cut(s) | 1597, 1732, 1880 |
| BmgBI | CACGTC | 1 cut(s) | 1312 |
| BmgT120I | GGNCC | 4 cut(s) | 1065, 1597, 1732, 1880 |
| BmiI | GGNNCC | 3 cut(s) | 1508, 1662, 1734 |
| BmrFI | CCNGG | 1 cut(s) | 1069 |
| BmsI | GCATC | 5 cut(s) | 106, 188, 353, 859, 1581 |
| BpiI | GAAGAC | 3 cut(s) | 444, 1713, 1991 |
| BpmI | CTGGAG | 2 cut(s) | 930, 1131 |
| BpuEI | CTTGAG | 2 cut(s) | 43, 1275 |
| BsaAI | YACGTR | 2 cut(s) | 215, 656 |
| BsaI | GGTCTC | 1 cut(s) | 639 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1762, 1792, 1895, 1925 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 63, 354, 931, 1182 |
| Bse118I | RCCGGY | 1 cut(s) | 1623 |
| Bse1I | ACTGG | 2 cut(s) | 127, 1148 |
| Bse21I | CCTNAGG | 2 cut(s) | 249, 615 |
| BseBI | CCWGG | 1 cut(s) | 1069 |
| BseGI | GGATG | 8 cut(s) | 344, 625, 832, 850, 1039, 1375, 1692, 1827 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 63, 354, 931, 1182 |
| BseMII | CTCAG | 8 cut(s) | 606, 756, 810, 837, 1022, 1080, 1491, 1590 |
| BseNI | ACTGG | 2 cut(s) | 127, 1148 |
| BseRI | GAGGAG | 1 cut(s) | 895 |
| BseXI | GCAGC | 5 cut(s) | 481, 664, 1069, 1072, 1292 |
| BshFI | GGCC | 5 cut(s) | 26, 247, 486, 1067, 1623 |
| BshNI | GGYRCC | 1 cut(s) | 1506 |
| BsiHKAI | GWGCWC | 2 cut(s) | 771, 946 |
| BsiSI | CCGG | 1 cut(s) | 1624 |
| BslFI | GGGAC | 2 cut(s) | 209, 1312 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 63, 354, 931, 1182 |
| BsmAI | GTCTC | 4 cut(s) | 35, 639, 905, 1245 |
| BsmFI | GGGAC | 2 cut(s) | 209, 1312 |
| BsmI | GAATGC | 2 cut(s) | 755, 823 |
| BsnI | GGCC | 5 cut(s) | 26, 247, 486, 1067, 1623 |
| Bso31I | GGTCTC | 1 cut(s) | 639 |
| Bsp1286I | GDGCHC | 2 cut(s) | 771, 946 |
| Bsp1407I | TGTACA | 1 cut(s) | 1426 |
| Bsp143I | GATC | 1 cut(s) | 1104 |
| BspACI | CCGC | 4 cut(s) | 296, 753, 1063, 1768 |
| BspANI | GGCC | 5 cut(s) | 26, 247, 486, 1067, 1623 |
| BspCNI | CTCAG | 8 cut(s) | 607, 757, 811, 838, 1021, 1081, 1490, 1589 |
| BspLI | GGNNCC | 3 cut(s) | 1508, 1662, 1734 |
| BspMAI | CTGCAG | 1 cut(s) | 1282 |
| BspT107I | GGYRCC | 1 cut(s) | 1506 |
| BspTI | CTTAAG | 1 cut(s) | 1331 |
| BspTNI | GGTCTC | 1 cut(s) | 639 |
| BsrFI | RCCGGY | 1 cut(s) | 1623 |
| BsrGI | TGTACA | 1 cut(s) | 1426 |
| BsrI | ACTGG | 2 cut(s) | 127, 1148 |
| BssAI | RCCGGY | 1 cut(s) | 1623 |
| BssMI | GATC | 1 cut(s) | 1104 |
| BssNAI | GTATAC | 1 cut(s) | 147 |
| BssSI | CACGAG | 1 cut(s) | 1608 |
| Bst1107I | GTATAC | 1 cut(s) | 147 |
| Bst2BI | CACGAG | 1 cut(s) | 1608 |
| Bst2UI | CCWGG | 1 cut(s) | 1069 |
| Bst4CI | ACNGT | 7 cut(s) | 223, 717, 780, 1160, 1426, 1821, 2028 |
| Bst6I | CTCTTC | 2 cut(s) | 1743, 1767 |
| BstAFI | CTTAAG | 1 cut(s) | 1331 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 743, 1085, 1358 |
| BstAUI | TGTACA | 1 cut(s) | 1426 |
| BstBAI | YACGTR | 2 cut(s) | 215, 656 |
| BstC8I | GCNNGC | 7 cut(s) | 245, 675, 1065, 1359, 1588, 1621, 1775 |
| BstF5I | GGATG | 8 cut(s) | 344, 625, 832, 850, 1039, 1375, 1692, 1827 |
| BstKTI | GATC | 1 cut(s) | 1107 |
| BstMAI | GTCTC | 4 cut(s) | 35, 639, 905, 1245 |
| BstMBI | GATC | 1 cut(s) | 1104 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 743, 941, 1085, 1358, 1363, 1774 |
| BstNI | CCWGG | 1 cut(s) | 1069 |
| BstNSI | RCATGY | 5 cut(s) | 737, 791, 809, 1488, 1777 |
| BstSCI | CCNGG | 1 cut(s) | 1067 |
| BstSFI | CTRYAG | 1 cut(s) | 1278 |
| BstV1I | GCAGC | 5 cut(s) | 481, 664, 1069, 1072, 1292 |
| BstV2I | GAAGAC | 3 cut(s) | 444, 1713, 1991 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1863 |
| BstZ17I | GTATAC | 1 cut(s) | 147 |
| Bsu36I | CCTNAGG | 2 cut(s) | 249, 615 |
| BsuRI | GGCC | 5 cut(s) | 26, 247, 486, 1067, 1623 |
| BtgZI | GCGATG | 1 cut(s) | 83 |
| BtrI | CACGTC | 1 cut(s) | 1312 |
| BtsCI | GGATG | 8 cut(s) | 344, 625, 832, 850, 1039, 1375, 1692, 1827 |
| BtsIMutI | CAGTG | 3 cut(s) | 238, 1708, 2056 |
| Cac8I | GCNNGC | 7 cut(s) | 245, 675, 1065, 1359, 1588, 1621, 1775 |
| Cfr10I | RCCGGY | 1 cut(s) | 1623 |
| Cfr13I | GGNCC | 4 cut(s) | 1065, 1597, 1732, 1880 |
| Csp6I | GTAC | 4 cut(s) | 216, 1427, 1871, 2024 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1249, 1284 |
| CviQI | GTAC | 4 cut(s) | 216, 1427, 1871, 2024 |
| DpnI | GATC | 1 cut(s) | 1106 |
| DpnII | GATC | 1 cut(s) | 1104 |
| DraI | TTTAAA | 1 cut(s) | 403 |
| EaeI | YGGCCR | 1 cut(s) | 484 |
| Eam1104I | CTCTTC | 2 cut(s) | 1743, 1767 |
| EarI | CTCTTC | 2 cut(s) | 1743, 1767 |
| EciI | GGCGGA | 1 cut(s) | 1783 |
| Ecl136II | GAGCTC | 1 cut(s) | 944 |
| Eco147I | AGGCCT | 1 cut(s) | 26 |
| Eco24I | GRGCYC | 1 cut(s) | 946 |
| Eco31I | GGTCTC | 1 cut(s) | 639 |
| Eco32I | GATATC | 1 cut(s) | 2044 |
| Eco47I | GGWCC | 3 cut(s) | 1597, 1732, 1880 |
| Eco53kI | GAGCTC | 1 cut(s) | 944 |
| Eco57I | CTGAAG | 2 cut(s) | 435, 1724 |
| Eco81I | CCTNAGG | 2 cut(s) | 249, 615 |
| EcoICRI | GAGCTC | 1 cut(s) | 944 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1880 |
| EcoRII | CCWGG | 1 cut(s) | 1067 |
| EcoRV | GATATC | 1 cut(s) | 2044 |
| EcoT22I | ATGCAT | 2 cut(s) | 99, 1490 |
| EcoT38I | GRGCYC | 1 cut(s) | 946 |
| FaqI | GGGAC | 2 cut(s) | 209, 1312 |
| FauI | CCCGC | 1 cut(s) | 1056 |
| FauNDI | CATATG | 2 cut(s) | 166, 2058 |
| FblI | GTMKAC | 1 cut(s) | 146 |
| Fnu4HI | GCNGC | 6 cut(s) | 297, 470, 678, 1058, 1061, 1281 |
| FokI | GGATG | 8 cut(s) | 331, 632, 819, 837, 1046, 1382, 1699, 1814 |
| FriOI | GRGCYC | 1 cut(s) | 946 |
| Fsp4HI | GCNGC | 6 cut(s) | 297, 470, 678, 1058, 1061, 1281 |
| GluI | GCNGC | 6 cut(s) | 297, 470, 678, 1058, 1061, 1281 |
| GsuI | CTGGAG | 2 cut(s) | 930, 1131 |
| HaeIII | GGCC | 5 cut(s) | 26, 247, 486, 1067, 1623 |
| HapII | CCGG | 1 cut(s) | 1624 |
| HincII | GTYRAC | 2 cut(s) | 336, 1692 |
| HindII | GTYRAC | 2 cut(s) | 336, 1692 |
| HinfI | GANTC | 6 cut(s) | 284, 596, 953, 1592, 1757, 1845 |
| HpaII | CCGG | 1 cut(s) | 1624 |
| Hpy166II | GTNNAC | 9 cut(s) | 8, 147, 336, 1315, 1429, 1498, 1692, 1804, 2037 |
| Hpy8I | GTNNAC | 9 cut(s) | 8, 147, 336, 1315, 1429, 1498, 1692, 1804, 2037 |
| HpyAV | CCTTC | 5 cut(s) | 166, 807, 1162, 1462, 1575 |
| HpyCH4III | ACNGT | 7 cut(s) | 223, 717, 780, 1160, 1426, 1821, 2028 |
| HpyCH4IV | ACGT | 7 cut(s) | 79, 214, 655, 1267, 1311, 1431, 1988 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 743, 941, 1085, 1358, 1363, 1774 |
| HpySE526I | ACGT | 7 cut(s) | 79, 214, 655, 1267, 1311, 1431, 1988 |
| Kzo9I | GATC | 1 cut(s) | 1104 |
| LmnI | GCTCC | 4 cut(s) | 941, 949, 1341, 1770 |
| Lsp1109I | GCAGC | 5 cut(s) | 481, 664, 1069, 1072, 1292 |
| LweI | GCATC | 5 cut(s) | 106, 188, 353, 859, 1581 |
| MaeII | ACGT | 7 cut(s) | 79, 214, 655, 1267, 1311, 1431, 1988 |
| MaeIII | GTNAC | 3 cut(s) | 371, 1626, 2051 |
| MalI | GATC | 1 cut(s) | 1106 |
| MboI | GATC | 1 cut(s) | 1104 |
| MhlI | GDGCHC | 2 cut(s) | 771, 946 |
| MlyI | GAGTC | 2 cut(s) | 1751, 1854 |
| Mph1103I | ATGCAT | 2 cut(s) | 99, 1490 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1026 |
| MseI | TTAA | 8 cut(s) | 69, 402, 422, 453, 491, 1218, 1332, 1991 |
| MslI | CAYNNNNRTG | 4 cut(s) | 203, 891, 1512, 1861 |
| MspA1I | CMGCKG | 1 cut(s) | 1063 |
| MspCI | CTTAAG | 1 cut(s) | 1331 |
| MspI | CCGG | 1 cut(s) | 1624 |
| MspR9I | CCNGG | 1 cut(s) | 1069 |
| Mva1269I | GAATGC | 2 cut(s) | 755, 823 |
| MvaI | CCWGG | 1 cut(s) | 1069 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 743, 941, 1085, 1358, 1363, 1774 |
| NdeI | CATATG | 2 cut(s) | 166, 2058 |
| NdeII | GATC | 1 cut(s) | 1104 |
| NlaIV | GGNNCC | 3 cut(s) | 1508, 1662, 1734 |
| NmuCI | GTSAC | 2 cut(s) | 371, 2051 |
| NsiI | ATGCAT | 2 cut(s) | 99, 1490 |
| NspI | RCATGY | 5 cut(s) | 737, 791, 809, 1488, 1777 |
| PaeI | GCATGC | 1 cut(s) | 1777 |
| PceI | AGGCCT | 1 cut(s) | 26 |
| PctI | GAATGC | 2 cut(s) | 755, 823 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1026 |
| PfeI | GAWTC | 4 cut(s) | 284, 596, 953, 1592 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 354 |
| PkrI | GCNGC | 6 cut(s) | 298, 471, 679, 1059, 1062, 1282 |
| PleI | GAGTC | 2 cut(s) | 1751, 1853 |
| PpsI | GAGTC | 2 cut(s) | 1751, 1853 |
| Ppu21I | YACGTR | 2 cut(s) | 215, 656 |
| PpuMI | RGGWCCY | 1 cut(s) | 1880 |
| PshBI | ATTAAT | 1 cut(s) | 1218 |
| Psp124BI | GAGCTC | 1 cut(s) | 946 |
| Psp5II | RGGWCCY | 1 cut(s) | 1880 |
| Psp6I | CCWGG | 1 cut(s) | 1067 |
| PspGI | CCWGG | 1 cut(s) | 1067 |
| PspN4I | GGNNCC | 3 cut(s) | 1508, 1662, 1734 |
| PspPI | GGNCC | 4 cut(s) | 1065, 1597, 1732, 1880 |
| PspPPI | RGGWCCY | 1 cut(s) | 1880 |
| PstI | CTGCAG | 1 cut(s) | 1282 |
| RsaI | GTAC | 4 cut(s) | 217, 1428, 1872, 2025 |
| RsaNI | GTAC | 4 cut(s) | 216, 1427, 1871, 2024 |
| RseI | CAYNNNNRTG | 4 cut(s) | 203, 891, 1512, 1861 |
| SacI | GAGCTC | 1 cut(s) | 946 |
| SaqAI | TTAA | 8 cut(s) | 69, 402, 422, 453, 491, 1218, 1332, 1991 |
| SatI | GCNGC | 6 cut(s) | 297, 470, 678, 1058, 1061, 1281 |
| Sau3AI | GATC | 1 cut(s) | 1104 |
| Sau96I | GGNCC | 4 cut(s) | 1065, 1597, 1732, 1880 |
| ScaI | AGTACT | 1 cut(s) | 1872 |
| SchI | GAGTC | 2 cut(s) | 1751, 1854 |
| ScrFI | CCNGG | 1 cut(s) | 1069 |
| SduI | GDGCHC | 2 cut(s) | 771, 946 |
| SfaNI | GCATC | 5 cut(s) | 106, 188, 353, 859, 1581 |
| SfcI | CTRYAG | 1 cut(s) | 1278 |
| SinI | GGWCC | 3 cut(s) | 1597, 1732, 1880 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 203, 891, 1512, 1861 |
| SmlI | CTYRAG | 3 cut(s) | 58, 1290, 1331 |
| SmoI | CTYRAG | 3 cut(s) | 58, 1290, 1331 |
| SphI | GCATGC | 1 cut(s) | 1777 |
| SseBI | AGGCCT | 1 cut(s) | 26 |
| SsiI | CCGC | 4 cut(s) | 296, 753, 1063, 1768 |
| SstI | GAGCTC | 1 cut(s) | 946 |
| StuI | AGGCCT | 1 cut(s) | 26 |
| StyD4I | CCNGG | 1 cut(s) | 1067 |
| TaaI | ACNGT | 7 cut(s) | 223, 717, 780, 1160, 1426, 1821, 2028 |
| TaiI | ACGT | 7 cut(s) | 82, 217, 658, 1270, 1314, 1434, 1991 |
| TaqI | TCGA | 1 cut(s) | 1895 |
| TaqII | GACCGA | 1 cut(s) | 2024 |
| TatI | WGTACW | 2 cut(s) | 1426, 1870 |
| TauI | GCSGC | 1 cut(s) | 299 |
| TfiI | GAWTC | 4 cut(s) | 284, 596, 953, 1592 |
| Tru1I | TTAA | 8 cut(s) | 69, 402, 422, 453, 491, 1218, 1332, 1991 |
| Tru9I | TTAA | 8 cut(s) | 69, 402, 422, 453, 491, 1218, 1332, 1991 |
| TscAI | CASTG | 3 cut(s) | 238, 1708, 2056 |
| TseFI | GTSAC | 2 cut(s) | 371, 2051 |
| TseI | GCWGC | 5 cut(s) | 469, 677, 1057, 1060, 1280 |
| Tsp45I | GTSAC | 2 cut(s) | 371, 2051 |
| TspGWI | ACGGA | 1 cut(s) | 277 |
| TspRI | CASTG | 3 cut(s) | 238, 1708, 2056 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 354 |
| Vha464I | CTTAAG | 1 cut(s) | 1331 |
| VpaK11BI | GGWCC | 3 cut(s) | 1597, 1732, 1880 |
| VspI | ATTAAT | 1 cut(s) | 1218 |
| XapI | RAATTY | 2 cut(s) | 276, 500 |
| XceI | RCATGY | 5 cut(s) | 737, 791, 809, 1488, 1777 |
| XmiI | GTMKAC | 1 cut(s) | 146 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1026 |
| ZrmI | AGTACT | 1 cut(s) | 1872 |
| Zsp2I | ATGCAT | 2 cut(s) | 99, 1490 |