RchiOBHm_Chr7g0232611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000321
Physical Location & Seq
Forward (+)
56709872 .. 56710366
495 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20850

Sequence Viewer

Length: 420 bp
ATGTTTGCTTCATTATTGGATCCCGAGAAGTTGGATCCAGTTAAACTAGGCATGATTCGAGACATGTTCAGATGTAATAATGGATCTGAAAAAGCTAGTTGCTCAGTCGACAAGGAGAAAAATCTGTCTTCTAAGGAGGAAGTATCTAAGGTGGCATATGAGAAAGAAAAAGAGAAAAAAGCTACTGCCAAAAAGGTTCGAAAATGGGATGATACTCCATCTCCAATTGACAACAGTAGAGAGAGCAAGAAGGCAAAACAATTGTATAAAGGGGGACTAATGATGAGACAGAGAGGAGCATTGGAAGATGACAATGTGATAACATCAACAGATAAAGCATATATTCCTATTGAAACAACAAATGTTGTAAAAAAGGTATGTAACTTTGTGACATGTGCATTCTTCTGCTTGTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.83

Weight (kDa)

9.02

Isoelectric Point (pI)

24.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AclWI GGATC 5 cut(s) 14, 27, 29, 42, 91
AflIII ACRYGT 2 cut(s) 63, 392
AgsI TTSAA 1 cut(s) 353
AluBI AGCT 2 cut(s) 95, 182
AluI AGCT 2 cut(s) 95, 182
Alw26I GTCTC 2 cut(s) 54, 280
AlwI GGATC 5 cut(s) 14, 27, 29, 42, 91
Ama87I CYCGRG 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 23
BamHI GGATCC 2 cut(s) 19, 34
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 54, 280
BfaI CTAG 2 cut(s) 47, 96
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 21, 36
BpiI GAAGAC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bse1I ACTGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 288
BsmAI GTCTC 2 cut(s) 54, 280
BsmFI GGGAC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 199
Bsp143I GATC 3 cut(s) 19, 34, 83
BspCNI CTCAG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 21, 36
BspPI GGATC 5 cut(s) 14, 27, 29, 42, 91
BspT104I TTCGAA 1 cut(s) 199
BsrI ACTGG 1 cut(s) 38
BssMI GATC 3 cut(s) 19, 34, 83
Bst4CI ACNGT 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 199
BstDEI CTNAG 3 cut(s) 103, 132, 147
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 3 cut(s) 22, 37, 86
BstMAI GTCTC 2 cut(s) 54, 280
BstMBI GATC 3 cut(s) 19, 34, 83
BstNSI RCATGY 2 cut(s) 67, 396
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 3 cut(s) 19, 34, 83
BstYI RGATCY 3 cut(s) 19, 34, 83
BtsCI GGATG 1 cut(s) 214
CviAII CATG 3 cut(s) 52, 64, 393
CviJI RGCY 2 cut(s) 95, 182
CviKI_1 RGCY 2 cut(s) 95, 182
DdeI CTNAG 3 cut(s) 103, 132, 147
DpnI GATC 3 cut(s) 21, 36, 85
DpnII GATC 3 cut(s) 19, 34, 83
Eco88I CYCGRG 1 cut(s) 23
FaeI CATG 3 cut(s) 55, 67, 396
FaiI YATR 9 cut(s) 53, 65, 157, 159, 267, 340, 342, 379, 394
FaqI GGGAC 1 cut(s) 288
FatI CATG 3 cut(s) 51, 63, 392
FauNDI CATATG 1 cut(s) 157
FblI GTMKAC 1 cut(s) 108
FokI GGATG 1 cut(s) 221
FspBI CTAG 2 cut(s) 47, 96
Hin1II CATG 3 cut(s) 55, 67, 396
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 71, 88
Hpy188III TCNNGA 2 cut(s) 23, 59
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 398
HpyF3I CTNAG 3 cut(s) 103, 132, 147
Hsp92II CATG 3 cut(s) 55, 67, 396
Kzo9I GATC 3 cut(s) 19, 34, 83
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 1 cut(s) 51
MaeI CTAG 2 cut(s) 47, 96
MaeIII GTNAC 2 cut(s) 380, 388
MalI GATC 3 cut(s) 21, 36, 85
MboI GATC 3 cut(s) 19, 34, 83
MboII GAAGA 3 cut(s) 120, 317, 394
MfeI CAATTG 2 cut(s) 225, 260
MflI RGATCY 3 cut(s) 19, 34, 83
MluCI AATT 2 cut(s) 225, 260
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 2 cut(s) 130, 287
MseI TTAA 2 cut(s) 42, 418
MunI CAATTG 2 cut(s) 225, 260
Mva1269I GAATGC 1 cut(s) 398
NdeI CATATG 1 cut(s) 157
NdeII GATC 3 cut(s) 19, 34, 83
NlaIII CATG 3 cut(s) 55, 67, 396
NlaIV GGNNCC 2 cut(s) 21, 36
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 2 cut(s) 67, 396
NspV TTCGAA 1 cut(s) 199
PciI ACATGT 2 cut(s) 63, 392
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 1 cut(s) 55
PscI ACATGT 2 cut(s) 63, 392
PspN4I GGNNCC 2 cut(s) 21, 36
PsuI RGATCY 3 cut(s) 19, 34, 83
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 42, 418
Sau3AI GATC 3 cut(s) 19, 34, 83
SetI ASST 5 cut(s) 97, 153, 184, 198, 378
SfuI TTCGAA 1 cut(s) 199
Sse9I AATT 2 cut(s) 225, 260
SspMI CTAG 2 cut(s) 47, 96
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 58, 108, 199
TasI AATT 2 cut(s) 225, 260
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 42, 418
Tru9I TTAA 2 cut(s) 42, 418
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
XceI RCATGY 2 cut(s) 67, 396
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 2 cut(s) 47, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.