Rh6BG171500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000321
Physical Location & Seq
Forward (+)
28346723 .. 28347424
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG171500.1

Sequence Viewer

Length: 504 bp
ATGGACAAGGAGAAAAATGAGTCTTCTAAGGAGGAGGTATCTAGGATGGCATCCAAGAAAGAATTTGAGAATAAAGTTGCTGCAAAAAAGGTTCAAAAAATGGATGACATTCCATCTTCAATTGACAACAGTAGGGAGATCAAGAAGGCAAAACAACAATACAATGAGGAAATAATTAACTCGAATGCTGAATTGGAATATGACAATCTGATAACTTCAGCAGAGACAACATACATTCCTATTGAAAAGAATACAGTGACAGCAAAATTTGCAAAAAAGGAAACAAAATGCAAACTAGTAGTAGACACCAAACAGAATATTGTTGCAATGAGAACTGTCATAATGTTGAATGAGTCAATACATGGAGTGCCCCTAGGAGCAGAAAATGTACGTATCTCAGTTGAAGTGTCTATCAAGGAAGATGTTTATCTCTCAATCCCAAATGTGTCAGGTGACATATTTACAGTAAAGCACGCTATAGATACTCATGTTGCTTGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

167

Amino Acids

18.84

Weight (kDa)

5.99

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 91 - 167 1.5e-11 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 62, 266
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 390
AgsI TTSAA 5 cut(s) 95, 120, 245, 349, 404
AhlI ACTAGT 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
Alw26I GTCTC 1 cut(s) 218
AoxI GGCC 1 cut(s) 497
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 62, 266
AspA2I CCTAGG 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 464
AvrII CCTAGG 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 372
BaeI ACNNNNGTAYC 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 40, 121
BcoDI GTCTC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 295
BfaI CTAG 3 cut(s) 42, 296, 374
BfmI CTRYAG 1 cut(s) 477
BisI GCNGC 1 cut(s) 81
BlnI CCTAGG 1 cut(s) 373
BlsI GCNGC 1 cut(s) 82
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 3 cut(s) 50, 51, 109
BseJI GATNNNNATC 1 cut(s) 426
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 499
BsmAI GTCTC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 138
BspANI GGCC 1 cut(s) 499
BspCNI CTCAG 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 373
Bst4CI ACNGT 4 cut(s) 131, 256, 337, 466
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 2 cut(s) 27, 397
BstF5I GGATG 3 cut(s) 50, 51, 109
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 372
BstSNI TACGTA 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 499
BtsCI GGATG 3 cut(s) 50, 51, 109
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 474
Csp6I GTAC 1 cut(s) 389
CviAII CATG 2 cut(s) 362, 488
CviJI RGCY 1 cut(s) 499
CviKI_1 RGCY 1 cut(s) 499
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 27, 397
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco105I TACGTA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 2 cut(s) 365, 491
FaiI YATR 7 cut(s) 201, 232, 341, 363, 458, 479, 489
FatI CATG 2 cut(s) 361, 487
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 37, 58, 116
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 3 cut(s) 42, 296, 374
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 499
Hin1II CATG 2 cut(s) 365, 491
HinfI GANTC 2 cut(s) 20, 353
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 4 cut(s) 131, 256, 337, 466
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 4 cut(s) 83, 272, 291, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 27, 397
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 2 cut(s) 365, 491
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 377
LpnPI CCDG 1 cut(s) 435
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 59
MaeI CTAG 3 cut(s) 42, 296, 374
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 2 cut(s) 256, 452
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 15, 108, 431
MfeI CAATTG 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 5 cut(s) 62, 120, 174, 191, 266
MlyI GAGTC 2 cut(s) 29, 362
MnlI CCTC 3 cut(s) 25, 28, 160
MseI TTAA 1 cut(s) 177
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 1 cut(s) 138
NlaIII CATG 2 cut(s) 365, 491
NmuCI GTSAC 2 cut(s) 256, 452
PctI GAATGC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 28, 361
PpsI GAGTC 2 cut(s) 28, 361
Ppu21I YACGTR 1 cut(s) 392
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 138
SchI GAGTC 2 cut(s) 29, 362
SduI GDGCHC 1 cut(s) 372
SetI ASST 4 cut(s) 39, 93, 394, 454
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 477
SnaBI TACGTA 1 cut(s) 392
SpeI ACTAGT 1 cut(s) 295
Sse9I AATT 5 cut(s) 62, 120, 174, 191, 266
SspI AATATT 1 cut(s) 319
SspMI CTAG 3 cut(s) 42, 296, 374
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 4 cut(s) 131, 256, 337, 466
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 182
TasI AATT 5 cut(s) 62, 120, 174, 191, 266
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 2 cut(s) 256, 452
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 256, 452
TspRI CASTG 1 cut(s) 261
XapI RAATTY 2 cut(s) 62, 266
XmaJI CCTAGG 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 3 cut(s) 42, 296, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.