Rh6CG135700

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000321
Physical Location & Seq
Reverse (-)
17219925 .. 17220968
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG135700.1

Sequence Viewer

Length: 531 bp
ATGGATCCAGAAGAAGAAAATCATGCTTCTGAAGATTACTTGTCATCTGATGAGAAGAAGGGAAGAGGTCCAACTCTGATGTCCGACATTATTCATGGCAGGAGTAAGGGGGCTCAAATGGAAGTGACATATAACAAAAAGGGGCAACCAATTGGTCTTGGAGGGAAGAGGCTAGCTACTTTTATTGGGGTAATGGCTCGAACTACTATCCCAATCACATATGAGACTTGGCCAGCCGTGAAGAAATCACTTAAAGAAGTGATATGGAGTATGGTTCAGGAAATTCATGAGGACCACTCAAGGAGACGAGCTTTTCATGAGTATGAGCATCGAATGTCCAGGAAAGGCTATGCTAATTTGGAAGAGGAACTAAAACTGGAGTTAGGGACTGAAGAAGATATTGACAGAGCTATCTTATGGAAGAAAGGGCGTGTCGATAAAGAGGGTAACTATTTGAGTGAGACAACCAAACAACGTGCCGAGAAGATTGTGAGTTCAGATGTATCGAACCTTAATCACCTTAAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

176

Amino Acids

20.28

Weight (kDa)

6.67

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 2 cut(s) 51, 411
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 3 cut(s) 176, 311, 410
AluI AGCT 3 cut(s) 176, 311, 410
Alw26I GTCTC 3 cut(s) 218, 298, 455
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 68, 292
AsuHPI GGTGA 1 cut(s) 509
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 2 cut(s) 68, 292
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 218, 298, 455
BfaI CTAG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 2 cut(s) 68, 292
BmgT120I GGNCC 2 cut(s) 68, 292
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 337
BmtI GCTAGC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 381
BshFI GGCC 1 cut(s) 232
BslFI GGGAC 1 cut(s) 400
BsmAI GTCTC 3 cut(s) 218, 298, 455
BsmBI CGTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 232
BspHI TCATGA 2 cut(s) 286, 316
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 381
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 340
Bst6I CTCTTC 3 cut(s) 58, 161, 357
BstC8I GCNNGC 2 cut(s) 174, 234
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 3 cut(s) 218, 298, 455
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 174, 234
CciI TCATGA 2 cut(s) 286, 316
Cfr13I GGNCC 2 cut(s) 68, 292
CviAII CATG 4 cut(s) 23, 95, 287, 317
CviJI RGCY 9 cut(s) 113, 172, 176, 197, 232, 236, 311, 348, 410
CviKI_1 RGCY 9 cut(s) 113, 172, 176, 197, 232, 236, 311, 348, 410
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 3 cut(s) 58, 161, 357
EarI CTCTTC 3 cut(s) 58, 161, 357
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 68, 292
Eco57I CTGAAG 2 cut(s) 51, 411
EcoRII CCWGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 4 cut(s) 26, 98, 290, 320
FaqI GGGAC 1 cut(s) 400
FatI CATG 4 cut(s) 22, 94, 286, 316
FauNDI CATATG 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 4 cut(s) 26, 98, 290, 320
HphI GGTGA 1 cut(s) 509
Hpy188I TCNGA 5 cut(s) 31, 49, 78, 85, 499
Hpy188III TCNNGA 4 cut(s) 8, 278, 287, 317
HpyAV CCTTC 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 475
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 4 cut(s) 26, 98, 290, 320
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 21, 85, 246, 263, 325, 352, 362
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 124, 446
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 3 cut(s) 150, 282, 355
MluNI TGGCCA 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 95, 108
MnlI CCTC 6 cut(s) 59, 155, 162, 283, 358, 436
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
MseI TTAA 3 cut(s) 252, 513, 522
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 340
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 4 cut(s) 26, 98, 290, 320
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 124
PagI TCATGA 2 cut(s) 286, 316
PfoI TCCNGGA 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 68, 292
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 3 cut(s) 252, 513, 522
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 2 cut(s) 68, 292
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 1 cut(s) 115
SetI ASST 7 cut(s) 70, 178, 313, 412, 478, 513, 522
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 2 cut(s) 68, 292
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 3 cut(s) 150, 282, 355
SspI AATATT 1 cut(s) 527
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 338
TaiI ACGT 1 cut(s) 478
TaqI TCGA 4 cut(s) 199, 331, 435, 506
TasI AATT 3 cut(s) 150, 282, 355
Tru1I TTAA 3 cut(s) 252, 513, 522
Tru9I TTAA 3 cut(s) 252, 513, 522
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 83, 275, 305
VpaK11BI GGWCC 2 cut(s) 68, 292
XapI RAATTY 1 cut(s) 282
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.