Rh5DG472700

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000321
Physical Location & Seq
Forward (+)
74735977 .. 74736374
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG472700.1

Sequence Viewer

Length: 300 bp
ATGGAGTATGGTTCAGAAATCATTCATTGTGGATCCAAGAAGCAAGAAAGATGTCTTGAGCAGTGCAGGAAGGAAATGGAAATCATTCAAGAGCACTTTAACTACAAAATATATATATTAAAGTATAAAGATCGACGGGGCCTCCTAAAGAAAAAACCTAAAGAATATGAGTTCATCACTCAACCTCAGTGGGAAGCTTTCATGAAATCTCGATTAACTCCTGAATTTTTGGTAGGCCACATCTTTTGTTTAACATTAGCTTTAGGTGTCCTCTTTCTATTACTTAATGTTTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

99

Amino Acids

11.95

Weight (kDa)

8.9

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 27, 40
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 2 cut(s) 197, 260
AluI AGCT 2 cut(s) 197, 260
Alw21I GWGCWC 1 cut(s) 96
AlwI GGATC 2 cut(s) 27, 40
AoxI GGCC 2 cut(s) 139, 235
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 2 cut(s) 21, 84
AspS9I GGNCC 1 cut(s) 139
BamHI GGATCC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 34, 140
BpuEI CTTGAG 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
BseMII CTCAG 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 2 cut(s) 141, 237
BsiHKAI GWGCWC 1 cut(s) 96
BsnI GGCC 2 cut(s) 141, 237
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 32, 130
BspANI GGCC 2 cut(s) 141, 237
BspCNI CTCAG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 34, 140
BspPI GGATC 2 cut(s) 27, 40
BssMI GATC 2 cut(s) 32, 130
BstDEI CTNAG 1 cut(s) 186
BstKTI GATC 2 cut(s) 35, 133
BstMBI GATC 2 cut(s) 32, 130
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 2 cut(s) 141, 237
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 68, 194
CciI TCATGA 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 295
CspCI CAANNNNNGTGG 4 cut(s) 170, 205, 227, 262
CviAII CATG 1 cut(s) 202
CviJI RGCY 4 cut(s) 141, 197, 237, 260
CviKI_1 RGCY 4 cut(s) 141, 197, 237, 260
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 34, 132
DpnII GATC 2 cut(s) 32, 130
EcoO109I RGGNCCY 1 cut(s) 139
FaeI CATG 1 cut(s) 205
FaiI YATR 7 cut(s) 9, 112, 114, 116, 126, 168, 203
FatI CATG 1 cut(s) 201
HaeIII GGCC 2 cut(s) 141, 237
Hin1II CATG 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 5 cut(s) 56, 89, 202, 210, 221
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 2 cut(s) 32, 130
LpnPI CCDG 2 cut(s) 52, 234
MalI GATC 2 cut(s) 34, 132
MboI GATC 2 cut(s) 32, 130
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 224
MnlI CCTC 3 cut(s) 152, 195, 281
MroXI GAANNNNTTC 2 cut(s) 21, 84
MseI TTAA 5 cut(s) 99, 119, 215, 251, 285
NdeII GATC 2 cut(s) 32, 130
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 2 cut(s) 34, 140
PagI TCATGA 1 cut(s) 201
PdmI GAANNNNTTC 2 cut(s) 21, 84
PspN4I GGNNCC 2 cut(s) 34, 140
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 5 cut(s) 99, 119, 215, 251, 285
Sau3AI GATC 2 cut(s) 32, 130
Sau96I GGNCC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 160, 187, 199, 262, 268
SgeI CNNG 9 cut(s) 49, 56, 68, 79, 101, 149, 214, 222, 233
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 224
TaqI TCGA 2 cut(s) 133, 211
TasI AATT 1 cut(s) 224
TatI WGTACW 1 cut(s) 294
Tru1I TTAA 5 cut(s) 99, 119, 215, 251, 285
Tru9I TTAA 5 cut(s) 99, 119, 215, 251, 285
TscAI CASTG 2 cut(s) 68, 194
TspDTI ATGAA 4 cut(s) 14, 163, 190, 218
TspRI CASTG 2 cut(s) 68, 194
XapI RAATTY 1 cut(s) 224
XmnI GAANNNNTTC 2 cut(s) 21, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.