pycom07g27440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000321
Physical Location & Seq
Forward (+)
27179609 .. 27181203
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27440.3

Sequence Viewer

Length: 372 bp
ATGTTTTGCATTGCAATTGAATTCCCTACGGAAGACTCACTGTCTTTCTATCTCTCCCTCTATTTCTCTCTCTCTCGGACGCCCACAATCTTCATCTTCATCGCGAGTACTCACTGTCTTTCTATCTCTCCCTCTATTTCTCTCTCTCTGGGACGCCCACAGTCTTCATCAACCAGATTGATTGTTTTCCCCAAATTTCACTCAAAACCTAATTGTGTATGGTTTCATTGGTTGTTGGATATTATTGACCCCTACGAGGAATTAGTGTATTATATGGACTCACTTAATTGGATACAGATAGATCCTGGAATGAAGGACATTGTTGAACTATCACTGAAGATGTTTAAAGCTCAAAAGGGAATAAAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.19

Weight (kDa)

6.25

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 104
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 2 cut(s) 20, 194
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 2 cut(s) 80, 154
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 2 cut(s) 20, 326
AhdI GACNNNNNGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 1 cut(s) 350
AluI AGCT 1 cut(s) 350
AlwI GGATC 1 cut(s) 296
ApoI RAATTY 2 cut(s) 20, 194
BbsI GAAGAC 2 cut(s) 39, 156
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 285
BfuI GTATCC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 306
BmeRI GACNNNNNGTC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 39, 156
BsaHI GRCGYC 2 cut(s) 80, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 301
Bsp68I TCGCGA 1 cut(s) 104
BspFNI CGCG 1 cut(s) 104
BspPI GGATC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 9
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 2 cut(s) 80, 154
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 42, 116, 162
BstACI GRCGYC 2 cut(s) 80, 154
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 1 cut(s) 104
BstV2I GAAGAC 2 cut(s) 39, 156
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuI GTATCC 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 85
BtsIMutI CAGTG 3 cut(s) 38, 112, 332
BtuMI TCGCGA 1 cut(s) 104
CseI GACGC 2 cut(s) 88, 162
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 1 cut(s) 350
CviKI_1 RGCY 1 cut(s) 350
CviQI GTAC 1 cut(s) 108
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
DraI TTTAAA 1 cut(s) 346
DriI GACNNNNNGTC 1 cut(s) 40
Eam1105I GACNNNNNGTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 304
FaiI YATR 3 cut(s) 220, 273, 275
FaqI GGGAC 1 cut(s) 165
HgaI GACGC 2 cut(s) 88, 162
Hin1I GRCGYC 2 cut(s) 80, 154
HinfI GANTC 2 cut(s) 35, 278
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 3 cut(s) 42, 116, 162
HpyCH4V TGCA 2 cut(s) 9, 14
Hsp92I GRCGYC 2 cut(s) 80, 154
Kzo9I GATC 1 cut(s) 301
LpnPI CCDG 4 cut(s) 134, 187, 291, 318
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 5 cut(s) 44, 82, 88, 156, 349
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 301
MluCI AATT 6 cut(s) 15, 20, 194, 211, 260, 286
MlyI GAGTC 2 cut(s) 29, 272
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 3 cut(s) 68, 142, 250
MseI TTAA 2 cut(s) 285, 345
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 104
NdeII GATC 1 cut(s) 301
NruI TCGCGA 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 304
PleI GAGTC 2 cut(s) 29, 272
PpsI GAGTC 2 cut(s) 29, 272
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 301
RruI TCGCGA 1 cut(s) 104
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 285, 345
Sau3AI GATC 1 cut(s) 301
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 2 cut(s) 29, 272
ScrFI CCNGG 1 cut(s) 306
SetI ASST 2 cut(s) 211, 352
SgeI CNNG 8 cut(s) 87, 115, 117, 161, 186, 268, 317, 318
Sse9I AATT 6 cut(s) 15, 20, 194, 211, 260, 286
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 3 cut(s) 42, 116, 162
TasI AATT 6 cut(s) 15, 20, 194, 211, 260, 286
TatI WGTACW 1 cut(s) 107
Tru1I TTAA 2 cut(s) 285, 345
Tru9I TTAA 2 cut(s) 285, 345
TscAI CASTG 3 cut(s) 45, 119, 339
TspDTI ATGAA 5 cut(s) 82, 88, 156, 215, 326
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 3 cut(s) 45, 119, 339
XapI RAATTY 2 cut(s) 20, 194
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.