Rroxscaffold_7G00196240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000321
Physical Location & Seq
Forward (+)
38938866 .. 38940320
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196240.1

Sequence Viewer

Length: 573 bp
ATGTTGGAACAGCAGTTGGAATTGATGCAAAACCGGATGAACTTGTTTGCTTCATTATTGGATCCAGCTAAACTAAGCATGATGCGAGACATTTTCAGATCTAGTAATGGATCTGAAAAAGCTAGCTGCTCAGTCGACAAGGAGAAAAATCAGTCTTCTAAGGAGAAGGTATCTAATGTGGCATCCAAGAAAGAAATTGAGAAAAAAACTACTGCAAAAAAGGCTCTAAAAGTGGATGATATTCCCTCTCGGATTGACGGTAGTAGAGAGAGCAATAAGAACTCAATGAGCACTCACAAGTCTTCGAGTAAAATACCATGCAAACAAGCAGCATACAAGATGCCGGTGTTTGTGCATCTTCTACTGCATTTGGCAAGAACAACAGATGAATCTATAGCAGTGTCGGTCCCAATGGAAGAGGGTGTATTTGGCAATGACCACAACACATTTATAAACAGTAATGACATCATCCAATTTTGTTTGATGCAGCCAATATCCACAATCTGCATTTCTATCTACATGAGGTTAGAGAGATTTACATGTTTAATGAATACTTGGCATGCTAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.54

Weight (kDa)

9.08

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
AccI GTMKAC 1 cut(s) 135
AclWI GGATC 3 cut(s) 56, 69, 118
AflIII ACRYGT 1 cut(s) 539
AluBI AGCT 3 cut(s) 68, 122, 126
AluI AGCT 3 cut(s) 68, 122, 126
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 3 cut(s) 56, 69, 118
ApeKI GCWGC 3 cut(s) 126, 329, 487
AspS9I GGNCC 1 cut(s) 406
AsuNHI GCTAGC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 406
BamHI GGATCC 1 cut(s) 61
BbsI GAAGAC 2 cut(s) 147, 294
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 113, 341, 499
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 102, 123
BfmI CTRYAG 1 cut(s) 393
BglII AGATCT 1 cut(s) 98
BisI GCNGC 3 cut(s) 127, 330, 488
BlsI GCNGC 3 cut(s) 128, 331, 489
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 63, 408
BmsI GCATC 6 cut(s) 15, 72, 191, 330, 364, 474
BmtI GCTAGC 1 cut(s) 126
BpiI GAAGAC 2 cut(s) 147, 294
BsaWI WCCGGW 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 439
BseGI GGATG 4 cut(s) 42, 182, 241, 468
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 3 cut(s) 113, 341, 499
BsiHKAI GWGCWC 1 cut(s) 293
BsiSI CCGG 2 cut(s) 34, 344
BslFI GGGAC 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 61, 98, 110
BspCNI CTCAG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 63, 408
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 3 cut(s) 56, 69, 118
BsrDI GCAATG 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 3 cut(s) 61, 98, 110
Bst4CI ACNGT 2 cut(s) 260, 458
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 124, 561
BstDEI CTNAG 4 cut(s) 74, 130, 159, 564
BstF5I GGATG 4 cut(s) 42, 182, 241, 468
BstKTI GATC 3 cut(s) 64, 101, 113
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 61, 98, 110
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNSI RCATGY 2 cut(s) 543, 563
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 3 cut(s) 113, 341, 499
BstV2I GAAGAC 2 cut(s) 147, 294
BstX2I RGATCY 3 cut(s) 61, 98, 110
BstYI RGATCY 3 cut(s) 61, 98, 110
BtsCI GGATG 4 cut(s) 42, 182, 241, 468
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 124, 561
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 406
CviAII CATG 5 cut(s) 79, 318, 520, 540, 560
CviJI RGCY 5 cut(s) 68, 122, 126, 224, 490
CviKI_1 RGCY 5 cut(s) 68, 122, 126, 224, 490
DdeI CTNAG 4 cut(s) 74, 130, 159, 564
DpnI GATC 3 cut(s) 63, 100, 112
DpnII GATC 3 cut(s) 61, 98, 110
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 406
FaeI CATG 5 cut(s) 82, 321, 523, 543, 563
FaiI YATR 8 cut(s) 80, 319, 334, 395, 452, 521, 541, 561
FaqI GGGAC 1 cut(s) 392
FatI CATG 5 cut(s) 78, 317, 519, 539, 559
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 127, 330, 488
FokI GGATG 4 cut(s) 49, 169, 248, 455
Fsp4HI GCNGC 3 cut(s) 127, 330, 488
FspBI CTAG 2 cut(s) 102, 123
GluI GCNGC 3 cut(s) 127, 330, 488
HapII CCGG 2 cut(s) 34, 344
Hin1II CATG 5 cut(s) 82, 321, 523, 543, 563
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 389
HpaII CCGG 2 cut(s) 34, 344
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 98, 115, 252
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 260, 458
HpyCH4V TGCA 7 cut(s) 28, 215, 321, 355, 367, 487, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 4 cut(s) 74, 130, 159, 564
Hsp92II CATG 5 cut(s) 82, 321, 523, 543, 563
Kzo9I GATC 3 cut(s) 61, 98, 110
LpnPI CCDG 3 cut(s) 47, 78, 357
Lsp1109I GCAGC 3 cut(s) 113, 341, 499
LweI GCATC 6 cut(s) 15, 72, 191, 330, 364, 474
MaeI CTAG 2 cut(s) 102, 123
MalI GATC 3 cut(s) 63, 100, 112
MboI GATC 3 cut(s) 61, 98, 110
MboII GAAGA 4 cut(s) 147, 294, 350, 428
MflI RGATCY 3 cut(s) 61, 98, 110
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 3 cut(s) 20, 195, 473
MnlI CCTC 3 cut(s) 256, 412, 516
MseI TTAA 1 cut(s) 545
MspI CCGG 2 cut(s) 34, 344
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 3 cut(s) 61, 98, 110
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 5 cut(s) 82, 321, 523, 543, 563
NlaIV GGNNCC 2 cut(s) 63, 408
NspI RCATGY 2 cut(s) 543, 563
PaeI GCATGC 1 cut(s) 563
PciI ACATGT 1 cut(s) 539
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 3 cut(s) 128, 331, 489
PscI ACATGT 1 cut(s) 539
PsiI TTATAA 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 63, 408
PspPI GGNCC 1 cut(s) 406
PsuI RGATCY 3 cut(s) 61, 98, 110
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 3 cut(s) 127, 330, 488
Sau3AI GATC 3 cut(s) 61, 98, 110
Sau96I GGNCC 1 cut(s) 406
SduI GDGCHC 1 cut(s) 293
SetI ASST 5 cut(s) 70, 124, 128, 171, 527
SfaNI GCATC 6 cut(s) 15, 72, 191, 330, 364, 474
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 406
SphI GCATGC 1 cut(s) 563
Sse9I AATT 3 cut(s) 20, 195, 473
SspMI CTAG 2 cut(s) 102, 123
TaaI ACNGT 2 cut(s) 260, 458
TaqI TCGA 2 cut(s) 135, 305
TaqII GACCGA 1 cut(s) 394
TasI AATT 3 cut(s) 20, 195, 473
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 1 cut(s) 405
TseI GCWGC 3 cut(s) 126, 329, 487
TspDTI ATGAA 4 cut(s) 42, 53, 402, 563
TspRI CASTG 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 406
XceI RCATGY 2 cut(s) 543, 563
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 102, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.