Rh3BG126600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000321
Physical Location & Seq
Reverse (-)
10473414 .. 10473848
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG126600.1

Sequence Viewer

Length: 435 bp
ATGGCTTTGGAAAAGCCTGAATATTCCGGTCGTGTAAGTGGTGTTGGAAGCAATGTCACACCTATTTTGTACTTCAATACTCCAAGGTGTCGATCTCAATCCACCCAAAATCAGTTGCTGCAACAAATGGAGCAAATGCAGAACCAGCTTTTAATGTTTACTCAACTGCTACAACCTGATCAATTGTTAATGATGCAACACATGGTCCAAGGTAGCCGTGTGTCTGACAAATCTAGTTGCTCAGTTCAGAAAGACAAATACGAGACATTATCTAAGGAGGAGGTGTCTAGGGTGGAAATGATGAAAGGAATTGAGAAGAAATCTAAGAAAGCTACATTTAACGTCAATGAACAAGAGGCTTTGAAGAGTAGTACTAAAATTCCAGAAGAAATCAAGAAGGTATGCTACTTTTGTAAATTTCATTTATTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.67

Weight (kDa)

8.87

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 378, 416
AfaI GTAC 2 cut(s) 71, 373
AgsI TTSAA 3 cut(s) 76, 364, 431
AluBI AGCT 2 cut(s) 148, 332
AluI AGCT 2 cut(s) 148, 332
Alw26I GTCTC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 2 cut(s) 378, 416
AspS9I GGNCC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 205
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
BbvI GCAGC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 201
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 234, 288
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmcAI AGTACT 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmsI GCATC 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 83, 208
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 83, 208
BseJI GATNNNNATC 1 cut(s) 97
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 257
Bsp143I GATC 2 cut(s) 92, 178
BspCNI CTCAG 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 83, 208
BssMI GATC 2 cut(s) 92, 178
BssT1I CCWWGG 2 cut(s) 83, 208
Bst6I CTCTTC 1 cut(s) 359
BstDEI CTNAG 3 cut(s) 241, 273, 324
BstKTI GATC 2 cut(s) 95, 181
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 92, 178
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 70, 372
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 5, 16, 148, 216, 332, 359
CviKI_1 RGCY 6 cut(s) 5, 16, 148, 216, 332, 359
CviQI GTAC 2 cut(s) 70, 372
DdeI CTNAG 3 cut(s) 241, 273, 324
DpnI GATC 2 cut(s) 94, 180
DpnII GATC 2 cut(s) 92, 178
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco130I CCWWGG 2 cut(s) 83, 208
Eco47I GGWCC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 83, 208
ErhI CCWWGG 2 cut(s) 83, 208
FaeI CATG 1 cut(s) 205
FaiI YATR 2 cut(s) 203, 403
FatI CATG 1 cut(s) 201
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 2 cut(s) 234, 288
GluI GCNGC 1 cut(s) 119
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 205
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 226, 249
Hpy188III TCNNGA 2 cut(s) 383, 394
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 121, 139, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 3 cut(s) 241, 273, 324
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 2 cut(s) 92, 178
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 30, 40, 158, 189, 396
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 183
MaeI CTAG 2 cut(s) 234, 288
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 94, 180
MboI GATC 2 cut(s) 92, 178
MboII GAAGA 3 cut(s) 328, 376, 398
MfeI CAATTG 1 cut(s) 182
MluCI AATT 4 cut(s) 182, 309, 378, 416
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 3 cut(s) 271, 274, 349
MseI TTAA 3 cut(s) 152, 188, 339
MspI CCGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 145
NdeII GATC 2 cut(s) 92, 178
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 118
RsaI GTAC 2 cut(s) 71, 373
RsaNI GTAC 2 cut(s) 70, 372
SaqAI TTAA 3 cut(s) 152, 188, 339
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 92, 178
Sau96I GGNCC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 373
SetI ASST 9 cut(s) 64, 89, 150, 178, 214, 285, 334, 345, 402
SfaNI GCATC 1 cut(s) 183
SinI GGWCC 1 cut(s) 205
Sse9I AATT 4 cut(s) 182, 309, 378, 416
SspI AATATT 1 cut(s) 23
SspMI CTAG 2 cut(s) 234, 288
StyI CCWWGG 2 cut(s) 83, 208
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 91
TasI AATT 4 cut(s) 182, 309, 378, 416
TatI WGTACW 2 cut(s) 69, 371
Tru1I TTAA 3 cut(s) 152, 188, 339
Tru9I TTAA 3 cut(s) 152, 188, 339
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 317, 363, 410
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 2 cut(s) 378, 416
XspI CTAG 2 cut(s) 234, 288
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.