Rmu_sc0004003.1_g000007

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004003.1
OG0000321
Physical Location & Seq
Reverse (-)
36363 .. 37794
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004003.1_g000007.1.cds

Sequence Viewer

Length: 720 bp
atggattcagaagaagaaaatcatgctactgaagatgacttgccatatgatgagaagaaggcaagaggttcaactctcatgtccgacattattcatggtaggagtaagggggcttggatggaagttacttataataaaaaagggcaaccaattggtcttggagggaagagactagcaacttttattggggtaatggctcaaactactatcccaattacatatgagacttggccaaccatgaagaattcacttaaagaaatgatatggagtatggttcaagaaacccatgaggaccactcaaggagacgagctttgcatgagtatgatcatcgaatgtctaggaaaggctatgctaatttggaggaggaactagtaagcacatttctggatgctttaacgaaagatgtaagagagggaattgtgtccgctgttggtagaaatgacattttgactcaagctttggagacacctgagcaactaggccgtgtaagaggtgctggacaatttgttacacacaaggtgtactttaacacatctagatataagcttgcaaccaagatacaaatgttggaactacagttggaattgatgcaaaaccagatcaacatgtttgcttcattattggatcctaagaagttggatccagctatactaagcatggtgagagacatgtttagatctaataacggatttgaaaaagctagctgctcagtctactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

239

Amino Acids

27.33

Weight (kDa)

6.4

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccI GTMKAC 1 cut(s) 714
AciI CCGC 1 cut(s) 426
AclWI GGATC 4 cut(s) 620, 633, 635, 648
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 520
AfaI GTAC 1 cut(s) 524
AflIII ACRYGT 2 cut(s) 606, 669
AgsI TTSAA 3 cut(s) 72, 278, 695
AhlI ACTAGT 1 cut(s) 370
AluBI AGCT 6 cut(s) 311, 458, 547, 647, 701, 705
AluI AGCT 6 cut(s) 311, 458, 547, 647, 701, 705
Alw26I GTCTC 5 cut(s) 163, 218, 298, 458, 660
AlwI GGATC 4 cut(s) 620, 633, 635, 648
AoxI GGCC 2 cut(s) 230, 481
ApeKI GCWGC 1 cut(s) 705
ApoI RAATTY 1 cut(s) 244
ArsI GACNNNNNNTTYG 2 cut(s) 442, 474
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 673
AsuNHI GCTAGC 1 cut(s) 701
AvaII GGWCC 1 cut(s) 292
BaeI ACNNNNGTAYC 2 cut(s) 551, 584
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 2 cut(s) 625, 640
BbvI GCAGC 1 cut(s) 692
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 468
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 5 cut(s) 163, 218, 298, 458, 660
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 7 cut(s) 173, 339, 371, 479, 537, 702, 718
BfmI CTRYAG 1 cut(s) 575
BglII AGATCT 1 cut(s) 677
BisI GCNGC 1 cut(s) 706
BlsI GCNGC 1 cut(s) 707
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 627, 642
BmsI GCATC 2 cut(s) 379, 579
BmtI GCTAGC 1 cut(s) 705
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 2 cut(s) 283, 438
BseGI GGATG 2 cut(s) 123, 394
BseMII CTCAG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 692
BshFI GGCC 2 cut(s) 232, 483
BsmAI GTCTC 5 cut(s) 163, 218, 298, 458, 660
BsmBI CGTCTC 1 cut(s) 298
BsnI GGCC 2 cut(s) 232, 483
Bsp143I GATC 5 cut(s) 325, 600, 625, 640, 677
BspACI CCGC 1 cut(s) 426
BspANI GGCC 2 cut(s) 232, 483
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 627, 642
BspOI GCTAGC 1 cut(s) 705
BspPI GGATC 4 cut(s) 620, 633, 635, 648
BssMI GATC 5 cut(s) 325, 600, 625, 640, 677
Bst4CI ACNGT 1 cut(s) 579
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 549, 703
BstDEI CTNAG 4 cut(s) 471, 630, 653, 709
BstF5I GGATG 2 cut(s) 123, 394
BstKTI GATC 5 cut(s) 328, 603, 628, 643, 680
BstMAI GTCTC 5 cut(s) 163, 218, 298, 458, 660
BstMBI GATC 5 cut(s) 325, 600, 625, 640, 677
BstNSI RCATGY 2 cut(s) 610, 673
BstSFI CTRYAG 1 cut(s) 575
BstV1I GCAGC 1 cut(s) 692
BstX2I RGATCY 3 cut(s) 625, 640, 677
BstYI RGATCY 3 cut(s) 625, 640, 677
BsuRI GGCC 2 cut(s) 232, 483
BtsCI GGATG 2 cut(s) 123, 394
Cac8I GCNNGC 2 cut(s) 549, 703
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 523
CviAII CATG 9 cut(s) 23, 79, 95, 238, 287, 317, 607, 658, 670
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 4 cut(s) 471, 630, 653, 709
DpnI GATC 5 cut(s) 327, 602, 627, 642, 679
DpnII GATC 5 cut(s) 325, 600, 625, 640, 677
DraIII CACNNNGTG 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 9 cut(s) 26, 82, 98, 241, 290, 320, 610, 661, 673
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FatI CATG 9 cut(s) 22, 78, 94, 237, 286, 316, 606, 657, 669
FauNDI CATATG 2 cut(s) 46, 220
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 1 cut(s) 706
FokI GGATG 2 cut(s) 130, 401
Fsp4HI GCNGC 1 cut(s) 706
FspBI CTAG 7 cut(s) 173, 339, 371, 479, 537, 702, 718
GluI GCNGC 1 cut(s) 706
HaeIII GGCC 2 cut(s) 232, 483
Hin1II CATG 9 cut(s) 26, 82, 98, 241, 290, 320, 610, 661, 673
HindIII AAGCTT 2 cut(s) 456, 545
HinfI GANTC 2 cut(s) 5, 451
HphI GGTGA 1 cut(s) 673
Hpy166II GTNNAC 2 cut(s) 523, 715
Hpy188I TCNGA 2 cut(s) 10, 85
Hpy188III TCNNGA 3 cut(s) 278, 386, 537
Hpy8I GTNNAC 2 cut(s) 523, 715
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 579
HpyCH4V TGCA 3 cut(s) 316, 551, 592
HpyF3I CTNAG 4 cut(s) 471, 630, 653, 709
Hsp92II CATG 9 cut(s) 26, 82, 98, 241, 290, 320, 610, 661, 673
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 5 cut(s) 325, 600, 625, 640, 677
LpnPI CCDG 5 cut(s) 371, 483, 483, 611, 657
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 2 cut(s) 379, 579
MaeI CTAG 7 cut(s) 173, 339, 371, 479, 537, 702, 718
MaeIII GTNAC 2 cut(s) 124, 508
MalI GATC 5 cut(s) 327, 602, 627, 642, 679
MboI GATC 5 cut(s) 325, 600, 625, 640, 677
MboII GAAGA 6 cut(s) 23, 26, 44, 67, 178, 253
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 3 cut(s) 625, 640, 677
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 7 cut(s) 150, 213, 244, 355, 417, 503, 584
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 4 cut(s) 108, 549, 561, 618
MnlI CCTC 7 cut(s) 59, 155, 283, 355, 358, 406, 485
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
MseI TTAA 3 cut(s) 252, 395, 528
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 428
MunI CAATTG 1 cut(s) 150
NdeI CATATG 2 cut(s) 46, 220
NdeII GATC 5 cut(s) 325, 600, 625, 640, 677
NheI GCTAGC 1 cut(s) 701
NlaIII CATG 9 cut(s) 26, 82, 98, 241, 290, 320, 610, 661, 673
NlaIV GGNNCC 2 cut(s) 627, 642
NspI RCATGY 2 cut(s) 610, 673
PciI ACATGT 2 cut(s) 606, 669
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 707
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PscI ACATGT 2 cut(s) 606, 669
PsiI TTATAA 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 627, 642
PspPI GGNCC 1 cut(s) 292
PsuI RGATCY 3 cut(s) 625, 640, 677
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 3 cut(s) 252, 395, 528
SatI GCNGC 1 cut(s) 706
Sau3AI GATC 5 cut(s) 325, 600, 625, 640, 677
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 445
SfaNI GCATC 2 cut(s) 379, 579
SfcI CTRYAG 1 cut(s) 575
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 298, 453
SmoI CTYRAG 2 cut(s) 298, 453
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 7 cut(s) 150, 213, 244, 355, 417, 503, 584
SsiI CCGC 1 cut(s) 426
SspMI CTAG 7 cut(s) 173, 339, 371, 479, 537, 702, 718
TaaI ACNGT 1 cut(s) 579
TaqI TCGA 1 cut(s) 331
TasI AATT 7 cut(s) 150, 213, 244, 355, 417, 503, 584
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 3 cut(s) 252, 395, 528
Tru9I TTAA 3 cut(s) 252, 395, 528
TseI GCWGC 1 cut(s) 705
TspDTI ATGAA 3 cut(s) 83, 254, 606
TspGWI ACGGA 1 cut(s) 702
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 244
XbaI TCTAGA 1 cut(s) 536
XceI RCATGY 2 cut(s) 610, 673
XmiI GTMKAC 1 cut(s) 714
XspI CTAG 7 cut(s) 173, 339, 371, 479, 537, 702, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.