Rmu_sc0002986.1_g000026

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002986.1
OG0000321
Physical Location & Seq
Reverse (-)
126569 .. 127552
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002986.1_g000026.1.cds

Sequence Viewer

Length: 732 bp
atgggaactgtaataatgttggatgggctgatacatggagtgcccctaggagcagaaaatatacgtatctcaattgatgtgcccatcaaggaagatgctaatctccccatcccaaatgagtcagctgaaatttttacagtaaagcaagctaccggtactcatgtcgcttggcctcgacatcttgttttaatgtcacatgaagagaactcaatgggcacttggaagttttcgagtaaaacaccacgcaaacaagcagcatacaagatgcctgtgtccgtgcatcttctactgcgtttggcaagaacaatggatgaatctatagcagcgtcggtcccaatggaagaaggtgtgtttggcaatgaccacaatacattcataaacggtaacgacatcatccagttttgttcgatgcagccaatatccactatttgcatttctatctacatgagacacctctggtcattgttgaaaatgaggaatgaggatcacttgtatgcatttgtggatcctggccgcatctctaatgaagctggaaaagttgaggctagatcatgtgcgctatcactgagattagaatctgccaaattagatcagttaattcttgctccttataatacagggaatcattggttattggctgctattaacccgtttactgcattggtgtattacttcgacccattgggtaacattaatatcaatccaggcatgaagaacattatagagctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

243

Amino Acids

27.11

Weight (kDa)

6.13

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AciI CCGC 1 cut(s) 514
AclWI GGATC 3 cut(s) 492, 500, 513
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 1 cut(s) 129
AfaI GTAC 1 cut(s) 157
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 1 cut(s) 469
AjnI CCWGG 2 cut(s) 508, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 4 cut(s) 125, 149, 530, 727
AluI AGCT 4 cut(s) 125, 149, 530, 727
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 3 cut(s) 492, 500, 513
AoxI GGCC 2 cut(s) 170, 511
ApeKI GCWGC 4 cut(s) 254, 323, 412, 638
ApoI RAATTY 1 cut(s) 129
AseI ATTAAT 1 cut(s) 693
AsiGI ACCGGT 1 cut(s) 152
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 1 cut(s) 331
AvaII GGWCC 1 cut(s) 331
AvrII CCTAGG 1 cut(s) 46
BaeGI GKGCMC 3 cut(s) 45, 84, 218
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BamHI GGATCC 1 cut(s) 505
BbvI GCAGC 4 cut(s) 266, 335, 424, 625
BccI CCATC 3 cut(s) 17, 92, 116
BciT130I CCWGG 2 cut(s) 510, 705
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 2 cut(s) 47, 546
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 5 cut(s) 255, 324, 413, 514, 639
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 5 cut(s) 256, 325, 414, 515, 640
Bme1390I CCNGG 2 cut(s) 510, 705
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 333, 507
BmrFI CCNGG 2 cut(s) 510, 705
BmsI GCATC 5 cut(s) 85, 255, 289, 399, 525
BsaAI YACGTR 1 cut(s) 65
BsaBI GATNNNNATC 2 cut(s) 99, 574
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 364
Bse8I GATNNNNATC 2 cut(s) 99, 574
BseBI CCWGG 2 cut(s) 510, 705
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 4 cut(s) 28, 108, 316, 393
BseJI GATNNNNATC 2 cut(s) 99, 574
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 397
BseSI GKGCMC 3 cut(s) 45, 84, 218
BseXI GCAGC 4 cut(s) 266, 335, 424, 625
BshFI GGCC 2 cut(s) 172, 513
BshTI ACCGGT 1 cut(s) 152
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 2 cut(s) 172, 513
Bsp1286I GDGCHC 3 cut(s) 45, 84, 218
Bsp143I GATC 4 cut(s) 484, 505, 548, 589
BspACI CCGC 1 cut(s) 514
BspANI GGCC 2 cut(s) 172, 513
BspCNI CTCAG 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 333, 507
BspPI GGATC 3 cut(s) 492, 500, 513
BsrDI GCAATG 1 cut(s) 364
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 4 cut(s) 484, 505, 548, 589
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 510, 705
Bst4CI ACNGT 3 cut(s) 10, 139, 383
Bst6I CTCTTC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 566
BstF5I GGATG 4 cut(s) 28, 108, 316, 393
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 4 cut(s) 487, 508, 551, 592
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 4 cut(s) 484, 505, 548, 589
BstNI CCWGG 2 cut(s) 510, 705
BstSCI CCNGG 2 cut(s) 508, 703
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 3 cut(s) 45, 84, 218
BstSNI TACGTA 1 cut(s) 65
BstV1I GCAGC 4 cut(s) 266, 335, 424, 625
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BsuRI GGCC 2 cut(s) 172, 513
BtsCI GGATG 4 cut(s) 28, 108, 316, 393
BtsIMutI CAGTG 1 cut(s) 563
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 156
CspAI ACCGGT 1 cut(s) 152
CviAII CATG 6 cut(s) 35, 161, 197, 445, 552, 709
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 566
DpnI GATC 4 cut(s) 486, 507, 550, 591
DpnII GATC 4 cut(s) 484, 505, 548, 589
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco105I TACGTA 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 508, 703
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 6 cut(s) 38, 164, 200, 448, 555, 712
FaqI GGGAC 1 cut(s) 317
FatI CATG 6 cut(s) 34, 160, 196, 444, 551, 708
Fnu4HI GCNGC 5 cut(s) 255, 324, 413, 514, 639
FokI GGATG 4 cut(s) 35, 95, 323, 380
Fsp4HI GCNGC 5 cut(s) 255, 324, 413, 514, 639
FspBI CTAG 2 cut(s) 47, 546
GlaI GCGC 1 cut(s) 558
GluI GCNGC 5 cut(s) 255, 324, 413, 514, 639
HaeIII GGCC 2 cut(s) 172, 513
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 315
HhaI GCGC 1 cut(s) 559
Hin1II CATG 6 cut(s) 38, 164, 200, 448, 555, 712
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HinfI GANTC 4 cut(s) 119, 314, 575, 622
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 654
Hpy8I GTNNAC 1 cut(s) 654
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 10, 139, 383
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 5 cut(s) 280, 412, 432, 497, 659
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 6 cut(s) 38, 164, 200, 448, 555, 712
HspAI GCGC 1 cut(s) 557
Kzo9I GATC 4 cut(s) 484, 505, 548, 589
LmnI GCTCC 2 cut(s) 50, 610
Lsp1109I GCAGC 4 cut(s) 266, 335, 424, 625
LweI GCATC 5 cut(s) 85, 255, 289, 399, 525
MaeI CTAG 2 cut(s) 47, 546
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 3 cut(s) 192, 383, 686
MalI GATC 4 cut(s) 486, 507, 550, 591
MboI GATC 4 cut(s) 484, 505, 548, 589
MboII GAAGA 5 cut(s) 104, 212, 275, 353, 724
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 3 cut(s) 45, 84, 218
MluCI AATT 4 cut(s) 72, 129, 584, 597
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 5 cut(s) 183, 464, 468, 475, 535
Mph1103I ATGCAT 1 cut(s) 499
MseI TTAA 4 cut(s) 188, 596, 645, 693
MslI CAYNNNNRTG 1 cut(s) 492
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 510, 705
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 2 cut(s) 510, 705
NdeII GATC 4 cut(s) 484, 505, 548, 589
NlaIII CATG 6 cut(s) 38, 164, 200, 448, 555, 712
NlaIV GGNNCC 2 cut(s) 333, 507
NmuCI GTSAC 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 499
PfeI GAWTC 3 cut(s) 314, 575, 622
PinAI ACCGGT 1 cut(s) 152
PkrI GCNGC 5 cut(s) 256, 325, 414, 515, 640
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Ppu21I YACGTR 1 cut(s) 65
PshBI ATTAAT 1 cut(s) 693
PsiI TTATAA 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 508, 703
PspGI CCWGG 2 cut(s) 508, 703
PspN4I GGNNCC 2 cut(s) 333, 507
PspPI GGNCC 1 cut(s) 331
PsuI RGATCY 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 4 cut(s) 188, 596, 645, 693
SatI GCNGC 5 cut(s) 255, 324, 413, 514, 639
Sau3AI GATC 4 cut(s) 484, 505, 548, 589
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 510, 705
SduI GDGCHC 3 cut(s) 45, 84, 218
SetI ASST 7 cut(s) 67, 127, 151, 349, 456, 532, 729
SfaNI GCATC 5 cut(s) 85, 255, 289, 399, 525
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 492
SnaBI TACGTA 1 cut(s) 65
Sse9I AATT 4 cut(s) 72, 129, 584, 597
SsiI CCGC 1 cut(s) 514
SspMI CTAG 2 cut(s) 47, 546
StyD4I CCNGG 2 cut(s) 508, 703
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 3 cut(s) 10, 139, 383
TaiI ACGT 1 cut(s) 67
TaqI TCGA 4 cut(s) 175, 230, 407, 675
TaqII GACCGA 1 cut(s) 319
TasI AATT 4 cut(s) 72, 129, 584, 597
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 3 cut(s) 314, 575, 622
Tru1I TTAA 4 cut(s) 188, 596, 645, 693
Tru9I TTAA 4 cut(s) 188, 596, 645, 693
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 4 cut(s) 254, 323, 412, 638
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 5 cut(s) 213, 327, 364, 540, 725
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 570
VpaK11BI GGWCC 1 cut(s) 331
VspI ATTAAT 1 cut(s) 693
XapI RAATTY 1 cut(s) 129
XmaJI CCTAGG 1 cut(s) 46
XspI CTAG 2 cut(s) 47, 546
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.