Rroxscaffold_7G00202020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000321
Physical Location & Seq
Reverse (-)
49858527 .. 49860439
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202020.1

Sequence Viewer

Length: 150 bp
ATGGCGGCATGTGGGGTGCACGCGGGTCCGACCATGTTTGGGGCAAAGGACAAAGATGAGACATTAGCTAAGGAGGAGGTGTCTAGGATGGAAATGATGAAAGGAAAAGATAAGAAGTCTAAGAAAGCTACATTTAAAGTTAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.36

Weight (kDa)

9.46

Isoelectric Point (pI)

20.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 5, 23
AfiI CCNNNNNNNGG 1 cut(s) 39
AluBI AGCT 2 cut(s) 68, 128
AluI AGCT 2 cut(s) 68, 128
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 53
Alw44I GTGCAC 1 cut(s) 17
ApaLI GTGCAC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 21
BspACI CCGC 2 cut(s) 5, 23
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 69, 120
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 21
BstUI CGCG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 26
CviAII CATG 2 cut(s) 9, 34
CviJI RGCY 2 cut(s) 68, 128
CviKI_1 RGCY 2 cut(s) 68, 128
DdeI CTNAG 2 cut(s) 69, 120
DraI TTTAAA 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 26
FaeI CATG 2 cut(s) 12, 37
FaiI YATR 3 cut(s) 10, 35, 148
FatI CATG 2 cut(s) 8, 33
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 12, 37
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 19
HpyF3I CTNAG 2 cut(s) 69, 120
Hsp92II CATG 2 cut(s) 12, 37
MaeI CTAG 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 2 cut(s) 67, 70
MseI TTAA 2 cut(s) 135, 141
MvnI CGCG 1 cut(s) 23
NlaIII CATG 2 cut(s) 12, 37
NlaIV GGNNCC 1 cut(s) 27
NspI RCATGY 1 cut(s) 12
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 135, 141
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 21
SetI ASST 3 cut(s) 70, 81, 130
SgeI CNNG 6 cut(s) 21, 32, 34, 36, 46, 96
SinI GGWCC 1 cut(s) 26
SsiI CCGC 2 cut(s) 5, 23
SspMI CTAG 1 cut(s) 84
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 135, 141
Tru9I TTAA 2 cut(s) 135, 141
TspDTI ATGAA 1 cut(s) 113
VneI GTGCAC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 26
XceI RCATGY 1 cut(s) 12
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.