Rroxscaffold_5G00356220

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000321
Physical Location & Seq
Forward (+)
35423051 .. 35423400
350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356220.1

Sequence Viewer

Length: 261 bp
ATGAAGGAAGAGGATCACTTGTATGCATTTGTGGATCCTGGCCGCATCTCTAATGAAGCTGGAAAGGTTGAGGCAAGATCATGTGCGCTATCATTAAGATTAGAGTCTGCCCAATTAGATCAGTTAATTATTGCTCCTTATAATACAGGGAATCATTGGTTGTTGGCTGCCATTAACCCGTTTATTGCATTGGTGTATTATTTCGACCCATTGGGTAACACTAACATTAATCCAGGAATGAAGAACATCGTGGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

86

Amino Acids

9.59

Weight (kDa)

4.89

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AciI CCGC 1 cut(s) 43
AclWI GGATC 3 cut(s) 21, 29, 42
AcoI YGGCCR 1 cut(s) 40
AjnI CCWGG 2 cut(s) 37, 232
AluBI AGCT 2 cut(s) 59, 256
AluI AGCT 2 cut(s) 59, 256
AlwI GGATC 3 cut(s) 21, 29, 42
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 167
AseI ATTAAT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 88
BamHI GGATCC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 154
BciT130I CCWGG 2 cut(s) 39, 234
BisI GCNGC 2 cut(s) 43, 168
BlsI GCNGC 2 cut(s) 44, 169
Bme1390I CCNGG 2 cut(s) 39, 234
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 39, 234
BmsI GCATC 1 cut(s) 54
BseBI CCWGG 2 cut(s) 39, 234
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 42
BsnI GGCC 1 cut(s) 42
Bsp143I GATC 4 cut(s) 13, 34, 77, 118
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 3 cut(s) 21, 29, 42
BssMI GATC 4 cut(s) 13, 34, 77, 118
Bst2UI CCWGG 2 cut(s) 39, 234
Bst6I CTCTTC 1 cut(s) 3
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 4 cut(s) 16, 37, 80, 121
BstMBI GATC 4 cut(s) 13, 34, 77, 118
BstNI CCWGG 2 cut(s) 39, 234
BstSCI CCNGG 2 cut(s) 37, 232
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 42
CfoI GCGC 1 cut(s) 88
CviAII CATG 1 cut(s) 81
CviJI RGCY 4 cut(s) 42, 59, 167, 256
CviKI_1 RGCY 4 cut(s) 42, 59, 167, 256
DpnI GATC 4 cut(s) 15, 36, 79, 120
DpnII GATC 4 cut(s) 13, 34, 77, 118
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EcoRII CCWGG 2 cut(s) 37, 232
EcoT22I ATGCAT 1 cut(s) 28
FaeI CATG 1 cut(s) 84
FaiI YATR 3 cut(s) 24, 82, 141
FatI CATG 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 43, 168
Fsp4HI GCNGC 2 cut(s) 43, 168
GlaI GCGC 1 cut(s) 87
GluI GCNGC 2 cut(s) 43, 168
HaeIII GGCC 1 cut(s) 42
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 84
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 2 cut(s) 104, 151
HpyCH4V TGCA 2 cut(s) 26, 188
Hsp92II CATG 1 cut(s) 84
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 4 cut(s) 13, 34, 77, 118
LmnI GCTCC 2 cut(s) 139, 253
LpnPI CCDG 6 cut(s) 24, 45, 51, 132, 219, 246
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 215
MalI GATC 4 cut(s) 15, 36, 79, 120
MboI GATC 4 cut(s) 13, 34, 77, 118
MboII GAAGA 2 cut(s) 20, 253
MflI RGATCY 1 cut(s) 34
MluCI AATT 2 cut(s) 113, 126
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 2 cut(s) 4, 64
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 4 cut(s) 95, 125, 174, 228
MslI CAYNNNNRTG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 39, 234
MvaI CCWGG 2 cut(s) 39, 234
NdeII GATC 4 cut(s) 13, 34, 77, 118
NlaIII CATG 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 28
PfeI GAWTC 1 cut(s) 151
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 2 cut(s) 44, 169
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 228
PsiI TTATAA 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 37, 232
PspGI CCWGG 2 cut(s) 37, 232
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 4 cut(s) 95, 125, 174, 228
SatI GCNGC 2 cut(s) 43, 168
Sau3AI GATC 4 cut(s) 13, 34, 77, 118
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 39, 234
SetI ASST 3 cut(s) 61, 69, 258
SfaNI GCATC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 2 cut(s) 113, 126
SsiI CCGC 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 37, 232
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 113, 126
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 4 cut(s) 95, 125, 174, 228
Tru9I TTAA 4 cut(s) 95, 125, 174, 228
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 17, 69, 254
VspI ATTAAT 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.