RchiOBHm_Chr3g0482281

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000321
Physical Location & Seq
Forward (+)
28437218 .. 28441676
4459 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44715

Sequence Viewer

Length: 336 bp
ATGGATCCAGAAGAAGAAAATCATGATACTGAAGATGACTTGTCATCTGATGAGAAGAAGGGGAGAGGTCCAACTCTGATGTCCGACATTATTCATAGTAGGAGTAAGGGGGCTCGAATGGAAGTCACATATAACAAAAAGGGGCAACCAATTGGTCTGGGAGGGAAGAGGCTAGCCACTTTTATTGGGGTAATGGCTCGAACTACCATCCCAATCACATATGAGACTTGGCCAGCCGTGAAGAATTCACTTAAAGAAATTATATGGAGTATGGTTCAGGTATGTGCAGCGTTATTTTTTAATTTTCCTTATAAGTTTTGTTTGAACTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

6.12

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 51
AgsI TTSAA 2 cut(s) 325, 332
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 68
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 6
BmtI GCTAGC 1 cut(s) 176
BseGI GGATG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 232
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 12
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 174, 234
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 4
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 174, 234
CciI TCATGA 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 68
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 1 cut(s) 23
CviJI RGCY 6 cut(s) 113, 172, 176, 197, 232, 236
CviKI_1 RGCY 6 cut(s) 113, 172, 176, 197, 232, 236
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 1 cut(s) 26
FatI CATG 1 cut(s) 22
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 173
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 49, 78, 85
Hpy188III TCNNGA 2 cut(s) 8, 23
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 287
Hsp92II CATG 1 cut(s) 26
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 21, 143, 246, 263
Lsp1109I GCAGC 1 cut(s) 299
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 6 cut(s) 23, 26, 44, 67, 178, 253
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 4 cut(s) 150, 244, 258, 301
MluNI TGGCCA 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 95, 108
MnlI CCTC 3 cut(s) 59, 155, 162
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
MseI TTAA 2 cut(s) 252, 300
Msp20I TGGCCA 1 cut(s) 232
MunI CAATTG 1 cut(s) 150
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 124
PagI TCATGA 1 cut(s) 22
PkrI GCNGC 1 cut(s) 289
PsiI TTATAA 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 2 cut(s) 252, 300
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 115
SetI ASST 2 cut(s) 70, 282
SinI GGWCC 1 cut(s) 68
Sse9I AATT 4 cut(s) 150, 244, 258, 301
SspMI CTAG 1 cut(s) 173
TaqI TCGA 2 cut(s) 115, 199
TasI AATT 4 cut(s) 150, 244, 258, 301
Tru1I TTAA 2 cut(s) 252, 300
Tru9I TTAA 2 cut(s) 252, 300
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.