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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1077 |
| Acc36I | ACCTGC | 1 cut(s) | 1414 |
| AccI | GTMKAC | 2 cut(s) | 150, 441 |
| AccII | CGCG | 1 cut(s) | 341 |
| AciI | CCGC | 2 cut(s) | 339, 979 |
| AclWI | GGATC | 9 cut(s) | 56, 69, 71, 84, 133, 957, 965, 978, 1288 |
| AcoI | YGGCCR | 1 cut(s) | 976 |
| AfaI | GTAC | 4 cut(s) | 528, 532, 622, 744 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 500 |
| AflIII | ACRYGT | 2 cut(s) | 42, 105 |
| AgsI | TTSAA | 2 cut(s) | 696, 934 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 647 |
| AjnI | CCWGG | 3 cut(s) | 973, 1168, 1276 |
| AluBI | AGCT | 8 cut(s) | 83, 137, 224, 433, 788, 995, 1192, 1344 |
| AluI | AGCT | 8 cut(s) | 83, 137, 224, 433, 788, 995, 1192, 1344 |
| Alw21I | GWGCWC | 1 cut(s) | 683 |
| Alw26I | GTCTC | 4 cut(s) | 96, 389, 907, 1367 |
| AlwI | GGATC | 9 cut(s) | 56, 69, 71, 84, 133, 957, 965, 978, 1288 |
| Ama87I | CYCGRG | 1 cut(s) | 65 |
| AoxI | GGCC | 2 cut(s) | 635, 976 |
| ApeKI | GCWGC | 4 cut(s) | 719, 877, 1103, 1341 |
| AspLEI | GCGC | 1 cut(s) | 1024 |
| AspS9I | GGNCC | 2 cut(s) | 491, 796 |
| AsuHPI | GGTGA | 1 cut(s) | 602 |
| AvaI | CYCGRG | 1 cut(s) | 65 |
| AvaII | GGWCC | 2 cut(s) | 491, 796 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 612, 645 |
| BamHI | GGATCC | 3 cut(s) | 61, 76, 970 |
| Bbv12I | GWGCWC | 1 cut(s) | 683 |
| BbvI | GCAGC | 4 cut(s) | 731, 889, 1090, 1353 |
| BccI | CCATC | 4 cut(s) | 268, 482, 803, 1424 |
| BciT130I | CCWGG | 3 cut(s) | 975, 1170, 1278 |
| BcoDI | GTCTC | 4 cut(s) | 96, 389, 907, 1367 |
| BfaI | CTAG | 2 cut(s) | 138, 1459 |
| BfmI | CTRYAG | 1 cut(s) | 783 |
| BfuAI | ACCTGC | 1 cut(s) | 1414 |
| BglII | AGATCT | 1 cut(s) | 113 |
| BisI | GCNGC | 5 cut(s) | 720, 878, 979, 1104, 1342 |
| BlsI | GCNGC | 5 cut(s) | 721, 879, 980, 1105, 1343 |
| Bme1390I | CCNGG | 3 cut(s) | 975, 1170, 1278 |
| Bme18I | GGWCC | 2 cut(s) | 491, 796 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 647 |
| BmeT110I | CYCGRG | 1 cut(s) | 65 |
| BmgT120I | GGNCC | 2 cut(s) | 491, 796 |
| BmiI | GGNNCC | 4 cut(s) | 63, 78, 798, 972 |
| BmrFI | CCNGG | 3 cut(s) | 975, 1170, 1278 |
| BmsI | GCATC | 7 cut(s) | 15, 87, 206, 550, 720, 864, 990 |
| BpuEI | CTTGAG | 1 cut(s) | 1368 |
| BsaAI | YACGTR | 1 cut(s) | 530 |
| BsaBI | GATNNNNATC | 1 cut(s) | 564 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 500 |
| Bse3DI | GCAATG | 1 cut(s) | 471 |
| Bse8I | GATNNNNATC | 1 cut(s) | 564 |
| BseBI | CCWGG | 3 cut(s) | 975, 1170, 1278 |
| BseGI | GGATG | 1 cut(s) | 493 |
| BseJI | GATNNNNATC | 1 cut(s) | 564 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 500 |
| BseMI | GCAATG | 1 cut(s) | 471 |
| BseMII | CTCAG | 3 cut(s) | 159, 549, 698 |
| BseRI | GAGGAG | 1 cut(s) | 1403 |
| BseXI | GCAGC | 4 cut(s) | 731, 889, 1090, 1353 |
| Bsh1236I | CGCG | 1 cut(s) | 341 |
| BshFI | GGCC | 2 cut(s) | 637, 978 |
| BsiHKAI | GWGCWC | 1 cut(s) | 683 |
| BsiHKCI | CYCGRG | 1 cut(s) | 65 |
| BslFI | GGGAC | 3 cut(s) | 330, 782, 1251 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 500 |
| BsmAI | GTCTC | 4 cut(s) | 96, 389, 907, 1367 |
| BsmFI | GGGAC | 3 cut(s) | 330, 782, 1251 |
| BsnI | GGCC | 2 cut(s) | 637, 978 |
| BsoBI | CYCGRG | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 1 cut(s) | 683 |
| BspACI | CCGC | 2 cut(s) | 339, 979 |
| BspANI | GGCC | 2 cut(s) | 637, 978 |
| BspCNI | CTCAG | 3 cut(s) | 158, 548, 697 |
| BspFNI | CGCG | 1 cut(s) | 341 |
| BspHI | TCATGA | 1 cut(s) | 1305 |
| BspLI | GGNNCC | 4 cut(s) | 63, 78, 798, 972 |
| BspMI | ACCTGC | 1 cut(s) | 1414 |
| BspPI | GGATC | 9 cut(s) | 56, 69, 71, 84, 133, 957, 965, 978, 1288 |
| BsrDI | GCAATG | 1 cut(s) | 471 |
| Bst2UI | CCWGG | 3 cut(s) | 975, 1170, 1278 |
| Bst4CI | ACNGT | 3 cut(s) | 475, 604, 848 |
| Bst6I | CTCTTC | 2 cut(s) | 660, 939 |
| BstBAI | YACGTR | 1 cut(s) | 530 |
| BstC8I | GCNNGC | 3 cut(s) | 435, 612, 1194 |
| BstDEI | CTNAG | 6 cut(s) | 145, 174, 189, 535, 684, 1031 |
| BstF5I | GGATG | 1 cut(s) | 493 |
| BstFNI | CGCG | 1 cut(s) | 341 |
| BstHHI | GCGC | 1 cut(s) | 1024 |
| BstMAI | GTCTC | 4 cut(s) | 96, 389, 907, 1367 |
| BstNI | CCWGG | 3 cut(s) | 975, 1170, 1278 |
| BstNSI | RCATGY | 2 cut(s) | 46, 109 |
| BstSCI | CCNGG | 3 cut(s) | 973, 1168, 1276 |
| BstSFI | CTRYAG | 1 cut(s) | 783 |
| BstSNI | TACGTA | 1 cut(s) | 530 |
| BstUI | CGCG | 1 cut(s) | 341 |
| BstV1I | GCAGC | 4 cut(s) | 731, 889, 1090, 1353 |
| BstX2I | RGATCY | 5 cut(s) | 61, 76, 113, 125, 970 |
| BstYI | RGATCY | 5 cut(s) | 61, 76, 113, 125, 970 |
| BsuRI | GGCC | 2 cut(s) | 637, 978 |
| BtsCI | GGATG | 1 cut(s) | 493 |
| BveI | ACCTGC | 1 cut(s) | 1414 |
| Cac8I | GCNNGC | 3 cut(s) | 435, 612, 1194 |
| CciI | TCATGA | 1 cut(s) | 1305 |
| CfoI | GCGC | 1 cut(s) | 1024 |
| Cfr13I | GGNCC | 2 cut(s) | 491, 796 |
| Csp6I | GTAC | 4 cut(s) | 527, 531, 621, 743 |
| CviQI | GTAC | 4 cut(s) | 527, 531, 621, 743 |
| DdeI | CTNAG | 6 cut(s) | 145, 174, 189, 535, 684, 1031 |
| DraI | TTTAAA | 1 cut(s) | 1353 |
| DriI | GACNNNNNGTC | 1 cut(s) | 647 |
| EaeI | YGGCCR | 1 cut(s) | 976 |
| Eam1104I | CTCTTC | 2 cut(s) | 660, 939 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 647 |
| EarI | CTCTTC | 2 cut(s) | 660, 939 |
| Eco105I | TACGTA | 1 cut(s) | 530 |
| Eco47I | GGWCC | 2 cut(s) | 491, 796 |
| Eco88I | CYCGRG | 1 cut(s) | 65 |
| EcoRII | CCWGG | 3 cut(s) | 973, 1168, 1276 |
| EcoT22I | ATGCAT | 1 cut(s) | 964 |
| FaqI | GGGAC | 3 cut(s) | 330, 782, 1251 |
| FblI | GTMKAC | 2 cut(s) | 150, 441 |
| Fnu4HI | GCNGC | 5 cut(s) | 720, 878, 979, 1104, 1342 |
| FokI | GGATG | 1 cut(s) | 500 |
| Fsp4HI | GCNGC | 5 cut(s) | 720, 878, 979, 1104, 1342 |
| FspBI | CTAG | 2 cut(s) | 138, 1459 |
| GlaI | GCGC | 1 cut(s) | 1023 |
| GluI | GCNGC | 5 cut(s) | 720, 878, 979, 1104, 1342 |
| HaeIII | GGCC | 2 cut(s) | 637, 978 |
| HhaI | GCGC | 1 cut(s) | 1024 |
| Hin6I | GCGC | 1 cut(s) | 1022 |
| HinP1I | GCGC | 1 cut(s) | 1022 |
| HincII | GTYRAC | 2 cut(s) | 151, 352 |
| HindII | GTYRAC | 2 cut(s) | 151, 352 |
| HinfI | GANTC | 4 cut(s) | 779, 1040, 1087, 1231 |
| HphI | GGTGA | 1 cut(s) | 602 |
| Hpy166II | GTNNAC | 5 cut(s) | 151, 250, 352, 442, 1119 |
| Hpy188I | TCNGA | 4 cut(s) | 113, 130, 243, 687 |
| Hpy188III | TCNNGA | 3 cut(s) | 65, 1306, 1385 |
| Hpy8I | GTNNAC | 5 cut(s) | 151, 250, 352, 442, 1119 |
| HpyAV | CCTTC | 2 cut(s) | 286, 934 |
| HpyCH4III | ACNGT | 3 cut(s) | 475, 604, 848 |
| HpyCH4IV | ACGT | 1 cut(s) | 529 |
| HpyCH4V | TGCA | 8 cut(s) | 28, 230, 464, 711, 877, 897, 962, 1124 |
| HpyF3I | CTNAG | 6 cut(s) | 145, 174, 189, 535, 684, 1031 |
| HpySE526I | ACGT | 1 cut(s) | 529 |
| HspAI | GCGC | 1 cut(s) | 1022 |
| LmnI | GCTCC | 2 cut(s) | 515, 1075 |
| Lsp1109I | GCAGC | 4 cut(s) | 731, 889, 1090, 1353 |
| LweI | GCATC | 7 cut(s) | 15, 87, 206, 550, 720, 864, 990 |
| MaeI | CTAG | 2 cut(s) | 138, 1459 |
| MaeII | ACGT | 1 cut(s) | 529 |
| MaeIII | GTNAC | 2 cut(s) | 590, 657 |
| MboII | GAAGA | 9 cut(s) | 218, 560, 569, 677, 740, 818, 956, 1189, 1236 |
| MfeI | CAATTG | 2 cut(s) | 14, 267 |
| MflI | RGATCY | 5 cut(s) | 61, 76, 113, 125, 970 |
| MhlI | GDGCHC | 1 cut(s) | 683 |
| MluCI | AATT | 9 cut(s) | 14, 20, 210, 267, 863, 1049, 1062, 1323, 1347 |
| MlyI | GAGTC | 1 cut(s) | 1049 |
| MmeI | TCCRAC | 4 cut(s) | 54, 324, 388, 465 |
| Mph1103I | ATGCAT | 1 cut(s) | 964 |
| MseI | TTAA | 7 cut(s) | 653, 1061, 1110, 1200, 1209, 1260, 1352 |
| MslI | CAYNNNNRTG | 2 cut(s) | 957, 1202 |
| MspR9I | CCNGG | 3 cut(s) | 975, 1170, 1278 |
| MunI | CAATTG | 2 cut(s) | 14, 267 |
| MvaI | CCWGG | 3 cut(s) | 975, 1170, 1278 |
| MvnI | CGCG | 1 cut(s) | 341 |
| NlaIV | GGNNCC | 4 cut(s) | 63, 78, 798, 972 |
| NmuCI | GTSAC | 2 cut(s) | 590, 657 |
| NsiI | ATGCAT | 1 cut(s) | 964 |
| NspI | RCATGY | 2 cut(s) | 46, 109 |
| PagI | TCATGA | 1 cut(s) | 1305 |
| PciI | ACATGT | 2 cut(s) | 42, 105 |
| PfeI | GAWTC | 3 cut(s) | 779, 1087, 1231 |
| PfoI | TCCNGGA | 1 cut(s) | 1168 |
| PkrI | GCNGC | 5 cut(s) | 721, 879, 980, 1105, 1343 |
| PleI | GAGTC | 1 cut(s) | 1048 |
| PpsI | GAGTC | 1 cut(s) | 1048 |
| Ppu21I | YACGTR | 1 cut(s) | 530 |
| PscI | ACATGT | 2 cut(s) | 42, 105 |
| PsiI | TTATAA | 1 cut(s) | 1077 |
| Psp6I | CCWGG | 3 cut(s) | 973, 1168, 1276 |
| PspGI | CCWGG | 3 cut(s) | 973, 1168, 1276 |
| PspN4I | GGNNCC | 4 cut(s) | 63, 78, 798, 972 |
| PspPI | GGNCC | 2 cut(s) | 491, 796 |
| PsuI | RGATCY | 5 cut(s) | 61, 76, 113, 125, 970 |
| RsaI | GTAC | 4 cut(s) | 528, 532, 622, 744 |
| RsaNI | GTAC | 4 cut(s) | 527, 531, 621, 743 |
| RseI | CAYNNNNRTG | 2 cut(s) | 957, 1202 |
| SalI | GTCGAC | 1 cut(s) | 149 |
| SaqAI | TTAA | 7 cut(s) | 653, 1061, 1110, 1200, 1209, 1260, 1352 |
| SatI | GCNGC | 5 cut(s) | 720, 878, 979, 1104, 1342 |
| Sau96I | GGNCC | 2 cut(s) | 491, 796 |
| SchI | GAGTC | 1 cut(s) | 1049 |
| ScrFI | CCNGG | 3 cut(s) | 975, 1170, 1278 |
| SduI | GDGCHC | 1 cut(s) | 683 |
| SfaNI | GCATC | 7 cut(s) | 15, 87, 206, 550, 720, 864, 990 |
| SfcI | CTRYAG | 1 cut(s) | 783 |
| SinI | GGWCC | 2 cut(s) | 491, 796 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 957, 1202 |
| SmlI | CTYRAG | 1 cut(s) | 1383 |
| SmoI | CTYRAG | 1 cut(s) | 1383 |
| SnaBI | TACGTA | 1 cut(s) | 530 |
| Sse9I | AATT | 9 cut(s) | 14, 20, 210, 267, 863, 1049, 1062, 1323, 1347 |
| SsiI | CCGC | 2 cut(s) | 339, 979 |
| SspMI | CTAG | 2 cut(s) | 138, 1459 |
| StyD4I | CCNGG | 3 cut(s) | 973, 1168, 1276 |
| TaaI | ACNGT | 3 cut(s) | 475, 604, 848 |
| TaiI | ACGT | 1 cut(s) | 532 |
| TaqI | TCGA | 5 cut(s) | 150, 640, 887, 1140, 1405 |
| TaqII | GACCGA | 2 cut(s) | 508, 784 |
| TasI | AATT | 9 cut(s) | 14, 20, 210, 267, 863, 1049, 1062, 1323, 1347 |
| TauI | GCSGC | 1 cut(s) | 981 |
| TfiI | GAWTC | 3 cut(s) | 779, 1087, 1231 |
| Tru1I | TTAA | 7 cut(s) | 653, 1061, 1110, 1200, 1209, 1260, 1352 |
| Tru9I | TTAA | 7 cut(s) | 653, 1061, 1110, 1200, 1209, 1260, 1352 |
| TseFI | GTSAC | 2 cut(s) | 590, 657 |
| TseI | GCWGC | 4 cut(s) | 719, 877, 1103, 1341 |
| Tsp45I | GTSAC | 2 cut(s) | 590, 657 |
| TspGWI | ACGGA | 1 cut(s) | 730 |
| VpaK11BI | GGWCC | 2 cut(s) | 491, 796 |
| XceI | RCATGY | 2 cut(s) | 46, 109 |
| XmiI | GTMKAC | 2 cut(s) | 150, 441 |
| XspI | CTAG | 2 cut(s) | 138, 1459 |
| Zsp2I | ATGCAT | 1 cut(s) | 964 |