RLG00000001069

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000321
Physical Location & Seq
Forward (+)
10093087 .. 10094704
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001069

Sequence Viewer

Length: 543 bp
ATGGTCCAAGGTAGCCGTGTGTTTGAGAAATCTAGTTGCTCAGTTCAGAAGGACAAAGATGAGACATTATCTAAGGAGGAGGAGTCTAGGGTGGAAATGATGAAACGAAAAGAGAAGAAGTCTAAGAAAGCTACATTTAAAGTCAATGTACAAGAGGCTTTGAAGACTAGTACTAAAATTCCAAAAGAAATCGAGCAGGTAAAGCAACACAATAAAGAAGAATCAGCTCTGAAACCTGGAAAAAACAAACAAGATGGCTATACAGAGGTTCCCAAAGACAAGCCAAAAGATATTGAAAAGATCCATGCATCTTCCTTCTCTCATGATTTTGGAAAACGAGATGAAAGATCGTTTGCGTTGTCAGTAAGATTAGAGAAAAGCAAGGAACAACAATTGATTTTTGCTCCTTACAATTTTGGGTTTCATTGGGTTATGGTTGTAATTAATCCTTATAGTGATATGGTGTATTACTTGGACTCTCTTAATCCTGTTGACATAGATCATGGATTAAAATGTGTTATAGATCGCTCTAAGGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

181

Amino Acids

20.86

Weight (kDa)

9.0

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 2 cut(s) 150, 172
AgsI TTSAA 2 cut(s) 163, 296
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 131, 227
AluI AGCT 2 cut(s) 131, 227
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 177
AseI ATTAAT 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 56
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 3 cut(s) 33, 87, 168
BfuAI ACCTGC 1 cut(s) 187
BmcAI AGTACT 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 54
BseRI GAGGAG 2 cut(s) 92, 95
BsmAI GTCTC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 148
Bsp143I GATC 4 cut(s) 300, 347, 499, 523
BspCNI CTCAG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 4 cut(s) 300, 347, 499, 523
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 148
BstDEI CTNAG 4 cut(s) 40, 72, 123, 531
BstF5I GGATG 1 cut(s) 541
BstKTI GATC 4 cut(s) 303, 350, 502, 526
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 4 cut(s) 300, 347, 499, 523
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BtsCI GGATG 1 cut(s) 541
BveI ACCTGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 149, 171
CviAII CATG 3 cut(s) 305, 323, 503
CviJI RGCY 6 cut(s) 15, 131, 158, 227, 258, 283
CviKI_1 RGCY 6 cut(s) 15, 131, 158, 227, 258, 283
CviQI GTAC 2 cut(s) 149, 171
DdeI CTNAG 4 cut(s) 40, 72, 123, 531
DpnI GATC 4 cut(s) 302, 349, 501, 525
DpnII GATC 4 cut(s) 300, 347, 499, 523
DraI TTTAAA 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 3 cut(s) 308, 326, 506
FaiI YATR 9 cut(s) 261, 306, 324, 434, 453, 461, 497, 504, 521
FatI CATG 3 cut(s) 304, 322, 502
FspBI CTAG 3 cut(s) 33, 87, 168
Hin1II CATG 3 cut(s) 308, 326, 506
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 3 cut(s) 83, 221, 476
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 2 cut(s) 48, 231
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 2 cut(s) 43, 325
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 4 cut(s) 40, 72, 123, 531
Hsp92II CATG 3 cut(s) 308, 326, 506
Kzo9I GATC 4 cut(s) 300, 347, 499, 523
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 4 cut(s) 182, 222, 249, 501
LweI GCATC 1 cut(s) 317
MaeI CTAG 3 cut(s) 33, 87, 168
MalI GATC 4 cut(s) 302, 349, 501, 525
MboI GATC 4 cut(s) 300, 347, 499, 523
MboII GAAGA 4 cut(s) 127, 175, 230, 303
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 1 cut(s) 300
MluCI AATT 4 cut(s) 177, 392, 412, 441
MlyI GAGTC 2 cut(s) 92, 470
MnlI CCTC 4 cut(s) 70, 73, 148, 259
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 5 cut(s) 138, 444, 483, 509, 541
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 1 cut(s) 392
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 4 cut(s) 300, 347, 499, 523
NlaIII CATG 3 cut(s) 308, 326, 506
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 310
PagI TCATGA 1 cut(s) 322
PfeI GAWTC 1 cut(s) 221
PleI GAGTC 2 cut(s) 91, 470
PpsI GAGTC 2 cut(s) 91, 470
PshBI ATTAAT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 300
RsaI GTAC 2 cut(s) 150, 172
RsaNI GTAC 2 cut(s) 149, 171
SaqAI TTAA 5 cut(s) 138, 444, 483, 509, 541
Sau3AI GATC 4 cut(s) 300, 347, 499, 523
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 172
SchI GAGTC 2 cut(s) 92, 470
ScrFI CCNGG 1 cut(s) 237
SetI ASST 6 cut(s) 13, 133, 201, 229, 238, 270
SfaNI GCATC 1 cut(s) 317
SinI GGWCC 1 cut(s) 4
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 4 cut(s) 177, 392, 412, 441
SspMI CTAG 3 cut(s) 33, 87, 168
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 1 cut(s) 7
TaqI TCGA 1 cut(s) 192
TasI AATT 4 cut(s) 177, 392, 412, 441
TatI WGTACW 2 cut(s) 148, 170
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 5 cut(s) 138, 444, 483, 509, 541
Tru9I TTAA 5 cut(s) 138, 444, 483, 509, 541
TspDTI ATGAA 3 cut(s) 116, 357, 413
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 1 cut(s) 177
XspI CTAG 3 cut(s) 33, 87, 168
ZrmI AGTACT 1 cut(s) 172
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.