Rh5AG440500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000321
Physical Location & Seq
Forward (+)
75709587 .. 75709987
401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG440500.1

Sequence Viewer

Length: 303 bp
ATGATATGGAGTATGGTTCAGAAATCATTCATTGTGGATCCAAGAAGCAAGAAAGATGTCTTGAGCAGTGCAGGAAGGAAATGGAAATCATTCAAGAGCACTTTAACTACAAAATATATATTAAAGTATAAAGATCGACGGGGCCTCCTAAAGAAAAAACCTGAAGAATACGAGTTCATCACTCAACCTCAGTGGGAAGCTTTCATGAAATCTCGATTAACTCCTGAATTTTTAGTAGGACACATCTTTTGTTTAACATTAGCTTTAGGTGTCCTCTTTCTATTACTTAATGTTTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

100

Amino Acids

11.82

Weight (kDa)

9.95

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 32, 45
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 2 cut(s) 200, 263
AluI AGCT 2 cut(s) 200, 263
Alw21I GWGCWC 1 cut(s) 101
AlwI GGATC 2 cut(s) 32, 45
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 227
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
Asp700I GAANNNNTTC 2 cut(s) 26, 89
AspS9I GGNCC 1 cut(s) 142
BamHI GGATCC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 39, 143
BpuEI CTTGAG 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
BseMII CTCAG 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 101
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 37, 133
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 39, 143
BspPI GGATC 2 cut(s) 32, 45
BssMI GATC 2 cut(s) 37, 133
BstDEI CTNAG 1 cut(s) 189
BstKTI GATC 2 cut(s) 40, 136
BstMBI GATC 2 cut(s) 37, 133
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 73, 197
CciI TCATGA 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 173, 208
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 144, 200, 263
CviKI_1 RGCY 3 cut(s) 144, 200, 263
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 39, 135
DpnII GATC 2 cut(s) 37, 133
Eco57I CTGAAG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 142
FaeI CATG 1 cut(s) 208
FaiI YATR 6 cut(s) 7, 14, 117, 119, 129, 206
FatI CATG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 5 cut(s) 61, 94, 205, 213, 224
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 2 cut(s) 37, 133
LpnPI CCDG 3 cut(s) 57, 174, 237
MalI GATC 2 cut(s) 39, 135
MboI GATC 2 cut(s) 37, 133
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 1 cut(s) 227
MnlI CCTC 3 cut(s) 155, 198, 284
MroXI GAANNNNTTC 2 cut(s) 26, 89
MseI TTAA 5 cut(s) 104, 122, 218, 254, 288
NdeII GATC 2 cut(s) 37, 133
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 39, 143
PagI TCATGA 1 cut(s) 204
PdmI GAANNNNTTC 2 cut(s) 26, 89
PspN4I GGNNCC 2 cut(s) 39, 143
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 5 cut(s) 104, 122, 218, 254, 288
Sau3AI GATC 2 cut(s) 37, 133
Sau96I GGNCC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 101
SetI ASST 5 cut(s) 163, 190, 202, 265, 271
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 227
TaqI TCGA 2 cut(s) 136, 214
TasI AATT 1 cut(s) 227
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 5 cut(s) 104, 122, 218, 254, 288
Tru9I TTAA 5 cut(s) 104, 122, 218, 254, 288
TscAI CASTG 2 cut(s) 73, 197
TspDTI ATGAA 4 cut(s) 19, 166, 193, 221
TspRI CASTG 2 cut(s) 73, 197
XapI RAATTY 1 cut(s) 227
XmnI GAANNNNTTC 2 cut(s) 26, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.