Rroxscaffold_2G00131520

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000321
Physical Location & Seq
Forward (+)
68206793 .. 68213595
6803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131520.1

Sequence Viewer

Length: 825 bp
ATGGAGCAGAAAGAGAGAAGGGGAAAGTTGCAGAATGCTCATAGAATGTCACGAAAGGGATATGCTGGTTTAGAGGCGGAACTAAAAAAAACTATGAATGAAGATGAACTTGATCTAGCTGTCCTCTGGAAGAAAGGGCGTGAGGACAAAAATGGGAATATCTCCCATGAGACTGTAGGGGAGCAGGCTGCAGAAATGGATACTTTAATGAACAATGAAGGGGATATTTCCAACTCTAACAGTGGATCAAGTGATGATGTCAGGTCAATGGGGTTGGGGACTCCAGAACATTCTAGTAGGGTGAGAGTTGCAGGAGAGTCTCTCATGCCAAATGTTTCACCTCCTCAGTTGGAGCGAGAAAGTGTCATGGATGAGGTCAGAAAGATGATAGAGCAGCAAAGGTTATGGTTTGAAGCCAAGATTTCTTTGTTAGAGGCAAAGATCAGTGGTGAATGCCCAGCCACAAGTATCACACTTCCAACTCCTCTGCTTGCCAAGCCTTCAAAGAAGGGCAGGTGTTCTGGGAAGACAAACGTTGAGGTTAATGAAATTGATTCGGAAGCTTTCTCATTTGTGGGCAGAAGAGAATTCATGAAGGAACATGGAAATTCTTCTATAAAACCTCGAGATTTACCCAATCAAGGTGTGATCCTGCCCAAGTCCCTCAAGCTCCTATACCGTTATGCTGAGCGTGCCATGACTGATGGTGAGCCTATCAGTGTCTTTATGGAAGAAGCCGTATTTGGTATTGCCAAGACTCTCAACATTTTCAAAGAAGATGTTATGCAATTTATGGAAATGAAGGAAATCCCCCTAGGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

274

Amino Acids

30.66

Weight (kDa)

5.63

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 504
AciI CCGC 1 cut(s) 77
AclI AACGTT 1 cut(s) 534
AclWI GGATC 2 cut(s) 253, 643
AcsI RAATTY 2 cut(s) 587, 607
AfiI CCNNNNNNNGG 1 cut(s) 641
AgsI TTSAA 3 cut(s) 413, 504, 772
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AluBI AGCT 3 cut(s) 119, 563, 670
AluI AGCT 3 cut(s) 119, 563, 670
Alw26I GTCTC 2 cut(s) 164, 324
AlwI GGATC 2 cut(s) 253, 643
Ama87I CYCGRG 1 cut(s) 624
ApeKI GCWGC 2 cut(s) 188, 394
ApoI RAATTY 2 cut(s) 587, 607
Asp700I GAANNNNTTC 1 cut(s) 610
AspA2I CCTAGG 1 cut(s) 814
AsuHPI GGTGA 4 cut(s) 313, 330, 461, 719
AvaI CYCGRG 1 cut(s) 624
AvrII CCTAGG 1 cut(s) 814
BbsI GAAGAC 1 cut(s) 533
BbvI GCAGC 2 cut(s) 175, 406
BccI CCATC 1 cut(s) 698
BceAI ACGGC 1 cut(s) 722
BciVI GTATCC 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 164, 324
BfaI CTAG 3 cut(s) 116, 294, 815
BfmI CTRYAG 2 cut(s) 174, 189
BfuAI ACCTGC 1 cut(s) 504
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 2 cut(s) 189, 395
BlnI CCTAGG 1 cut(s) 814
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 2 cut(s) 190, 396
BmeT110I CYCGRG 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 533
BplI GAGNNNNNCTC 2 cut(s) 306, 338
BpmI CTGGAG 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 650
BsaJI CCNNGG 1 cut(s) 814
Bsc4I CCNNNNNNNGG 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 814
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 359, 678
BseRI GAGGAG 2 cut(s) 333, 474
BseXI GCAGC 2 cut(s) 175, 406
BseYI CCCAGC 1 cut(s) 457
BsiHKCI CYCGRG 1 cut(s) 624
BslFI GGGAC 2 cut(s) 292, 646
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 2 cut(s) 164, 324
BsmFI GGGAC 2 cut(s) 292, 646
BsmI GAATGC 2 cut(s) 40, 458
BsoBI CYCGRG 1 cut(s) 624
Bsp143I GATC 4 cut(s) 112, 245, 441, 648
Bsp1720I GCTNAGC 1 cut(s) 687
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 2 cut(s) 358, 679
BspHI TCATGA 1 cut(s) 591
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 504
BspPI GGATC 2 cut(s) 253, 643
BssECI CCNNGG 1 cut(s) 814
BssMI GATC 4 cut(s) 112, 245, 441, 648
BssT1I CCWWGG 1 cut(s) 814
Bst4CI ACNGT 3 cut(s) 175, 242, 680
Bst6I CTCTTC 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 186, 492, 693
BstDEI CTNAG 2 cut(s) 345, 687
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 4 cut(s) 115, 248, 444, 651
BstMAI GTCTC 2 cut(s) 164, 324
BstMBI GATC 4 cut(s) 112, 245, 441, 648
BstMWI GCNNNNNNNGC 2 cut(s) 496, 692
BstSFI CTRYAG 2 cut(s) 174, 189
BstV1I GCAGC 2 cut(s) 175, 406
BstV2I GAAGAC 1 cut(s) 533
BsuI GTATCC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 3 cut(s) 247, 451, 724
BveI ACCTGC 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 186, 492, 693
CciI TCATGA 1 cut(s) 591
CviAII CATG 6 cut(s) 167, 325, 367, 592, 602, 697
CviJI RGCY 9 cut(s) 119, 188, 416, 461, 499, 563, 670, 712, 737
CviKI_1 RGCY 9 cut(s) 119, 188, 416, 461, 499, 563, 670, 712, 737
DdeI CTNAG 2 cut(s) 345, 687
DpnI GATC 4 cut(s) 114, 247, 443, 650
DpnII GATC 4 cut(s) 112, 245, 441, 648
Eam1104I CTCTTC 1 cut(s) 577
EarI CTCTTC 1 cut(s) 577
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 814
Eco88I CYCGRG 1 cut(s) 624
EcoRI GAATTC 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 814
FaeI CATG 6 cut(s) 170, 328, 370, 595, 605, 700
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 2 cut(s) 292, 646
FatI CATG 6 cut(s) 166, 324, 366, 591, 601, 696
Fnu4HI GCNGC 2 cut(s) 189, 395
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 189, 395
FspBI CTAG 3 cut(s) 116, 294, 815
GluI GCNGC 2 cut(s) 189, 395
GsaI CCCAGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 267
Hin1II CATG 6 cut(s) 170, 328, 370, 595, 605, 700
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 4 cut(s) 280, 317, 554, 757
HphI GGTGA 4 cut(s) 313, 330, 461, 719
Hpy188I TCNGA 2 cut(s) 380, 559
Hpy188III TCNNGA 5 cut(s) 51, 127, 284, 592, 626
HpyAV CCTTC 6 cut(s) 12, 212, 502, 510, 589, 796
HpyCH4III ACNGT 3 cut(s) 175, 242, 680
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 5 cut(s) 31, 191, 311, 787, 821
HpyF10VI GCNNNNNNNGC 2 cut(s) 496, 692
HpyF3I CTNAG 2 cut(s) 345, 687
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 6 cut(s) 170, 328, 370, 595, 605, 700
Kzo9I GATC 4 cut(s) 112, 245, 441, 648
LmnI GCTCC 4 cut(s) 4, 181, 352, 675
Lsp1109I GCAGC 2 cut(s) 175, 406
MaeI CTAG 3 cut(s) 116, 294, 815
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 48
MalI GATC 4 cut(s) 114, 247, 443, 650
MboI GATC 4 cut(s) 112, 245, 441, 648
MboII GAAGA 7 cut(s) 113, 142, 538, 594, 603, 743, 788
MluCI AATT 4 cut(s) 549, 587, 607, 788
MlyI GAGTC 3 cut(s) 274, 326, 751
MmeI TCCRAC 3 cut(s) 255, 330, 503
MroXI GAANNNNTTC 1 cut(s) 610
MseI TTAA 2 cut(s) 206, 543
Mva1269I GAATGC 2 cut(s) 40, 458
MwoI GCNNNNNNNGC 2 cut(s) 496, 692
NdeII GATC 4 cut(s) 112, 245, 441, 648
NlaIII CATG 6 cut(s) 170, 328, 370, 595, 605, 700
NmuCI GTSAC 1 cut(s) 48
PaeR7I CTCGAG 1 cut(s) 624
PagI TCATGA 1 cut(s) 591
PaqCI CACCTGC 1 cut(s) 504
PctI GAATGC 2 cut(s) 40, 458
PdmI GAANNNNTTC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 554
PkrI GCNGC 2 cut(s) 190, 396
PleI GAGTC 3 cut(s) 274, 325, 751
PpsI GAGTC 3 cut(s) 274, 325, 751
Psp1406I AACGTT 1 cut(s) 534
PspFI CCCAGC 1 cut(s) 457
PstI CTGCAG 1 cut(s) 193
SaqAI TTAA 2 cut(s) 206, 543
SatI GCNGC 2 cut(s) 189, 395
Sau3AI GATC 4 cut(s) 112, 245, 441, 648
SchI GAGTC 3 cut(s) 274, 326, 751
SfcI CTRYAG 2 cut(s) 174, 189
Sfr274I CTCGAG 1 cut(s) 624
SlaI CTCGAG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 624, 665
SmoI CTYRAG 2 cut(s) 624, 665
Sse9I AATT 4 cut(s) 549, 587, 607, 788
SsiI CCGC 1 cut(s) 77
SspMI CTAG 3 cut(s) 116, 294, 815
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 3 cut(s) 175, 242, 680
TaiI ACGT 1 cut(s) 537
TaqI TCGA 1 cut(s) 625
TasI AATT 4 cut(s) 549, 587, 607, 788
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 206, 543
Tru9I TTAA 2 cut(s) 206, 543
TscAI CASTG 3 cut(s) 247, 451, 724
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 2 cut(s) 188, 394
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 9 cut(s) 110, 114, 120, 224, 231, 561, 580, 608, 815
TspRI CASTG 3 cut(s) 247, 451, 724
XapI RAATTY 2 cut(s) 587, 607
XhoI CTCGAG 1 cut(s) 624
XmaJI CCTAGG 1 cut(s) 814
XmnI GAANNNNTTC 1 cut(s) 610
XspI CTAG 3 cut(s) 116, 294, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.