pycom03g19580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000321
Physical Location & Seq
Forward (+)
20164590 .. 20165777
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g19580.2

Sequence Viewer

Length: 384 bp
ATGAAATATCAACGCTCTCTTTCTCCTCAAGACGGAAGACTCACTGTCTTTCTATCTCTCCCTCTATTTCTCTCTCTCTGGGACGCCCACAGTCTTCATCACACAGTCTTCATCGCGAGTACTCACTGTCTTTCTATCTCTCCCTCTCTTTCTCTCTCTCTGGGACGCCCACAGTCTTCATCAACCAGATTGATTGTTTTCCCCAAATTTCACTCAAAACCTAATTGTGTATGGTTTCATTGGTTGTTGGATATTATTGACCCCTACGAGGAATTAGTGTATTATATGGACTCACTTAATTGGATACAGATAGATCTTGGAATGAAGGACATTGTTGAACTATCACTGAAGATGTTTAAAGCTCAAAAGGGAATAAAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.65

Weight (kDa)

8.6

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 116
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 368
AcyI GRCGYC 2 cut(s) 84, 166
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 2 cut(s) 32, 268
AgsI TTSAA 1 cut(s) 338
AhdI GACNNNNNGTC 1 cut(s) 44
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
ApoI RAATTY 1 cut(s) 206
BbsI GAAGAC 4 cut(s) 43, 86, 100, 168
BciVI GTATCC 1 cut(s) 297
BfuI GTATCC 1 cut(s) 297
BglII AGATCT 1 cut(s) 313
BmcAI AGTACT 1 cut(s) 121
BmeRI GACNNNNNGTC 1 cut(s) 44
BpiI GAAGAC 4 cut(s) 43, 86, 100, 168
BpuEI CTTGAG 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 84, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 268
BseLI CCNNNNNNNGG 2 cut(s) 32, 268
BseRI GAGGAG 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 116
BslFI GGGAC 2 cut(s) 95, 177
BslI CCNNNNNNNGG 2 cut(s) 32, 268
BsmFI GGGAC 2 cut(s) 95, 177
Bsp143I GATC 1 cut(s) 313
Bsp68I TCGCGA 1 cut(s) 116
BspFNI CGCG 1 cut(s) 116
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 2 cut(s) 84, 166
Bst4CI ACNGT 5 cut(s) 46, 92, 106, 128, 174
BstACI GRCGYC 2 cut(s) 84, 166
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstUI CGCG 1 cut(s) 116
BstV2I GAAGAC 4 cut(s) 43, 86, 100, 168
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 97
BtsIMutI CAGTG 3 cut(s) 42, 124, 344
BtuMI TCGCGA 1 cut(s) 116
CseI GACGC 2 cut(s) 92, 174
Csp6I GTAC 1 cut(s) 120
CviJI RGCY 1 cut(s) 362
CviKI_1 RGCY 1 cut(s) 362
CviQI GTAC 1 cut(s) 120
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraI TTTAAA 1 cut(s) 358
DriI GACNNNNNGTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 368
FaiI YATR 3 cut(s) 232, 285, 287
FaqI GGGAC 2 cut(s) 95, 177
HgaI GACGC 2 cut(s) 92, 174
Hin1I GRCGYC 2 cut(s) 84, 166
HinfI GANTC 2 cut(s) 39, 290
Hpy188III TCNNGA 2 cut(s) 29, 115
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 5 cut(s) 46, 92, 106, 128, 174
Hsp92I GRCGYC 2 cut(s) 84, 166
Kzo9I GATC 1 cut(s) 313
LpnPI CCDG 3 cut(s) 64, 146, 199
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 5 cut(s) 48, 86, 100, 168, 361
MflI RGATCY 1 cut(s) 313
MluCI AATT 4 cut(s) 206, 223, 272, 298
MlyI GAGTC 2 cut(s) 33, 284
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 4 cut(s) 36, 72, 154, 262
MseI TTAA 2 cut(s) 297, 357
MvnI CGCG 1 cut(s) 116
NdeII GATC 1 cut(s) 313
NruI TCGCGA 1 cut(s) 116
PleI GAGTC 2 cut(s) 33, 284
PpsI GAGTC 2 cut(s) 33, 284
PsuI RGATCY 1 cut(s) 313
RruI TCGCGA 1 cut(s) 116
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 297, 357
Sau3AI GATC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 2 cut(s) 33, 284
SetI ASST 2 cut(s) 223, 364
SgeI CNNG 8 cut(s) 41, 91, 127, 129, 173, 198, 280, 329
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 4 cut(s) 206, 223, 272, 298
TaaI ACNGT 5 cut(s) 46, 92, 106, 128, 174
TasI AATT 4 cut(s) 206, 223, 272, 298
TatI WGTACW 1 cut(s) 119
Tru1I TTAA 2 cut(s) 297, 357
Tru9I TTAA 2 cut(s) 297, 357
TscAI CASTG 3 cut(s) 49, 131, 351
TspDTI ATGAA 6 cut(s) 17, 86, 100, 168, 227, 338
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 3 cut(s) 49, 131, 351
XapI RAATTY 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.