Rroxscaffold_1G00001870

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000321
Physical Location & Seq
Forward (+)
2106748 .. 2108407
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001870.1

Sequence Viewer

Length: 1149 bp
ATGGCTCGAACTACCATCCCAATCACATATGAGACTTGGCCAGCCGTGAAGAATTCACTTAAAGAAATGATATGGAGTATGGTTCAGAAATCATTCATTGTGGATCCAAGAAGCAAGAAAGATGTCTTGAGTAGTGCAGGAAGGAGATGGAAATCATTTAAGAGCACTTTAACTACAAAATATATATTGAAGTATAAAGATCGACGGAGCCTCTTAAAGAAAAAACCTGAAGAGTACGAGTTCATTACTCAACCTCGGTGGGAAGCTTTTGTGAAATCTCGATTAACTCCTGAATTTTTGGAAATTCATGAGGACCACTCAAGGAGACGAGCTTTACATGAGTATGATCATCGAATGTCCAGGAAAGGCTATGCTAATTTGGAAGAGGAACTTAAATCAGAGTTAGGGACTGAAGAAGATATTGATAGAGCCATCTTATGGAAGAAAGGGCGTGTCGATAAAAATGGTAACTATTTGAGTGAGACAACCAAACAACGTGCCGAGAAAATTGATGCTTTAACGAAAGACGTGAGAGAAGGAATTGTGTCTGCTGTTGGTAGGAACGACATTTTGACTCAAGCTTTGGAGACACCGGAGCAATCGTGTCGTGTAAGAGGTGCTGGACAATTTGTTACGCACAAGGTGTACTTTAATACATCTAGATATAAGCCTGCAACCAAGACACAAATGTTAGAACAACAATTGGAATTGATGCAAAACCAAATCAACATGTTTGCTTCATTATTGGATCCCGAGAAGTTGGATCCAGCTAAACTAAGCATGATGCGAGACATGTTCAGATCTAATAATGGATCTGAAAAAGCTAGTTGCTCAGTCGACAAGGAGAAAAATCAGTCCTCTAAGGAGGAAGTATCTAAAGTGGCATCCAAGGAAGAAATTGAGAAAAAAGCTACTGCAAAAAAGGTTCGAAAAGTGGACGATAATCCATCTCCAATTGACAGCAGTAGAGAGAGCAAGAAGGCAAAGCAACAGTACAAAGGGGGATTAATGATGAGAGAGATAGCCGCGTTGGAAGATGACAATGTGATAACATCAACAGAGAAAGCATATATTCCTATTGAGACAATAAATGTTGGAAAAAAGGTATGTATCTTTGTGACTTGTGCATCCTTCTACTTGTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

382

Amino Acids

44.22

Weight (kDa)

9.37

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 87 - 213 3.8e-11 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 438
AccI GTMKAC 1 cut(s) 837
AccII CGCG 1 cut(s) 1028
AciI CCGC 1 cut(s) 1026
AclWI GGATC 7 cut(s) 98, 111, 743, 756, 758, 771, 820
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 3 cut(s) 52, 293, 303
AcuI CTGAAG 2 cut(s) 249, 432
AdeI CACNNNGTG 1 cut(s) 643
AfaI GTAC 3 cut(s) 236, 647, 995
AfiI CCNNNNNNNGG 1 cut(s) 438
AflIII ACRYGT 2 cut(s) 729, 792
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 1 cut(s) 529
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 6 cut(s) 266, 332, 581, 770, 824, 911
AluI AGCT 6 cut(s) 266, 332, 581, 770, 824, 911
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 6 cut(s) 26, 319, 476, 581, 783, 1076
AlwI GGATC 7 cut(s) 98, 111, 743, 756, 758, 771, 820
Ama87I CYCGRG 1 cut(s) 752
AoxI GGCC 1 cut(s) 38
ApoI RAATTY 3 cut(s) 52, 293, 303
ArsI GACNNNNNNTTYG 2 cut(s) 565, 597
AseI ATTAAT 1 cut(s) 1007
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 313
AsuII TTCGAA 1 cut(s) 928
AvaI CYCGRG 1 cut(s) 752
AvaII GGWCC 1 cut(s) 313
BalI TGGCCA 1 cut(s) 40
BamHI GGATCC 3 cut(s) 103, 748, 763
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 4 cut(s) 23, 141, 440, 955
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 1 cut(s) 361
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 6 cut(s) 26, 319, 476, 581, 783, 1076
BfaI CTAG 2 cut(s) 660, 825
BglII AGATCT 1 cut(s) 800
BisI GCNGC 1 cut(s) 1026
BlsI GCNGC 1 cut(s) 1027
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 752
BmgBI CACGTC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 4 cut(s) 105, 209, 750, 765
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 5 cut(s) 502, 702, 774, 893, 1136
BplI GAGNNNNNCTC 2 cut(s) 302, 334
Bpu14I TTCGAA 1 cut(s) 928
BpuEI CTTGAG 3 cut(s) 148, 304, 561
BsaBI GATNNNNATC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 254, 888
BsaWI WCCGGW 1 cut(s) 592
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 151
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 254, 888
BseGI GGATG 3 cut(s) 15, 884, 1127
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 846
BsgI GTGCAG 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 1028
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 752
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 6 cut(s) 26, 319, 476, 581, 783, 1076
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 752
Bsp119I TTCGAA 1 cut(s) 928
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 7 cut(s) 103, 199, 346, 748, 763, 800, 812
BspACI CCGC 1 cut(s) 1026
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 845
BspFNI CGCG 1 cut(s) 1028
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 4 cut(s) 105, 209, 750, 765
BspPI GGATC 7 cut(s) 98, 111, 743, 756, 758, 771, 820
BspT104I TTCGAA 1 cut(s) 928
BssECI CCNNGG 2 cut(s) 254, 888
BssMI GATC 7 cut(s) 103, 199, 346, 748, 763, 800, 812
BssT1I CCWWGG 1 cut(s) 888
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 993
Bst6I CTCTTC 2 cut(s) 225, 378
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 2 cut(s) 42, 672
BstDEI CTNAG 3 cut(s) 776, 832, 861
BstF5I GGATG 3 cut(s) 15, 884, 1127
BstFNI CGCG 1 cut(s) 1028
BstKTI GATC 7 cut(s) 106, 202, 349, 751, 766, 803, 815
BstMAI GTCTC 6 cut(s) 26, 319, 476, 581, 783, 1076
BstMBI GATC 7 cut(s) 103, 199, 346, 748, 763, 800, 812
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 2 cut(s) 733, 796
BstSCI CCNGG 1 cut(s) 359
BstUI CGCG 1 cut(s) 1028
BstX2I RGATCY 5 cut(s) 103, 748, 763, 800, 812
BstYI RGATCY 5 cut(s) 103, 748, 763, 800, 812
BsuRI GGCC 1 cut(s) 40
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 3 cut(s) 15, 884, 1127
Cac8I GCNNGC 2 cut(s) 42, 672
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 3 cut(s) 235, 646, 994
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 5 cut(s) 308, 338, 730, 781, 793
CviQI GTAC 3 cut(s) 235, 646, 994
DdeI CTNAG 3 cut(s) 776, 832, 861
DpnI GATC 7 cut(s) 105, 201, 348, 750, 765, 802, 814
DpnII GATC 7 cut(s) 103, 199, 346, 748, 763, 800, 812
DraIII CACNNNGTG 1 cut(s) 643
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 225, 378
EarI CTCTTC 2 cut(s) 225, 378
Eco130I CCWWGG 1 cut(s) 888
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 249, 432
Eco88I CYCGRG 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 888
ErhI CCWWGG 1 cut(s) 888
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 5 cut(s) 311, 341, 733, 784, 796
FalI AAGNNNNNCTT 4 cut(s) 375, 407, 632, 664
FaqI GGGAC 1 cut(s) 421
FatI CATG 5 cut(s) 307, 337, 729, 780, 792
FauNDI CATATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 1 cut(s) 837
Fnu4HI GCNGC 1 cut(s) 1026
FokI GGATG 3 cut(s) 2, 871, 1114
Fsp4HI GCNGC 1 cut(s) 1026
FspBI CTAG 2 cut(s) 660, 825
GluI GCNGC 1 cut(s) 1026
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 593
Hin1II CATG 5 cut(s) 311, 341, 733, 784, 796
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 2 cut(s) 264, 579
HinfI GANTC 1 cut(s) 574
HpaII CCGG 1 cut(s) 593
Hpy166II GTNNAC 3 cut(s) 646, 838, 937
Hpy188I TCNGA 4 cut(s) 87, 400, 800, 817
Hpy188III TCNNGA 6 cut(s) 127, 279, 290, 308, 660, 752
Hpy8I GTNNAC 3 cut(s) 646, 838, 937
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 4 cut(s) 135, 530, 973, 1141
HpyCH4III ACNGT 1 cut(s) 993
HpyCH4IV ACGT 2 cut(s) 496, 528
HpyCH4V TGCA 5 cut(s) 137, 674, 715, 917, 1127
HpyF3I CTNAG 3 cut(s) 776, 832, 861
HpySE526I ACGT 2 cut(s) 496, 528
Hsp92II CATG 5 cut(s) 311, 341, 733, 784, 796
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 7 cut(s) 103, 199, 346, 748, 763, 800, 812
LmnI GCTCC 2 cut(s) 207, 595
LweI GCATC 5 cut(s) 502, 702, 774, 893, 1136
MaeI CTAG 2 cut(s) 660, 825
MaeII ACGT 2 cut(s) 496, 528
MaeIII GTNAC 3 cut(s) 467, 631, 1117
MalI GATC 7 cut(s) 105, 201, 348, 750, 765, 802, 814
MboI GATC 7 cut(s) 103, 199, 346, 748, 763, 800, 812
MboII GAAGA 8 cut(s) 61, 242, 395, 425, 428, 454, 905, 1046
MfeI CAATTG 2 cut(s) 701, 954
MflI RGATCY 5 cut(s) 103, 748, 763, 800, 812
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 40
MluNI TGGCCA 1 cut(s) 40
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 3 cut(s) 741, 1011, 1075
MnlI CCTC 7 cut(s) 221, 264, 304, 379, 608, 859, 868
Mox20I TGGCCA 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 92
MscI TGGCCA 1 cut(s) 40
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 40
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 2 cut(s) 701, 954
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 1 cut(s) 1028
NdeI CATATG 1 cut(s) 28
NdeII GATC 7 cut(s) 103, 199, 346, 748, 763, 800, 812
NlaIII CATG 5 cut(s) 311, 341, 733, 784, 796
NlaIV GGNNCC 4 cut(s) 105, 209, 750, 765
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 1117
NspI RCATGY 2 cut(s) 733, 796
NspV TTCGAA 1 cut(s) 928
PagI TCATGA 1 cut(s) 307
PciI ACATGT 2 cut(s) 729, 792
PdmI GAANNNNTTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 359
PkrI GCNGC 1 cut(s) 1027
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PscI ACATGT 2 cut(s) 729, 792
PshBI ATTAAT 1 cut(s) 1007
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 4 cut(s) 105, 209, 750, 765
PspPI GGNCC 1 cut(s) 313
PsuI RGATCY 5 cut(s) 103, 748, 763, 800, 812
RsaI GTAC 3 cut(s) 236, 647, 995
RsaNI GTAC 3 cut(s) 235, 646, 994
RseI CAYNNNNRTG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 836
SatI GCNGC 1 cut(s) 1026
Sau3AI GATC 7 cut(s) 103, 199, 346, 748, 763, 800, 812
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 5 cut(s) 502, 702, 774, 893, 1136
SfuI TTCGAA 1 cut(s) 928
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 3 cut(s) 127, 319, 576
SmoI CTYRAG 3 cut(s) 127, 319, 576
SsiI CCGC 1 cut(s) 1026
SspMI CTAG 2 cut(s) 660, 825
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 1 cut(s) 993
TaiI ACGT 2 cut(s) 499, 531
TaqI TCGA 7 cut(s) 7, 202, 280, 352, 456, 837, 928
TatI WGTACW 2 cut(s) 645, 993
TauI GCSGC 1 cut(s) 1028
TseFI GTSAC 1 cut(s) 1117
Tsp45I GTSAC 1 cut(s) 1117
TspDTI ATGAA 4 cut(s) 85, 232, 296, 729
TspGWI ACGGA 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 313
VspI ATTAAT 1 cut(s) 1007
XapI RAATTY 3 cut(s) 52, 293, 303
XbaI TCTAGA 1 cut(s) 659
XceI RCATGY 2 cut(s) 733, 796
XmiI GTMKAC 1 cut(s) 837
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 2 cut(s) 660, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.