Rroxscaffold_174G00435170

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000174
OG0000321
Physical Location & Seq
Forward (+)
152323 .. 153135
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_174G00435170.1

Sequence Viewer

Length: 621 bp
ATGGGAATGGTGATTCCGTTAAATGGGCCAATTCATGGAGTGCCATTAGGGGATGGTAACATACGTGTTTCTATAGAAGTACCTATCAAGGGTGAGGCTCTTCTGCCAGTACCTATTGGCGATGAAATTGTGACTCTTAGACAAGCAATTGAGACTCATGTGGCTTGGCCTCGGAATCTTGTCATAGTGACCAATGAAAAACCCAAGCTAAAGACTCCAAATGCATCATTTAAACCCTTGTTGCCACAAAACTTGTATAAGATACCTCTATACGTACGATTTCTATTACGTTTTGCTAAGAAAATGCGAGAAGAAAAACCATTTAAGGTGGCCATTGATTACGGTGTCTTTGGATATGAACAAGACACTTACCTTAACAAAGATGACATCATTGAATTTTGTTCGATGGAACCACTCTCTACTGTTTGCATGACAATCTACATGAGACATCTATGGTCATCATTAAAGAAAGATCATAAGGATAACTTGTATGGATTTGCGGATCCATCTTCATTCTCTCATGATTCTGGAAAACGAGATGAAAGAGAGTTTGCTTTGTCAATAAGATTAGAGAAAAGCAAGGAACAACAATTAATTTTTGCTCCTTACAATTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

206

Amino Acids

23.58

Weight (kDa)

8.42

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 2 - 63 9.4e-12 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AciI CCGC 1 cut(s) 500
AclWI GGATC 2 cut(s) 497, 510
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 1 cut(s) 395
AfaI GTAC 3 cut(s) 81, 111, 276
AfiI CCNNNNNNNGG 3 cut(s) 23, 35, 89
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 395
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 2 cut(s) 146, 439
AlwI GGATC 2 cut(s) 497, 510
AoxI GGCC 3 cut(s) 26, 167, 330
ApoI RAATTY 1 cut(s) 395
AseI ATTAAT 1 cut(s) 593
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 22, 104
BalI TGGCCA 1 cut(s) 332
BamHI GGATCC 1 cut(s) 502
BccI CCATC 3 cut(s) 47, 400, 514
BcoDI GTCTC 2 cut(s) 146, 439
BfmI CTRYAG 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 411, 504
BmsI GCATC 1 cut(s) 233
BsaAI YACGTR 2 cut(s) 65, 274
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 35, 89
Bse1I ACTGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 3 cut(s) 23, 35, 89
BseNI ACTGG 1 cut(s) 107
BshFI GGCC 3 cut(s) 28, 169, 332
BsiWI CGTACG 1 cut(s) 274
BslI CCNNNNNNNGG 3 cut(s) 23, 35, 89
BsmAI GTCTC 2 cut(s) 146, 439
BsnI GGCC 3 cut(s) 28, 169, 332
Bsp143I GATC 2 cut(s) 472, 502
BspACI CCGC 1 cut(s) 500
BspANI GGCC 3 cut(s) 28, 169, 332
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 411, 504
BspPI GGATC 2 cut(s) 497, 510
BspQI GCTCTTC 1 cut(s) 105
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 472, 502
Bst4CI ACNGT 2 cut(s) 344, 424
Bst6I CTCTTC 1 cut(s) 105
BstBAI YACGTR 2 cut(s) 65, 274
BstDEI CTNAG 2 cut(s) 137, 297
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 2 cut(s) 475, 505
BstMAI GTCTC 2 cut(s) 146, 439
BstMBI GATC 2 cut(s) 472, 502
BstSFI CTRYAG 1 cut(s) 72
BstSNI TACGTA 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 3 cut(s) 28, 169, 332
BtgZI GCGATG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 58
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 3 cut(s) 80, 110, 275
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 5 cut(s) 35, 158, 430, 442, 521
CviJI RGCY 6 cut(s) 28, 98, 164, 169, 208, 332
CviKI_1 RGCY 6 cut(s) 28, 98, 164, 169, 208, 332
CviQI GTAC 3 cut(s) 80, 110, 275
DdeI CTNAG 2 cut(s) 137, 297
DpnI GATC 2 cut(s) 474, 504
DpnII GATC 2 cut(s) 472, 502
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco105I TACGTA 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 226
FaeI CATG 5 cut(s) 38, 161, 433, 445, 524
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 5 cut(s) 34, 157, 429, 441, 520
FokI GGATG 1 cut(s) 65
HaeIII GGCC 3 cut(s) 28, 169, 332
Hin1II CATG 5 cut(s) 38, 161, 433, 445, 524
HinfI GANTC 6 cut(s) 13, 133, 154, 175, 214, 524
HphI GGTGA 2 cut(s) 22, 104
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 2 cut(s) 521, 528
HpyCH4III ACNGT 2 cut(s) 344, 424
HpyCH4IV ACGT 3 cut(s) 64, 273, 289
HpyCH4V TGCA 2 cut(s) 224, 429
HpyF3I CTNAG 2 cut(s) 137, 297
HpySE526I ACGT 3 cut(s) 64, 273, 289
Hsp92II CATG 5 cut(s) 38, 161, 433, 445, 524
Kzo9I GATC 2 cut(s) 472, 502
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 607
LpnPI CCDG 2 cut(s) 120, 513
LweI GCATC 1 cut(s) 233
MaeII ACGT 3 cut(s) 64, 273, 289
MaeIII GTNAC 3 cut(s) 56, 130, 187
MalI GATC 2 cut(s) 474, 504
MboI GATC 2 cut(s) 472, 502
MboII GAAGA 3 cut(s) 92, 323, 501
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 502
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 7 cut(s) 30, 126, 147, 395, 590, 594, 610
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 3 cut(s) 127, 148, 208
MnlI CCTC 3 cut(s) 88, 180, 276
Mox20I TGGCCA 1 cut(s) 332
Mph1103I ATGCAT 1 cut(s) 226
MscI TGGCCA 1 cut(s) 332
MseI TTAA 6 cut(s) 20, 231, 324, 375, 464, 593
Msp20I TGGCCA 1 cut(s) 332
MunI CAATTG 1 cut(s) 147
NdeII GATC 2 cut(s) 472, 502
NlaIII CATG 5 cut(s) 38, 161, 433, 445, 524
NlaIV GGNNCC 2 cut(s) 411, 504
NmuCI GTSAC 2 cut(s) 130, 187
NsiI ATGCAT 1 cut(s) 226
PagI TCATGA 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 13, 175, 524
Pfl23II CGTACG 1 cut(s) 274
PflMI CCANNNNNTGG 1 cut(s) 35
PleI GAGTC 3 cut(s) 127, 148, 208
PpsI GAGTC 3 cut(s) 127, 148, 208
Ppu21I YACGTR 2 cut(s) 65, 274
PshBI ATTAAT 1 cut(s) 593
PspLI CGTACG 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 411, 504
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 3 cut(s) 81, 111, 276
RsaNI GTAC 3 cut(s) 80, 110, 275
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 6 cut(s) 20, 231, 324, 375, 464, 593
Sau3AI GATC 2 cut(s) 472, 502
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 3 cut(s) 127, 148, 208
SetI ASST 9 cut(s) 67, 85, 115, 210, 268, 276, 292, 330, 375
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 72
SnaBI TACGTA 1 cut(s) 274
Sse9I AATT 7 cut(s) 30, 126, 147, 395, 590, 594, 610
SsiI CCGC 1 cut(s) 500
TaaI ACNGT 2 cut(s) 344, 424
TaiI ACGT 3 cut(s) 67, 276, 292
TaqI TCGA 1 cut(s) 404
TasI AATT 7 cut(s) 30, 126, 147, 395, 590, 594, 610
TfiI GAWTC 3 cut(s) 13, 175, 524
Tru1I TTAA 6 cut(s) 20, 231, 324, 375, 464, 593
Tru9I TTAA 6 cut(s) 20, 231, 324, 375, 464, 593
TseFI GTSAC 2 cut(s) 130, 187
Tsp45I GTSAC 2 cut(s) 130, 187
TspDTI ATGAA 6 cut(s) 23, 138, 210, 372, 501, 555
TspGWI ACGGA 1 cut(s) 6
Van91I CCANNNNNTGG 1 cut(s) 35
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.