Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000321

Physical Location & Seq

Genomic Coordinates Forward (+)

51603042 .. 51628260

Gene Structure 25219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCAACTGCGGAGAAGCCGAGGTGGGTGAGGGAGAGGCCGCCTCCTCTGCTCCGTGTCCTTGTACTCTTAATTGGTGCTCGACATCGGAGGGAGACTATTAAGTCTCGGATCGCAAGTTACCGGTTTAATAGTCTTTTGGATGATGAGACATTGTCTAAAGAGGAGGTATCTAGGGTGGAAATGATGAAAGGAAAAGAGAAGAATAAGAAAGCTACTTTAAAAGTCAATGTACGAGATGCTTTAAAGACTTGTACTAAAATTCCTGAAGCAATCAAGAAGCTAAAGAAACATAATAAAGAGGAATCAGCTCTGGAACCTGGAAAAAACAAACAAGATGGCCATATAGAGGTTCCCAAAGACAAGCCACAACATATTGAGAAGTCGTCGTGCGTGGAGTCTAATTCTAGAGTCGATATTGGAGACTTCATTGAGAGAAAGTTGAAGCTGAAGTCAAAGAGCGGAATTGCGAAGGTAATTGGAGCATTGAAGGCTTCAAGCTCGAGCAGAATAGAAGCATTGGAGCAAACGTTTGGAGCAAGAGCATTGCAGATTGGCAAATTGCATATTGCAGATTTTTGGTTCAACCGCTACTTGTCTATTTGCTATTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

205

Amino Acids

23.38

Weight (kDa)

9.93

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000321)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica	Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis	pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis	RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata	RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora	Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii	Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa	Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha	Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana	Rw2G018040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	462
AciI	CCGC	4 cut(s)	11, 41, 462, 589
AclI	AACGTT	1 cut(s)	530
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	288, 470
AfaI	GTAC	3 cut(s)	66, 234, 256
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgeI	ACCGGT	1 cut(s)	123
AgsI	TTSAA	4 cut(s)	445, 490, 498, 586
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	5 cut(s)	215, 283, 311, 448, 501
AluI	AGCT	5 cut(s)	215, 283, 311, 448, 501
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	4 cut(s)	89, 111, 143, 417
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	38, 340
ApoI	RAATTY	1 cut(s)	261
AsiGI	ACCGGT	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	82
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	4 cut(s)	89, 111, 143, 417
BfaI	CTAG	2 cut(s)	174, 408
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	321
BmeT110I	CYCGRG	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	318, 354
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	545
BseRI	GAGGAG	2 cut(s)	36, 179
BshFI	GGCC	2 cut(s)	40, 342
BshTI	ACCGGT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	4 cut(s)	89, 111, 143, 417
BsnI	GGCC	2 cut(s)	40, 342
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	4 cut(s)	11, 41, 462, 589
BspANI	GGCC	2 cut(s)	40, 342
BspLI	GGNNCC	2 cut(s)	318, 354
BspPI	GGATC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	4 cut(s)	89, 111, 143, 417
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 491
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	40, 342
BtsCI	GGATG	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	65, 233, 255
CspAI	ACCGGT	1 cut(s)	123
CviQI	GTAC	3 cut(s)	65, 233, 255
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DraI	TTTAAA	2 cut(s)	222, 246
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	340
Eco57I	CTGAAG	2 cut(s)	288, 470
Eco88I	CYCGRG	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	319
FaiI	YATR	5 cut(s)	294, 345, 347, 375, 567
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	174, 408
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	40, 342
HapII	CCGG	1 cut(s)	124
HinfI	GANTC	3 cut(s)	305, 398, 411
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	90, 111
Hpy188III	TCNNGA	4 cut(s)	266, 277, 314, 408
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	466, 484
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	3 cut(s)	550, 565, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 491
HpySE526I	ACGT	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	4 cut(s)	57, 482, 523, 536
LpnPI	CCDG	5 cut(s)	137, 279, 299, 306, 333
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	174, 408
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	113
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	6 cut(s)	72, 261, 403, 465, 477, 560
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	2 cut(s)	407, 420
Mox20I	TGGCCA	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	6 cut(s)	71, 102, 129, 221, 245, 616
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	49, 491
NdeII	GATC	1 cut(s)	111
NlaIV	GGNNCC	2 cut(s)	318, 354
NmeAIII	GCCGAG	1 cut(s)	45
PaeR7I	CTCGAG	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	305
PflFI	GACNNNGTC	1 cut(s)	154
PinAI	ACCGGT	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	2 cut(s)	406, 419
PpsI	GAGTC	2 cut(s)	406, 419
Psp1406I	AACGTT	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	318, 354
PspXI	VCTCGAGB	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	3 cut(s)	66, 234, 256
RsaNI	GTAC	3 cut(s)	65, 233, 255
SaqAI	TTAA	6 cut(s)	71, 102, 129, 221, 245, 616
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	111
SchI	GAGTC	2 cut(s)	407, 420
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	6 cut(s)	72, 261, 403, 465, 477, 560
SsiI	CCGC	4 cut(s)	11, 41, 462, 589
SspMI	CTAG	2 cut(s)	174, 408
StyD4I	CCNGG	1 cut(s)	319
TaiI	ACGT	1 cut(s)	533
TaqI	TCGA	3 cut(s)	82, 414, 503
TasI	AATT	6 cut(s)	72, 261, 403, 465, 477, 560
TatI	WGTACW	2 cut(s)	64, 254
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	6 cut(s)	71, 102, 129, 221, 245, 616
Tru9I	TTAA	6 cut(s)	71, 102, 129, 221, 245, 616
TspDTI	ATGAA	2 cut(s)	203, 418
TspGWI	ACGGA	1 cut(s)	44
Tth111I	GACNNNGTC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	261
XbaI	TCTAGA	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	502
XspI	CTAG	2 cut(s)	174, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.