RLG00000013674

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000321
Physical Location & Seq
Forward (+)
35525779 .. 35549080
23302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013674

Sequence Viewer

Length: 726 bp
ATGAGAAGCATGATTCCAAATATTACCAACAGCAAGCAAGTAAGAGATAAGAAACTCATGAGGACCACTCAAGCAGACGAGCTTTGCATGAGTATGATCATCGAATGTCCAAGAAAGGCAAAACAACAGTACAAAGGGGGACTAATAATGAGAGAGATAGGAGAATTGGAAGATGACAATGTGATAACATCAATAGAGAAAGCATATATTCCTATTGAGACAACAAATGTTGTAAAAAAGGGAACAAAATGCAAGCTAGCAGTAGACACCAAAGATAACATCAACTCAATGAGCACTCGAAAGTCTTTGAGTAAAACACCATGCAGACAAGCAACATACAAGATGCCTGTATCTGTGCATCTTGTACTATGTTTGGCAAGAACAATGGATGAATCTATACCAGTGTCGGTCCCCATGGAAGATGGTGTGTTTGGCAATGATCACAATACATTCATAATCAATAACGACATTATCCAGTTTTGTTTGATGCAGCCAATATCCATCATTTGCATTTCTATCTACATGAGACACCTCTGGTCATTATTGAAAATGAAGGATGAGGATCATTTGTTTACATTTGTGGATCCTGGCCAATCTCTAATGAAGTTGGAAAGGAATCATTGGTTGTTAGCTGCCATTAACCTGTTTACTGCATTGGTGTATTACTTCGACCCATTGAGTAACATTAACATCAATCCAGGAATGAAGAACATCGTAGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

242

Amino Acids

27.56

Weight (kDa)

8.41

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 264
AclWI GGATC 3 cut(s) 570, 578, 591
AcoI YGGCCR 1 cut(s) 589
AfaI GTAC 2 cut(s) 131, 366
AgsI TTSAA 1 cut(s) 547
AjnI CCWGG 2 cut(s) 586, 697
AluBI AGCT 4 cut(s) 82, 256, 632, 721
AluI AGCT 4 cut(s) 82, 256, 632, 721
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 212, 520
AlwI GGATC 3 cut(s) 570, 578, 591
AoxI GGCC 1 cut(s) 589
ApeKI GCWGC 2 cut(s) 490, 632
AspS9I GGNCC 2 cut(s) 63, 409
AsuNHI GCTAGC 1 cut(s) 256
AvaII GGWCC 2 cut(s) 63, 409
BalI TGGCCA 1 cut(s) 591
BamHI GGATCC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 502, 619
BccI CCATC 2 cut(s) 416, 509
BciT130I CCWGG 2 cut(s) 588, 699
BclI TGATCA 2 cut(s) 96, 439
BcoDI GTCTC 2 cut(s) 212, 520
BfaI CTAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 491, 633
BlsI GCNGC 2 cut(s) 492, 634
Bme1390I CCNGG 2 cut(s) 588, 699
Bme18I GGWCC 2 cut(s) 63, 409
BmgT120I GGNCC 2 cut(s) 63, 409
BmiI GGNNCC 2 cut(s) 411, 585
BmrFI CCNGG 2 cut(s) 588, 699
BmsI GCATC 3 cut(s) 333, 367, 477
BmtI GCTAGC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BpuEI CTTGAG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 414
Bse1I ACTGG 2 cut(s) 401, 475
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 2 cut(s) 588, 699
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 2 cut(s) 394, 562
BseJI GATNNNNATC 1 cut(s) 561
BseMI GCAATG 1 cut(s) 442
BseNI ACTGG 2 cut(s) 401, 475
BseXI GCAGC 2 cut(s) 502, 619
BshFI GGCC 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 296
BslFI GGGAC 2 cut(s) 153, 395
BsmAI GTCTC 2 cut(s) 212, 520
BsmFI GGGAC 2 cut(s) 153, 395
BsnI GGCC 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 4 cut(s) 96, 439, 562, 583
Bsp19I CCATGG 1 cut(s) 414
BspANI GGCC 1 cut(s) 591
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 411, 585
BspOI GCTAGC 1 cut(s) 260
BspPI GGATC 3 cut(s) 570, 578, 591
BsrDI GCAATG 1 cut(s) 442
BsrI ACTGG 2 cut(s) 401, 475
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 4 cut(s) 96, 439, 562, 583
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 2 cut(s) 588, 699
Bst4CI ACNGT 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 35, 254, 258
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 394, 562
BstKTI GATC 4 cut(s) 99, 442, 565, 586
BstMAI GTCTC 2 cut(s) 212, 520
BstMBI GATC 4 cut(s) 96, 439, 562, 583
BstNI CCWGG 2 cut(s) 588, 699
BstSCI CCNGG 2 cut(s) 586, 697
BstV1I GCAGC 2 cut(s) 502, 619
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 394, 562
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 35, 254, 258
CciI TCATGA 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 63, 409
Csp6I GTAC 2 cut(s) 130, 365
CviAII CATG 6 cut(s) 10, 58, 88, 321, 415, 523
CviJI RGCY 6 cut(s) 82, 256, 493, 591, 632, 721
CviKI_1 RGCY 6 cut(s) 82, 256, 493, 591, 632, 721
CviQI GTAC 2 cut(s) 130, 365
DpnI GATC 4 cut(s) 98, 441, 564, 585
DpnII GATC 4 cut(s) 96, 439, 562, 583
EaeI YGGCCR 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 63, 409
EcoRII CCWGG 2 cut(s) 586, 697
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 6 cut(s) 13, 61, 91, 324, 418, 526
FaqI GGGAC 2 cut(s) 153, 395
FatI CATG 6 cut(s) 9, 57, 87, 320, 414, 522
FbaI TGATCA 2 cut(s) 96, 439
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 491, 633
FokI GGATG 2 cut(s) 401, 569
Fsp4HI GCNGC 2 cut(s) 491, 633
FspBI CTAG 1 cut(s) 257
GluI GCNGC 2 cut(s) 491, 633
HaeIII GGCC 1 cut(s) 591
Hin1II CATG 6 cut(s) 13, 61, 91, 324, 418, 526
HinfI GANTC 3 cut(s) 13, 392, 616
Hpy166II GTNNAC 3 cut(s) 265, 573, 648
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 3 cut(s) 265, 573, 648
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 7 cut(s) 87, 252, 324, 358, 490, 510, 653
Hsp92II CATG 6 cut(s) 13, 61, 91, 324, 418, 526
Ksp22I TGATCA 2 cut(s) 96, 439
Kzo9I GATC 4 cut(s) 96, 439, 562, 583
LpnPI CCDG 9 cut(s) 360, 414, 488, 520, 573, 600, 656, 684, 711
Lsp1109I GCAGC 2 cut(s) 502, 619
LweI GCATC 3 cut(s) 333, 367, 477
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 680
MalI GATC 4 cut(s) 98, 441, 564, 585
MboI GATC 4 cut(s) 96, 439, 562, 583
MboII GAAGA 3 cut(s) 182, 431, 718
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 1 cut(s) 164
MluNI TGGCCA 1 cut(s) 591
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 3 cut(s) 54, 542, 553
Mox20I TGGCCA 1 cut(s) 591
MscI TGGCCA 1 cut(s) 591
MseI TTAA 2 cut(s) 639, 687
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 591
MspR9I CCNGG 2 cut(s) 588, 699
MvaI CCWGG 2 cut(s) 588, 699
NcoI CCATGG 1 cut(s) 414
NdeII GATC 4 cut(s) 96, 439, 562, 583
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 6 cut(s) 13, 61, 91, 324, 418, 526
NlaIV GGNNCC 2 cut(s) 411, 585
PagI TCATGA 1 cut(s) 57
PfeI GAWTC 3 cut(s) 13, 392, 616
PfoI TCCNGGA 1 cut(s) 697
PkrI GCNGC 2 cut(s) 492, 634
Psp6I CCWGG 2 cut(s) 586, 697
PspGI CCWGG 2 cut(s) 586, 697
PspN4I GGNNCC 2 cut(s) 411, 585
PspPI GGNCC 2 cut(s) 63, 409
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 2 cut(s) 131, 366
RsaNI GTAC 2 cut(s) 130, 365
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 2 cut(s) 639, 687
SatI GCNGC 2 cut(s) 491, 633
Sau3AI GATC 4 cut(s) 96, 439, 562, 583
Sau96I GGNCC 2 cut(s) 63, 409
ScrFI CCNGG 2 cut(s) 588, 699
SduI GDGCHC 1 cut(s) 296
SetI ASST 6 cut(s) 84, 258, 534, 634, 645, 723
SfaNI GCATC 3 cut(s) 333, 367, 477
SinI GGWCC 2 cut(s) 63, 409
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 1 cut(s) 164
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 586, 697
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 102, 298, 669
TaqII GACCGA 1 cut(s) 397
TasI AATT 1 cut(s) 164
TatI WGTACW 2 cut(s) 129, 364
TfiI GAWTC 3 cut(s) 13, 392, 616
Tru1I TTAA 2 cut(s) 639, 687
Tru9I TTAA 2 cut(s) 639, 687
TscAI CASTG 1 cut(s) 408
TseI GCWGC 2 cut(s) 490, 632
TspDTI ATGAA 5 cut(s) 405, 442, 566, 617, 719
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 2 cut(s) 63, 409
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.