Rorug06G0045600

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000321
Physical Location & Seq
Reverse (-)
5981092 .. 5983000
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0045600.1

Sequence Viewer

Length: 639 bp
ATGAATGTGTTGGCCTCGGAATGCAGTAGTGGTTGTGAGTCCGGTTGGACTCTGTACTTAGAGCAATCTTTTGTTTCTCAACATCCGAGTGGTTCACATAGAGGTAATAGTAATGGTTTTTGTGAGGAGTATAAGGAAAAAAGAATTAGCTATAGTAATAAGGATGAAGAAGAAGAAGAAGAAGAAGAAGACCAGTCAATGGTTTCTGATGCTTCTTCTGGGCCTCCTCATTTCAATGAAGATGAGGTTTACTTTGATGAAAACAATAATGGGTATTTTTGTCCTCCATCCAAAGATGTTAGAACATTGAAGTTTGGAGGTAAAAAGCAGAAGATCAAAGAAAAGGGTAGATGTGGTGTTCAAGATCAACAGCAACAGCAACCATCTTTTCTAGATGACACTGCTAGCTCCCCTTTTTTCAACATTTCCAAGAACAATTTCATGGTGTCCAATAATCAGGCTTCAGGTGATAGTGTCTTGGATTTCTCACAAGGTTTCTCATCAACTCATTTTCAGGGGAGATCTGCATACCAAGACCACTATGGTTTCTTACAATCTACTCTACCTGGAAATCCACTTCAGGATCAAAACCAGTGGTTTGAAGGGAATGAGATAACAAGATCTTCATATCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

212

Amino Acids

24.0

Weight (kDa)

4.66

Isoelectric Point (pI)

66.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AclWI GGATC 1 cut(s) 591
AcuI CTGAAG 2 cut(s) 447, 563
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 5 cut(s) 235, 310, 362, 421, 602
AjnI CCWGG 1 cut(s) 565
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 2 cut(s) 150, 408
AluI AGCT 2 cut(s) 150, 408
AlwI GGATC 1 cut(s) 591
AoxI GGCC 2 cut(s) 12, 221
Asp700I GAANNNNTTC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 479
AsuNHI GCTAGC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 195
BccI CCATC 2 cut(s) 295, 391
BciT130I CCWGG 1 cut(s) 567
BfaI CTAG 2 cut(s) 392, 405
BfmI CTRYAG 1 cut(s) 151
BglII AGATCT 2 cut(s) 521, 620
Bme1390I CCNGG 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 199
BmtI GCTAGC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 193, 592
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 3 cut(s) 82, 169, 287
BseLI CCNNNNNNNGG 1 cut(s) 199
BseNI ACTGG 2 cut(s) 193, 592
BseRI GAGGAG 2 cut(s) 140, 216
BshFI GGCC 2 cut(s) 14, 223
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 199
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 14, 223
Bsp143I GATC 5 cut(s) 333, 364, 521, 583, 620
BspANI GGCC 2 cut(s) 14, 223
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 591
BsrI ACTGG 2 cut(s) 193, 592
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 5 cut(s) 333, 364, 521, 583, 620
Bst2UI CCWGG 1 cut(s) 567
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 3 cut(s) 82, 169, 287
BstKTI GATC 5 cut(s) 336, 367, 524, 586, 623
BstMBI GATC 5 cut(s) 333, 364, 521, 583, 620
BstNI CCWGG 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 2 cut(s) 521, 620
BstYI RGATCY 2 cut(s) 521, 620
BsuRI GGCC 2 cut(s) 14, 223
BtsCI GGATG 3 cut(s) 82, 169, 287
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 399, 599
Cac8I GCNNGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 55
CspCI CAANNNNNGTGG 2 cut(s) 575, 610
CviAII CATG 1 cut(s) 442
CviJI RGCY 5 cut(s) 14, 150, 223, 408, 461
CviKI_1 RGCY 5 cut(s) 14, 150, 223, 408, 461
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 58
DpnI GATC 5 cut(s) 335, 366, 523, 585, 622
DpnII GATC 5 cut(s) 333, 364, 521, 583, 620
Eco57I CTGAAG 2 cut(s) 447, 563
EcoRII CCWGG 1 cut(s) 565
FaeI CATG 1 cut(s) 445
FaiI YATR 7 cut(s) 99, 132, 153, 443, 529, 543, 628
FatI CATG 1 cut(s) 441
FokI GGATG 3 cut(s) 69, 176, 274
FspBI CTAG 2 cut(s) 392, 405
HaeIII GGCC 2 cut(s) 14, 223
HapII CCGG 1 cut(s) 42
Hin1II CATG 1 cut(s) 445
HinfI GANTC 2 cut(s) 38, 49
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 2 cut(s) 95, 250
Hpy188I TCNGA 3 cut(s) 19, 87, 208
Hpy188III TCNNGA 3 cut(s) 362, 392, 581
Hpy8I GTNNAC 2 cut(s) 95, 250
HpyAV CCTTC 1 cut(s) 596
HpyCH4V TGCA 2 cut(s) 24, 527
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 1 cut(s) 445
Kzo9I GATC 5 cut(s) 333, 364, 521, 583, 620
LmnI GCTCC 1 cut(s) 413
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 392, 405
MalI GATC 5 cut(s) 335, 366, 523, 585, 622
MboI GATC 5 cut(s) 333, 364, 521, 583, 620
MflI RGATCY 2 cut(s) 521, 620
MluCI AATT 2 cut(s) 144, 436
MlyI GAGTC 2 cut(s) 43, 47
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 8 cut(s) 25, 95, 118, 234, 237, 238, 294, 311
MroXI GAANNNNTTC 1 cut(s) 437
MslI CAYNNNNRTG 2 cut(s) 87, 234
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 567
NdeII GATC 5 cut(s) 333, 364, 521, 583, 620
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 1 cut(s) 445
PctI GAATGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 199
PleI GAGTC 2 cut(s) 43, 46
PpsI GAGTC 2 cut(s) 43, 46
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 2 cut(s) 521, 620
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 87, 234
Sau3AI GATC 5 cut(s) 333, 364, 521, 583, 620
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 2 cut(s) 43, 47
ScrFI CCNGG 1 cut(s) 567
SetI ASST 8 cut(s) 106, 152, 249, 322, 410, 469, 496, 568
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 87, 234
Sse9I AATT 2 cut(s) 144, 436
SspMI CTAG 2 cut(s) 392, 405
StyD4I CCNGG 1 cut(s) 565
TasI AATT 2 cut(s) 144, 436
TatI WGTACW 1 cut(s) 54
TscAI CASTG 2 cut(s) 406, 599
TspDTI ATGAA 6 cut(s) 17, 180, 252, 273, 430, 615
TspRI CASTG 2 cut(s) 406, 599
Van91I CCANNNNNTGG 1 cut(s) 199
XbaI TCTAGA 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 2 cut(s) 392, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.