Rh1DG288100

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000321
Physical Location & Seq
Reverse (-)
51083145 .. 51083889
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG288100.1

Sequence Viewer

Length: 522 bp
ATGGATTCAGAAGAAGAAAATCATGCCACTGAAGATGACTTGCCATCTGACGAGAAGAAGGGAAGAGGTCCAACTCTCATGTCCGATATTATTCATGGTAGGAGTAAGGGGGCTCGAATGGAAGTGACATATAACAAAAAGAGGCAACCAATTGGTCTTGGAGGGAAGAGGCTAGCTACTTTTATTGGGGTAATGGCTCGAACTACTATCCCAATCACATATGAGACTTGGCCAGCCGTGAAGAATTCACTTAAAGAAATGATATGGAGTATGGTTCAGAAATCATTCATTGTGGATCCAAGAAGCAAGAAAGATGTCTTAAGTAGTGCAGGAAGGAAATGGAAATCATTCAAGAGCACTTTAACTACAAAATATATATTGAAGTATAAAGATCGGCGCAGCCTCCTAAAGAAAAAACCTGAAGAATATGAGTTTATTACTCAACCTGAGTGGGAAGCTTTTGTGAAGTCTCGATTAACTCCAGAATTTTTGGAAATTCATGAGGACCACTCAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

173

Amino Acids

20.15

Weight (kDa)

9.64

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 290, 303
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 3 cut(s) 244, 485, 495
AcuI CTGAAG 2 cut(s) 51, 441
AflII CTTAAG 1 cut(s) 319
AgsI TTSAA 2 cut(s) 352, 382
AluBI AGCT 2 cut(s) 176, 458
AluI AGCT 2 cut(s) 176, 458
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 2 cut(s) 218, 474
AlwI GGATC 2 cut(s) 290, 303
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 3 cut(s) 244, 485, 495
Asp700I GAANNNNTTC 2 cut(s) 284, 347
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 2 cut(s) 68, 505
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 2 cut(s) 68, 505
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 411
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 218, 474
BfaI CTAG 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 319
BisI GCNGC 1 cut(s) 400
BlsI GCNGC 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 68, 505
BmgT120I GGNCC 2 cut(s) 68, 505
BmiI GGNNCC 1 cut(s) 297
BmtI GCTAGC 1 cut(s) 176
BplI GAGNNNNNCTC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 496
BseMII CTCAG 1 cut(s) 438
BseXI GCAGC 1 cut(s) 411
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 359
BsmAI GTCTC 2 cut(s) 218, 474
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 115, 359
Bsp143I GATC 2 cut(s) 295, 391
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 439
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 297
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 2 cut(s) 290, 303
BspTI CTTAAG 1 cut(s) 319
BssMI GATC 2 cut(s) 295, 391
Bst6I CTCTTC 2 cut(s) 58, 161
BstAFI CTTAAG 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 174, 234
BstDEI CTNAG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 2 cut(s) 298, 394
BstMAI GTCTC 2 cut(s) 218, 474
BstMBI GATC 2 cut(s) 295, 391
BstV1I GCAGC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 174, 234
CciI TCATGA 1 cut(s) 499
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 68, 505
CspCI CAANNNNNGTGG 2 cut(s) 431, 466
CviAII CATG 4 cut(s) 23, 79, 95, 500
CviJI RGCY 8 cut(s) 113, 172, 176, 197, 232, 236, 402, 458
CviKI_1 RGCY 8 cut(s) 113, 172, 176, 197, 232, 236, 402, 458
DdeI CTNAG 1 cut(s) 447
DpnI GATC 2 cut(s) 297, 393
DpnII GATC 2 cut(s) 295, 391
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 58, 161
EarI CTCTTC 2 cut(s) 58, 161
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 68, 505
Eco57I CTGAAG 2 cut(s) 51, 441
EcoRI GAATTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 4 cut(s) 26, 82, 98, 503
FatI CATG 4 cut(s) 22, 78, 94, 499
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 400
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 400
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 398
GluI GCNGC 1 cut(s) 400
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 1 cut(s) 232
HhaI GCGC 1 cut(s) 399
Hin1II CATG 4 cut(s) 26, 82, 98, 503
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 1 cut(s) 5
Hpy188I TCNGA 4 cut(s) 10, 49, 85, 279
Hpy188III TCNNGA 4 cut(s) 352, 471, 482, 500
HpyAV CCTTC 2 cut(s) 52, 327
HpyCH4V TGCA 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 4 cut(s) 26, 82, 98, 503
HspAI GCGC 1 cut(s) 397
Kzo9I GATC 2 cut(s) 295, 391
LpnPI CCDG 5 cut(s) 246, 315, 432, 459, 495
Lsp1109I GCAGC 1 cut(s) 411
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 297, 393
MboI GATC 2 cut(s) 295, 391
MboII GAAGA 8 cut(s) 23, 26, 44, 67, 75, 178, 253, 434
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 2 cut(s) 115, 359
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 4 cut(s) 150, 244, 485, 495
MluNI TGGCCA 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 6 cut(s) 59, 135, 155, 162, 413, 496
Mox20I TGGCCA 1 cut(s) 232
MroXI GAANNNNTTC 2 cut(s) 284, 347
MscI TGGCCA 1 cut(s) 232
MseI TTAA 4 cut(s) 252, 320, 362, 476
Msp20I TGGCCA 1 cut(s) 232
MspCI CTTAAG 1 cut(s) 319
MunI CAATTG 1 cut(s) 150
NdeI CATATG 1 cut(s) 220
NdeII GATC 2 cut(s) 295, 391
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 4 cut(s) 26, 82, 98, 503
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 124
PagI TCATGA 1 cut(s) 499
PdmI GAANNNNTTC 2 cut(s) 284, 347
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 2 cut(s) 68, 505
PsuI RGATCY 1 cut(s) 295
SaqAI TTAA 4 cut(s) 252, 320, 362, 476
SatI GCNGC 1 cut(s) 400
Sau3AI GATC 2 cut(s) 295, 391
Sau96I GGNCC 2 cut(s) 68, 505
SduI GDGCHC 2 cut(s) 115, 359
SetI ASST 5 cut(s) 70, 178, 421, 448, 460
SinI GGWCC 2 cut(s) 68, 505
SmlI CTYRAG 2 cut(s) 319, 511
SmoI CTYRAG 2 cut(s) 319, 511
Sse9I AATT 4 cut(s) 150, 244, 485, 495
SspMI CTAG 1 cut(s) 173
TaqI TCGA 3 cut(s) 115, 199, 472
TasI AATT 4 cut(s) 150, 244, 485, 495
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 4 cut(s) 252, 320, 362, 476
Tru9I TTAA 4 cut(s) 252, 320, 362, 476
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 399
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 83, 277, 488
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 68, 505
XapI RAATTY 3 cut(s) 244, 485, 495
XmnI GAANNNNTTC 2 cut(s) 284, 347
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.