Rh2AG232500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000321
Physical Location & Seq
Reverse (-)
25032289 .. 25033366
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG232500.1

Sequence Viewer

Length: 519 bp
ATGCTAAATGTTTCACCTCCTCAGTTGTTGCGAGAAAGTGTCATGGATGAGGTCAGAAAGATGATAGAGCAGCAAAGGTTATGGTTTGATGCCAAGATTTCTTTGTTAGAGGCGAAGATCAGTGGTGATTGCCCAGCTGCAAGTATCACACTTCCAACTCCTCTGCTTGCCAAGCCTTCAAAGAAGGGCAGGTGTTCTGGGAAGACAAACGTTGAGGATAATGAAATTGATTCGGAAGCTTTCTCATTTGTGGGCAGAAGAGAATTCATGAAGGAACGTGGAAATTCTTCTATAAAACCTCGAGATTTACCCAATCAAGATGTGATCCTGCCCAAGTCCCTCAAGCTCCTATACCGTTATGCTGAGCGTGCCATGACGGATGGTGAGCCTATCAGTGTCTTTATGGAAGAAGCCGTATTTGGTATTGCCAAGACTCTCAACATTTTCAAAGAAGATGTTATGCAATTTATGGAAATGAAGGAAATCCCCCCTAGGTGCATAACAGTGTACATGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

172

Amino Acids

19.65

Weight (kDa)

7.64

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 180
AclI AACGTT 1 cut(s) 210
AclWI GGATC 1 cut(s) 319
AcsI RAATTY 2 cut(s) 263, 283
AfaI GTAC 1 cut(s) 509
AgsI TTSAA 2 cut(s) 180, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AluBI AGCT 3 cut(s) 137, 239, 346
AluI AGCT 3 cut(s) 137, 239, 346
AlwI GGATC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 70, 137
ApoI RAATTY 2 cut(s) 263, 283
Asp700I GAANNNNTTC 1 cut(s) 286
AspA2I CCTAGG 1 cut(s) 491
AsuHPI GGTGA 3 cut(s) 6, 137, 395
AvaI CYCGRG 1 cut(s) 300
AvrII CCTAGG 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 82, 124
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 398
BfaI CTAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 71, 138
BlnI CCTAGG 1 cut(s) 491
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 2 cut(s) 72, 139
BmeT110I CYCGRG 1 cut(s) 300
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 491
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 2 cut(s) 52, 385
BseMII CTCAG 2 cut(s) 35, 354
BseRI GAGGAG 2 cut(s) 9, 150
BseXI GCAGC 2 cut(s) 82, 124
BseYI CCCAGC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 300
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 2 cut(s) 117, 324
Bsp1720I GCTNAGC 1 cut(s) 363
BspCNI CTCAG 2 cut(s) 34, 355
BspHI TCATGA 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 507
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 2 cut(s) 117, 324
BssT1I CCWWGG 1 cut(s) 491
Bst4CI ACNGT 2 cut(s) 356, 505
Bst6I CTCTTC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 168, 369
BstDEI CTNAG 2 cut(s) 21, 363
BstF5I GGATG 2 cut(s) 52, 385
BstKTI GATC 2 cut(s) 120, 327
BstMBI GATC 2 cut(s) 117, 324
BstMWI GCNNNNNNNGC 2 cut(s) 172, 368
BstV1I GCAGC 2 cut(s) 82, 124
BstV2I GAAGAC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 52, 385
BtsIMutI CAGTG 3 cut(s) 127, 400, 510
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 168, 369
CciI TCATGA 1 cut(s) 267
Csp6I GTAC 1 cut(s) 508
CviAII CATG 4 cut(s) 43, 268, 373, 511
CviJI RGCY 6 cut(s) 137, 175, 239, 346, 388, 413
CviKI_1 RGCY 6 cut(s) 137, 175, 239, 346, 388, 413
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 2 cut(s) 21, 363
DpnI GATC 2 cut(s) 119, 326
DpnII GATC 2 cut(s) 117, 324
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 491
FaeI CATG 4 cut(s) 46, 271, 376, 514
FaqI GGGAC 1 cut(s) 322
FatI CATG 4 cut(s) 42, 267, 372, 510
Fnu4HI GCNGC 2 cut(s) 71, 138
FokI GGATG 2 cut(s) 59, 392
Fsp4HI GCNGC 2 cut(s) 71, 138
FspBI CTAG 1 cut(s) 492
GluI GCNGC 2 cut(s) 71, 138
GsaI CCCAGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 46, 271, 376, 514
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 2 cut(s) 230, 433
HphI GGTGA 3 cut(s) 6, 137, 395
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 2 cut(s) 56, 235
Hpy188III TCNNGA 3 cut(s) 268, 302, 317
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 4 cut(s) 178, 186, 265, 472
HpyCH4III ACNGT 2 cut(s) 356, 505
HpyCH4IV ACGT 2 cut(s) 210, 277
HpyCH4V TGCA 3 cut(s) 140, 463, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 368
HpyF3I CTNAG 2 cut(s) 21, 363
HpySE526I ACGT 2 cut(s) 210, 277
Hsp92II CATG 4 cut(s) 46, 271, 376, 514
Kzo9I GATC 2 cut(s) 117, 324
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 4 cut(s) 147, 175, 183, 341
Lsp1109I GCAGC 2 cut(s) 82, 124
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 210, 277
MalI GATC 2 cut(s) 119, 326
MboI GATC 2 cut(s) 117, 324
MboII GAAGA 6 cut(s) 127, 214, 270, 279, 419, 464
MluCI AATT 4 cut(s) 225, 263, 283, 464
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 9 cut(s) 27, 30, 43, 103, 171, 208, 309, 350, 507
MroXI GAANNNNTTC 1 cut(s) 286
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 172, 368
NdeII GATC 2 cut(s) 117, 324
NlaIII CATG 4 cut(s) 46, 271, 376, 514
PaeR7I CTCGAG 1 cut(s) 300
PagI TCATGA 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 72, 139
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp1406I AACGTT 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 503
SatI GCNGC 2 cut(s) 71, 138
Sau3AI GATC 2 cut(s) 117, 324
SchI GAGTC 1 cut(s) 427
SfaNI GCATC 1 cut(s) 79
Sfr274I CTCGAG 1 cut(s) 300
SlaI CTCGAG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 2 cut(s) 300, 341
SmoI CTYRAG 2 cut(s) 300, 341
Sse9I AATT 4 cut(s) 225, 263, 283, 464
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 2 cut(s) 356, 505
TaiI ACGT 2 cut(s) 213, 280
TaqI TCGA 1 cut(s) 301
TasI AATT 4 cut(s) 225, 263, 283, 464
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 3 cut(s) 127, 400, 510
TseI GCWGC 2 cut(s) 70, 137
TspDTI ATGAA 4 cut(s) 237, 256, 284, 491
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 3 cut(s) 127, 400, 510
XapI RAATTY 2 cut(s) 263, 283
XhoI CTCGAG 1 cut(s) 300
XmaJI CCTAGG 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 286
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.