RchiOBHm_Chr7g0240601

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000321
Physical Location & Seq
Forward (+)
66565541 .. 66568922
3382 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21563

Sequence Viewer

Length: 1794 bp
ATGTCCAGGAAAGGCTATGCTAATTTGGAAGAGGAACTTAAATCTGAGTTAGGGACTGAAGAAGATATTGATAGAGCCATCTTATGGAAGAAAGGGCGTGTCGATAAAAAGGGTAACTATTTGAGTGAGACAACCAAACAACGTGCTGAGAAAATTGATGCTTTAACGAAAGACGTGAAAGAAGGAATTGTGTCTGCTGTTGGTAGGAATGACATTTTGACTCAAGCTTTGGAGACACCGGAGCAATCAGGCCGTGTAAGAGGTGCTGGACAATTTGTTACGCACAAGGTGTACTTTAATACATCTAGATATAAGCCTGCAACCAAGACACAAATGTTGGAACAACAATTGGAATTGATGCAAAACCAGATCAACATGTTTGCTTCATTATTGGATCCCGAGAAGTTGGATCCAGCTAAACTAAACATGATGCGAGACATGTTCAGATCTAATAATGGATCTGAAAAAGCTAGTTGCTCAGTCGACAAGGAGAAAAATCAGTCCTCTAAGGAGGAAATATCTAAGGTGGCATCCAAGGAAGAAATTGAGAAAAAAGCTACTGCAAAAAAGGTTCGGAAAGTGGACGACAATCCATCTCCAATTGATAGCAGTAGAGAGAGCAAGAAGGCAAAGCAACAATACAAAGGGGGACTAATGATGAGAGAGATAACCGCGTTGGAAGTTGACAATGTGATAACATCAACAGAGAAAGCATATATTCCTATTGAGACAATAAATGTTGGAAAAAAGGGAAAAAAATGTAAGCTGGCAGTAGACACGAAAGATAACATTGTTGCAATGGGAACTGTAATAATGTTGGATGGACCGATACATGGAGTGCCATTAGGAGCAGAAAATGTACGTACCTCAGTTGATGTGCCTATCAAGGAAGATGCTTATCTTCCAATCCCAAATGTATCAGGTGACATATTTACAGTAAAGCAAGCCATTGGTACTCATGTTGCTTGGCCTCGACATCTTGTCTTAATGTCACATGAAGAGAACTCAATGAACACTCAGAAATGTTCAAGTAAAATACCATGCAAACAAGCAGCATACAAGATGCCTGTGTCCGTACATCTTCTACTGCGTTTGGCAAGAACAATAGATGAATCTATAGCTATGTCGGTCCCAATGGAAGATGGTGTGTTTGGCAACGACCACAATACATTCATAAACAGTAATGACATTATCCAATTTTGTTTGATGCAGCCAATATCGACTATTTGCATTTCTATCTACATGAGACACCTCTGGTCATTGTTGAAAATGAAGGAAGAGGATCACTTGTATGCATTTGTGGATCCTGGCCGCATCTCTAATGAAGCTGGAAAGGTTGAGGCAAGATCATGTGCGCTATCACTAAGATTAGAGTCTGCCCAATTAGATCAGTTAATTCTTGCTCCTTATAATACAGGGAATCATTGGTTGTTGGCTGCCATTAACCCGTTTACTGCATTGGTGTATTATTTCGACCCATTGGGTAATACTAACATCAATCCAGGAATGAAGAATATCGTAGAGCTTGCCATTAAAATGTTTAATGCTCAAAAGGGAAGAAAGAATCGTAAAAAAGTTCATTGGGAGGTGGTTAAGTGTCCCAGACAACCTGGATCGGTGGAGTGTGGATATTATGTCATGAAATACATGAAAGAAATTATTGGAACTCCAAGCAGCTCAATTTTAAATATGTTTGAGGGAAAAGAGACATACACTCAAGAGGAGATTGATGTAGTTCGAGTAGAGTGGGCAGAGCAGGTTGATGGATATATCCAAGATGAAGTAAAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

597

Amino Acids

67.23

Weight (kDa)

8.15

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 250 - 330 2.1e-13 Domain of unknown function (DUF8039)
Peptidase_C48 PF02902 465 - 591 2.2e-13 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1410
Acc36I ACCTGC 1 cut(s) 1747
AccB7I CCANNNNNTGG 1 cut(s) 84
AccI GTMKAC 2 cut(s) 483, 774
AccII CGCG 1 cut(s) 674
AciI CCGC 2 cut(s) 672, 1312
AclWI GGATC 9 cut(s) 389, 402, 404, 417, 466, 1290, 1298, 1311, 1621
AcoI YGGCCR 1 cut(s) 1309
AcuI CTGAAG 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 289
AfaI GTAC 5 cut(s) 293, 861, 865, 955, 1077
AfiI CCNNNNNNNGG 2 cut(s) 84, 833
AflIII ACRYGT 2 cut(s) 375, 438
AgsI TTSAA 2 cut(s) 1029, 1267
AhdI GACNNNNNGTC 1 cut(s) 980
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 4 cut(s) 5, 1306, 1501, 1609
AluBI AGCT 9 cut(s) 227, 416, 470, 557, 766, 1121, 1328, 1525, 1677
AluI AGCT 9 cut(s) 227, 416, 470, 557, 766, 1121, 1328, 1525, 1677
Alw26I GTCTC 6 cut(s) 122, 227, 429, 722, 1240, 1700
AlwI GGATC 9 cut(s) 389, 402, 404, 417, 466, 1290, 1298, 1311, 1621
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 3 cut(s) 250, 968, 1309
ApeKI GCWGC 4 cut(s) 1052, 1210, 1436, 1674
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AspLEI GCGC 1 cut(s) 1357
AspS9I GGNCC 2 cut(s) 824, 1129
AsuHPI GGTGA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 2 cut(s) 824, 1129
BaeI ACNNNNGTAYC 2 cut(s) 945, 978
BamHI GGATCC 3 cut(s) 394, 409, 1303
BbvI GCAGC 4 cut(s) 1064, 1222, 1423, 1686
BccI CCATC 5 cut(s) 86, 601, 815, 1136, 1757
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 4 cut(s) 7, 1308, 1503, 1611
BcoDI GTCTC 6 cut(s) 122, 227, 429, 722, 1240, 1700
BfaI CTAG 3 cut(s) 306, 471, 1792
BfmI CTRYAG 1 cut(s) 1116
BfuAI ACCTGC 1 cut(s) 1747
BglII AGATCT 1 cut(s) 446
BisI GCNGC 5 cut(s) 1053, 1211, 1312, 1437, 1675
BlsI GCNGC 5 cut(s) 1054, 1212, 1313, 1438, 1676
Bme1390I CCNGG 4 cut(s) 7, 1308, 1503, 1611
Bme18I GGWCC 2 cut(s) 824, 1129
BmeRI GACNNNNNGTC 1 cut(s) 980
BmeT110I CYCGRG 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 824, 1129
BmiI GGNNCC 4 cut(s) 396, 411, 1131, 1305
BmrFI CCNGG 4 cut(s) 7, 1308, 1503, 1611
BmsI GCATC 8 cut(s) 148, 348, 420, 539, 883, 1053, 1197, 1323
BpuEI CTTGAG 2 cut(s) 207, 1701
BsaAI YACGTR 1 cut(s) 863
BsaBI GATNNNNATC 1 cut(s) 897
BsaJI CCNNGG 1 cut(s) 534
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 833
Bse3DI GCAATG 1 cut(s) 804
Bse8I GATNNNNATC 1 cut(s) 897
BseBI CCWGG 4 cut(s) 7, 1308, 1503, 1611
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 530, 826
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 2 cut(s) 84, 833
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 5 cut(s) 36, 138, 492, 882, 1031
BseRI GAGGAG 1 cut(s) 1736
BseXI GCAGC 4 cut(s) 1064, 1222, 1423, 1686
Bsh1236I CGCG 1 cut(s) 674
BshFI GGCC 3 cut(s) 252, 970, 1311
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 4 cut(s) 67, 663, 1115, 1584
BslI CCNNNNNNNGG 2 cut(s) 84, 833
BsmAI GTCTC 6 cut(s) 122, 227, 429, 722, 1240, 1700
BsmFI GGGAC 4 cut(s) 67, 663, 1115, 1584
BsnI GGCC 3 cut(s) 252, 970, 1311
BsoBI CYCGRG 1 cut(s) 398
BspACI CCGC 2 cut(s) 672, 1312
BspANI GGCC 3 cut(s) 252, 970, 1311
BspCNI CTCAG 5 cut(s) 37, 139, 491, 881, 1030
BspFNI CGCG 1 cut(s) 674
BspHI TCATGA 1 cut(s) 1638
BspLI GGNNCC 4 cut(s) 396, 411, 1131, 1305
BspMI ACCTGC 1 cut(s) 1747
BspPI GGATC 9 cut(s) 389, 402, 404, 417, 466, 1290, 1298, 1311, 1621
BsrDI GCAATG 1 cut(s) 804
BssECI CCNNGG 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 4 cut(s) 7, 1308, 1503, 1611
Bst4CI ACNGT 3 cut(s) 808, 937, 1181
Bst6I CTCTTC 3 cut(s) 24, 993, 1272
BstBAI YACGTR 1 cut(s) 863
BstC8I GCNNGC 4 cut(s) 318, 768, 945, 1527
BstDEI CTNAG 8 cut(s) 45, 147, 478, 507, 522, 868, 1017, 1364
BstF5I GGATG 2 cut(s) 530, 826
BstFNI CGCG 1 cut(s) 674
BstHHI GCGC 1 cut(s) 1357
BstMAI GTCTC 6 cut(s) 122, 227, 429, 722, 1240, 1700
BstNI CCWGG 4 cut(s) 7, 1308, 1503, 1611
BstNSI RCATGY 2 cut(s) 379, 442
BstSCI CCNGG 4 cut(s) 5, 1306, 1501, 1609
BstSFI CTRYAG 1 cut(s) 1116
BstSNI TACGTA 1 cut(s) 863
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 4 cut(s) 1064, 1222, 1423, 1686
BstX2I RGATCY 5 cut(s) 394, 409, 446, 458, 1303
BstYI RGATCY 5 cut(s) 394, 409, 446, 458, 1303
BsuRI GGCC 3 cut(s) 252, 970, 1311
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 530, 826
BveI ACCTGC 1 cut(s) 1747
Cac8I GCNNGC 4 cut(s) 318, 768, 945, 1527
CciI TCATGA 1 cut(s) 1638
CfoI GCGC 1 cut(s) 1357
Cfr13I GGNCC 2 cut(s) 824, 1129
Csp6I GTAC 5 cut(s) 292, 860, 864, 954, 1076
CviQI GTAC 5 cut(s) 292, 860, 864, 954, 1076
DdeI CTNAG 8 cut(s) 45, 147, 478, 507, 522, 868, 1017, 1364
DraI TTTAAA 1 cut(s) 1686
DraIII CACNNNGTG 1 cut(s) 289
DriI GACNNNNNGTC 1 cut(s) 980
EaeI YGGCCR 1 cut(s) 1309
Eam1104I CTCTTC 3 cut(s) 24, 993, 1272
Eam1105I GACNNNNNGTC 1 cut(s) 980
EarI CTCTTC 3 cut(s) 24, 993, 1272
Eco105I TACGTA 1 cut(s) 863
Eco130I CCWWGG 1 cut(s) 534
Eco47I GGWCC 2 cut(s) 824, 1129
Eco57I CTGAAG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 398
EcoRII CCWGG 4 cut(s) 5, 1306, 1501, 1609
EcoT14I CCWWGG 1 cut(s) 534
EcoT22I ATGCAT 1 cut(s) 1297
ErhI CCWWGG 1 cut(s) 534
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 278, 310
FaqI GGGAC 4 cut(s) 67, 663, 1115, 1584
FblI GTMKAC 2 cut(s) 483, 774
Fnu4HI GCNGC 5 cut(s) 1053, 1211, 1312, 1437, 1675
FokI GGATG 2 cut(s) 517, 833
Fsp4HI GCNGC 5 cut(s) 1053, 1211, 1312, 1437, 1675
FspBI CTAG 3 cut(s) 306, 471, 1792
GlaI GCGC 1 cut(s) 1356
GluI GCNGC 5 cut(s) 1053, 1211, 1312, 1437, 1675
HaeIII GGCC 3 cut(s) 252, 970, 1311
HapII CCGG 1 cut(s) 239
HhaI GCGC 1 cut(s) 1357
Hin6I GCGC 1 cut(s) 1355
HinP1I GCGC 1 cut(s) 1355
HincII GTYRAC 2 cut(s) 484, 685
HindII GTYRAC 2 cut(s) 484, 685
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 5 cut(s) 220, 1112, 1373, 1420, 1564
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 935
Hpy166II GTNNAC 6 cut(s) 292, 484, 583, 685, 775, 1452
Hpy188I TCNGA 5 cut(s) 46, 446, 463, 576, 1020
Hpy188III TCNNGA 4 cut(s) 306, 398, 1639, 1718
Hpy8I GTNNAC 6 cut(s) 292, 484, 583, 685, 775, 1452
HpyAV CCTTC 3 cut(s) 176, 619, 1267
HpyCH4III ACNGT 3 cut(s) 808, 937, 1181
HpyCH4IV ACGT 3 cut(s) 142, 174, 862
HpyCH4V TGCA 9 cut(s) 320, 361, 563, 797, 1044, 1210, 1230, 1295, 1457
HpyF3I CTNAG 8 cut(s) 45, 147, 478, 507, 522, 868, 1017, 1364
HpySE526I ACGT 3 cut(s) 142, 174, 862
HspAI GCGC 1 cut(s) 1355
LmnI GCTCC 3 cut(s) 241, 848, 1408
Lsp1109I GCAGC 4 cut(s) 1064, 1222, 1423, 1686
LweI GCATC 8 cut(s) 148, 348, 420, 539, 883, 1053, 1197, 1323
MaeI CTAG 3 cut(s) 306, 471, 1792
MaeII ACGT 3 cut(s) 142, 174, 862
MaeIII GTNAC 4 cut(s) 113, 277, 923, 990
MfeI CAATTG 2 cut(s) 347, 600
MflI RGATCY 5 cut(s) 394, 409, 446, 458, 1303
MlyI GAGTC 2 cut(s) 214, 1382
MmeI TCCRAC 5 cut(s) 318, 387, 657, 721, 798
Mph1103I ATGCAT 1 cut(s) 1297
MslI CAYNNNNRTG 2 cut(s) 1290, 1535
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 4 cut(s) 7, 1308, 1503, 1611
MunI CAATTG 2 cut(s) 347, 600
MvaI CCWGG 4 cut(s) 7, 1308, 1503, 1611
MvnI CGCG 1 cut(s) 674
NlaIV GGNNCC 4 cut(s) 396, 411, 1131, 1305
NmuCI GTSAC 2 cut(s) 923, 990
NsiI ATGCAT 1 cut(s) 1297
NspI RCATGY 2 cut(s) 379, 442
PagI TCATGA 1 cut(s) 1638
PciI ACATGT 2 cut(s) 375, 438
PfeI GAWTC 3 cut(s) 1112, 1420, 1564
PflMI CCANNNNNTGG 1 cut(s) 84
PfoI TCCNGGA 2 cut(s) 5, 1501
PkrI GCNGC 5 cut(s) 1054, 1212, 1313, 1438, 1676
PleI GAGTC 2 cut(s) 214, 1381
PpsI GAGTC 2 cut(s) 214, 1381
Ppu21I YACGTR 1 cut(s) 863
PscI ACATGT 2 cut(s) 375, 438
PsiI TTATAA 1 cut(s) 1410
Psp6I CCWGG 4 cut(s) 5, 1306, 1501, 1609
PspGI CCWGG 4 cut(s) 5, 1306, 1501, 1609
PspN4I GGNNCC 4 cut(s) 396, 411, 1131, 1305
PspPI GGNCC 2 cut(s) 824, 1129
PsuI RGATCY 5 cut(s) 394, 409, 446, 458, 1303
RsaI GTAC 5 cut(s) 293, 861, 865, 955, 1077
RsaNI GTAC 5 cut(s) 292, 860, 864, 954, 1076
RseI CAYNNNNRTG 2 cut(s) 1290, 1535
SalI GTCGAC 1 cut(s) 482
SatI GCNGC 5 cut(s) 1053, 1211, 1312, 1437, 1675
Sau96I GGNCC 2 cut(s) 824, 1129
SchI GAGTC 2 cut(s) 214, 1382
ScrFI CCNGG 4 cut(s) 7, 1308, 1503, 1611
SfaNI GCATC 8 cut(s) 148, 348, 420, 539, 883, 1053, 1197, 1323
SfcI CTRYAG 1 cut(s) 1116
SinI GGWCC 2 cut(s) 824, 1129
SmiMI CAYNNNNRTG 2 cut(s) 1290, 1535
SmlI CTYRAG 2 cut(s) 222, 1716
SmoI CTYRAG 2 cut(s) 222, 1716
SnaBI TACGTA 1 cut(s) 863
SsiI CCGC 2 cut(s) 672, 1312
SspMI CTAG 3 cut(s) 306, 471, 1792
StyD4I CCNGG 4 cut(s) 5, 1306, 1501, 1609
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 808, 937, 1181
TaiI ACGT 3 cut(s) 145, 177, 865
TaqI TCGA 6 cut(s) 102, 483, 973, 1220, 1473, 1738
TaqII GACCGA 2 cut(s) 841, 1117
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 1314
TfiI GAWTC 3 cut(s) 1112, 1420, 1564
TseFI GTSAC 2 cut(s) 923, 990
TseI GCWGC 4 cut(s) 1052, 1210, 1436, 1674
Tsp45I GTSAC 2 cut(s) 923, 990
TspGWI ACGGA 1 cut(s) 1063
Van91I CCANNNNNTGG 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 824, 1129
XbaI TCTAGA 1 cut(s) 305
XceI RCATGY 2 cut(s) 379, 442
XmiI GTMKAC 2 cut(s) 483, 774
XspI CTAG 3 cut(s) 306, 471, 1792
Zsp2I ATGCAT 1 cut(s) 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.