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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1521 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 537 |
| AccI | GTMKAC | 1 cut(s) | 936 |
| AciI | CCGC | 1 cut(s) | 1423 |
| AcoI | YGGCCR | 2 cut(s) | 230, 1420 |
| AcsI | RAATTY | 2 cut(s) | 244, 485 |
| AcuI | CTGAAG | 3 cut(s) | 51, 441, 531 |
| AfaI | GTAC | 2 cut(s) | 192, 746 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 537 |
| AflIII | ACRYGT | 2 cut(s) | 828, 891 |
| AgsI | TTSAA | 5 cut(s) | 9, 352, 382, 493, 1378 |
| AjnI | CCWGG | 2 cut(s) | 1417, 1612 |
| AluBI | AGCT | 7 cut(s) | 176, 458, 680, 923, 1010, 1439, 1636 |
| AluI | AGCT | 7 cut(s) | 176, 458, 680, 923, 1010, 1439, 1636 |
| Alw21I | GWGCWC | 2 cut(s) | 359, 1217 |
| Alw26I | GTCTC | 8 cut(s) | 218, 474, 575, 680, 882, 1108, 1175, 1351 |
| Ama87I | CYCGRG | 1 cut(s) | 851 |
| AoxI | GGCC | 3 cut(s) | 230, 703, 1420 |
| ApeKI | GCWGC | 3 cut(s) | 399, 1253, 1547 |
| ApoI | RAATTY | 2 cut(s) | 244, 485 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 664, 696 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 284, 347 |
| AspLEI | GCGC | 2 cut(s) | 399, 1468 |
| AspS9I | GGNCC | 2 cut(s) | 68, 703 |
| AsuNHI | GCTAGC | 1 cut(s) | 172 |
| AvaI | CYCGRG | 1 cut(s) | 851 |
| AvaII | GGWCC | 1 cut(s) | 68 |
| BalI | TGGCCA | 1 cut(s) | 232 |
| BamHI | GGATCC | 3 cut(s) | 295, 847, 1414 |
| BanII | GRGCYC | 1 cut(s) | 115 |
| BbsI | GAAGAC | 3 cut(s) | 519, 948, 1218 |
| Bbv12I | GWGCWC | 2 cut(s) | 359, 1217 |
| BbvI | GCAGC | 3 cut(s) | 411, 1265, 1534 |
| BccI | CCATC | 3 cut(s) | 52, 539, 1054 |
| BceAI | ACGGC | 2 cut(s) | 221, 690 |
| BciT130I | CCWGG | 2 cut(s) | 1419, 1614 |
| BcoDI | GTCTC | 8 cut(s) | 218, 474, 575, 680, 882, 1108, 1175, 1351 |
| BfaI | CTAG | 8 cut(s) | 173, 720, 759, 866, 875, 924, 1455, 1637 |
| BfmI | CTRYAG | 1 cut(s) | 1317 |
| BisI | GCNGC | 4 cut(s) | 400, 1254, 1423, 1548 |
| BlsI | GCNGC | 4 cut(s) | 401, 1255, 1424, 1549 |
| Bme1390I | CCNGG | 2 cut(s) | 1419, 1614 |
| Bme18I | GGWCC | 1 cut(s) | 68 |
| BmeT110I | CYCGRG | 1 cut(s) | 851 |
| BmgT120I | GGNCC | 2 cut(s) | 68, 703 |
| BmiI | GGNNCC | 3 cut(s) | 297, 849, 1416 |
| BmrFI | CCNGG | 2 cut(s) | 1419, 1614 |
| BmsI | GCATC | 6 cut(s) | 601, 801, 992, 1254, 1288, 1434 |
| BmtI | GCTAGC | 1 cut(s) | 176 |
| BpiI | GAAGAC | 3 cut(s) | 519, 948, 1218 |
| BpmI | CTGGAG | 1 cut(s) | 465 |
| Bpu10I | CCTNAGC | 1 cut(s) | 693 |
| BpuEI | CTTGAG | 2 cut(s) | 340, 660 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1483 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1033, 1063 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 537 |
| Bse1I | ACTGG | 1 cut(s) | 198 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1483 |
| BseBI | CCWGG | 2 cut(s) | 1419, 1614 |
| BseGI | GGATG | 2 cut(s) | 1042, 1315 |
| BseJI | GATNNNNATC | 1 cut(s) | 1483 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 537 |
| BseMII | CTCAG | 5 cut(s) | 438, 684, 945, 978, 1466 |
| BseNI | ACTGG | 1 cut(s) | 198 |
| BseRI | GAGGAG | 2 cut(s) | 980, 1137 |
| BseXI | GCAGC | 3 cut(s) | 411, 1265, 1534 |
| BsgI | GTGCAG | 1 cut(s) | 348 |
| BshFI | GGCC | 3 cut(s) | 232, 705, 1422 |
| BsiHKAI | GWGCWC | 2 cut(s) | 359, 1217 |
| BsiHKCI | CYCGRG | 1 cut(s) | 851 |
| BslFI | GGGAC | 2 cut(s) | 520, 1116 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 537 |
| BsmAI | GTCTC | 8 cut(s) | 218, 474, 575, 680, 882, 1108, 1175, 1351 |
| BsmFI | GGGAC | 2 cut(s) | 520, 1116 |
| BsnI | GGCC | 3 cut(s) | 232, 705, 1422 |
| BsoBI | CYCGRG | 1 cut(s) | 851 |
| Bsp1286I | GDGCHC | 3 cut(s) | 115, 359, 1217 |
| BspACI | CCGC | 1 cut(s) | 1423 |
| BspANI | GGCC | 3 cut(s) | 232, 705, 1422 |
| BspCNI | CTCAG | 5 cut(s) | 439, 685, 944, 979, 1467 |
| BspLI | GGNNCC | 3 cut(s) | 297, 849, 1416 |
| BspOI | GCTAGC | 1 cut(s) | 176 |
| BsrI | ACTGG | 1 cut(s) | 198 |
| Bst2UI | CCWGG | 2 cut(s) | 1419, 1614 |
| Bst4CI | ACNGT | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 2 cut(s) | 58, 161 |
| BstC8I | GCNNGC | 2 cut(s) | 174, 234 |
| BstDEI | CTNAG | 7 cut(s) | 447, 693, 931, 960, 975, 987, 1475 |
| BstF5I | GGATG | 2 cut(s) | 1042, 1315 |
| BstHHI | GCGC | 2 cut(s) | 399, 1468 |
| BstMAI | GTCTC | 8 cut(s) | 218, 474, 575, 680, 882, 1108, 1175, 1351 |
| BstNI | CCWGG | 2 cut(s) | 1419, 1614 |
| BstNSI | RCATGY | 2 cut(s) | 832, 895 |
| BstSCI | CCNGG | 2 cut(s) | 1417, 1612 |
| BstSFI | CTRYAG | 1 cut(s) | 1317 |
| BstV1I | GCAGC | 3 cut(s) | 411, 1265, 1534 |
| BstV2I | GAAGAC | 3 cut(s) | 519, 948, 1218 |
| BstX2I | RGATCY | 5 cut(s) | 295, 847, 862, 911, 1414 |
| BstYI | RGATCY | 5 cut(s) | 295, 847, 862, 911, 1414 |
| BsuRI | GGCC | 3 cut(s) | 232, 705, 1422 |
| BtsCI | GGATG | 2 cut(s) | 1042, 1315 |
| BtsIMutI | CAGTG | 2 cut(s) | 27, 1472 |
| Cac8I | GCNNGC | 2 cut(s) | 174, 234 |
| CfoI | GCGC | 2 cut(s) | 399, 1468 |
| Cfr13I | GGNCC | 2 cut(s) | 68, 703 |
| Csp6I | GTAC | 2 cut(s) | 191, 745 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 431, 466 |
| CviAII | CATG | 8 cut(s) | 23, 79, 829, 880, 892, 1354, 1461, 1618 |
| CviQI | GTAC | 2 cut(s) | 191, 745 |
| DdeI | CTNAG | 7 cut(s) | 447, 693, 931, 960, 975, 987, 1475 |
| EaeI | YGGCCR | 2 cut(s) | 230, 1420 |
| Eam1104I | CTCTTC | 2 cut(s) | 58, 161 |
| EarI | CTCTTC | 2 cut(s) | 58, 161 |
| Eco24I | GRGCYC | 1 cut(s) | 115 |
| Eco47I | GGWCC | 1 cut(s) | 68 |
| Eco57I | CTGAAG | 3 cut(s) | 51, 441, 531 |
| Eco88I | CYCGRG | 1 cut(s) | 851 |
| EcoRI | GAATTC | 1 cut(s) | 244 |
| EcoRII | CCWGG | 2 cut(s) | 1417, 1612 |
| EcoT22I | ATGCAT | 1 cut(s) | 1408 |
| EcoT38I | GRGCYC | 1 cut(s) | 115 |
| FaeI | CATG | 8 cut(s) | 26, 82, 832, 883, 895, 1357, 1464, 1621 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 731, 763 |
| FaqI | GGGAC | 2 cut(s) | 520, 1116 |
| FatI | CATG | 8 cut(s) | 22, 78, 828, 879, 891, 1353, 1460, 1617 |
| FauNDI | CATATG | 1 cut(s) | 220 |
| FblI | GTMKAC | 1 cut(s) | 936 |
| Fnu4HI | GCNGC | 4 cut(s) | 400, 1254, 1423, 1548 |
| FokI | GGATG | 2 cut(s) | 1049, 1322 |
| FriOI | GRGCYC | 1 cut(s) | 115 |
| Fsp4HI | GCNGC | 4 cut(s) | 400, 1254, 1423, 1548 |
| FspBI | CTAG | 8 cut(s) | 173, 720, 759, 866, 875, 924, 1455, 1637 |
| GlaI | GCGC | 2 cut(s) | 398, 1467 |
| GluI | GCNGC | 4 cut(s) | 400, 1254, 1423, 1548 |
| GsuI | CTGGAG | 1 cut(s) | 465 |
| HaeIII | GGCC | 3 cut(s) | 232, 705, 1422 |
| HhaI | GCGC | 2 cut(s) | 399, 1468 |
| Hin1II | CATG | 8 cut(s) | 26, 82, 832, 883, 895, 1357, 1464, 1621 |
| Hin6I | GCGC | 2 cut(s) | 397, 1466 |
| HinP1I | GCGC | 2 cut(s) | 397, 1466 |
| HincII | GTYRAC | 1 cut(s) | 937 |
| HindII | GTYRAC | 1 cut(s) | 937 |
| HindIII | AAGCTT | 2 cut(s) | 456, 678 |
| HinfI | GANTC | 6 cut(s) | 5, 673, 883, 1313, 1484, 1531 |
| Hpy166II | GTNNAC | 3 cut(s) | 745, 937, 1563 |
| Hpy188I | TCNGA | 6 cut(s) | 49, 85, 279, 899, 916, 988 |
| Hpy188III | TCNNGA | 7 cut(s) | 319, 352, 471, 482, 759, 851, 887 |
| Hpy8I | GTNNAC | 3 cut(s) | 745, 937, 1563 |
| HpyAV | CCTTC | 3 cut(s) | 52, 327, 1072 |
| HpyCH4III | ACNGT | 1 cut(s) | 98 |
| HpyCH4IV | ACGT | 2 cut(s) | 595, 1291 |
| HpyCH4V | TGCA | 7 cut(s) | 329, 773, 814, 1279, 1341, 1406, 1568 |
| HpyF3I | CTNAG | 7 cut(s) | 447, 693, 931, 960, 975, 987, 1475 |
| HpySE526I | ACGT | 2 cut(s) | 595, 1291 |
| Hsp92II | CATG | 8 cut(s) | 26, 82, 832, 883, 895, 1357, 1464, 1621 |
| HspAI | GCGC | 2 cut(s) | 397, 1466 |
| LmnI | GCTCC | 2 cut(s) | 1124, 1519 |
| Lsp1109I | GCAGC | 3 cut(s) | 411, 1265, 1534 |
| LweI | GCATC | 6 cut(s) | 601, 801, 992, 1254, 1288, 1434 |
| MaeI | CTAG | 8 cut(s) | 173, 720, 759, 866, 875, 924, 1455, 1637 |
| MaeII | ACGT | 2 cut(s) | 595, 1291 |
| MaeIII | GTNAC | 4 cut(s) | 124, 566, 730, 1595 |
| MfeI | CAATTG | 4 cut(s) | 150, 785, 1053, 1088 |
| MflI | RGATCY | 5 cut(s) | 295, 847, 862, 911, 1414 |
| MhlI | GDGCHC | 3 cut(s) | 115, 359, 1217 |
| MlsI | TGGCCA | 1 cut(s) | 232 |
| MluNI | TGGCCA | 1 cut(s) | 232 |
| MlyI | GAGTC | 1 cut(s) | 667 |
| MmeI | TCCRAC | 4 cut(s) | 95, 771, 783, 840 |
| Mox20I | TGGCCA | 1 cut(s) | 232 |
| Mph1103I | ATGCAT | 1 cut(s) | 1408 |
| MroXI | GAANNNNTTC | 2 cut(s) | 284, 347 |
| MscI | TGGCCA | 1 cut(s) | 232 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1401 |
| Msp20I | TGGCCA | 1 cut(s) | 232 |
| MspR9I | CCNGG | 2 cut(s) | 1419, 1614 |
| MunI | CAATTG | 4 cut(s) | 150, 785, 1053, 1088 |
| MvaI | CCWGG | 2 cut(s) | 1419, 1614 |
| NdeI | CATATG | 1 cut(s) | 220 |
| NheI | GCTAGC | 1 cut(s) | 172 |
| NlaIII | CATG | 8 cut(s) | 26, 82, 832, 883, 895, 1357, 1464, 1621 |
| NlaIV | GGNNCC | 3 cut(s) | 297, 849, 1416 |
| NmuCI | GTSAC | 1 cut(s) | 124 |
| NsiI | ATGCAT | 1 cut(s) | 1408 |
| NspI | RCATGY | 2 cut(s) | 832, 895 |
| PciI | ACATGT | 2 cut(s) | 828, 891 |
| PdmI | GAANNNNTTC | 2 cut(s) | 284, 347 |
| PfeI | GAWTC | 5 cut(s) | 5, 883, 1313, 1484, 1531 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 537 |
| PkrI | GCNGC | 4 cut(s) | 401, 1255, 1424, 1549 |
| PleI | GAGTC | 1 cut(s) | 667 |
| PpsI | GAGTC | 1 cut(s) | 667 |
| PscI | ACATGT | 2 cut(s) | 828, 891 |
| PsiI | TTATAA | 1 cut(s) | 1521 |
| Psp6I | CCWGG | 2 cut(s) | 1417, 1612 |
| PspGI | CCWGG | 2 cut(s) | 1417, 1612 |
| PspN4I | GGNNCC | 3 cut(s) | 297, 849, 1416 |
| PspPI | GGNCC | 2 cut(s) | 68, 703 |
| PsuI | RGATCY | 5 cut(s) | 295, 847, 862, 911, 1414 |
| RsaI | GTAC | 2 cut(s) | 192, 746 |
| RsaNI | GTAC | 2 cut(s) | 191, 745 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1401 |
| SalI | GTCGAC | 1 cut(s) | 935 |
| SatI | GCNGC | 4 cut(s) | 400, 1254, 1423, 1548 |
| Sau96I | GGNCC | 2 cut(s) | 68, 703 |
| SchI | GAGTC | 1 cut(s) | 667 |
| ScrFI | CCNGG | 2 cut(s) | 1419, 1614 |
| SduI | GDGCHC | 3 cut(s) | 115, 359, 1217 |
| SfaNI | GCATC | 6 cut(s) | 601, 801, 992, 1254, 1288, 1434 |
| SfcI | CTRYAG | 1 cut(s) | 1317 |
| SinI | GGWCC | 1 cut(s) | 68 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1401 |
| SmlI | CTYRAG | 2 cut(s) | 319, 675 |
| SmoI | CTYRAG | 2 cut(s) | 319, 675 |
| SsiI | CCGC | 1 cut(s) | 1423 |
| SspMI | CTAG | 8 cut(s) | 173, 720, 759, 866, 875, 924, 1455, 1637 |
| StyD4I | CCNGG | 2 cut(s) | 1417, 1612 |
| TaaI | ACNGT | 1 cut(s) | 98 |
| TaiI | ACGT | 2 cut(s) | 598, 1294 |
| TaqI | TCGA | 9 cut(s) | 115, 199, 472, 555, 886, 936, 1027, 1229, 1584 |
| TatI | WGTACW | 1 cut(s) | 744 |
| TauI | GCSGC | 1 cut(s) | 1425 |
| TfiI | GAWTC | 5 cut(s) | 5, 883, 1313, 1484, 1531 |
| TscAI | CASTG | 2 cut(s) | 34, 1479 |
| TseFI | GTSAC | 1 cut(s) | 124 |
| TseI | GCWGC | 3 cut(s) | 399, 1253, 1547 |
| Tsp45I | GTSAC | 1 cut(s) | 124 |
| TspDTI | ATGAA | 5 cut(s) | 277, 828, 1326, 1449, 1634 |
| TspGWI | ACGGA | 1 cut(s) | 1264 |
| TspRI | CASTG | 2 cut(s) | 34, 1479 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 537 |
| VpaK11BI | GGWCC | 1 cut(s) | 68 |
| XapI | RAATTY | 2 cut(s) | 244, 485 |
| XbaI | TCTAGA | 1 cut(s) | 758 |
| XceI | RCATGY | 2 cut(s) | 832, 895 |
| XmiI | GTMKAC | 1 cut(s) | 936 |
| XmnI | GAANNNNTTC | 2 cut(s) | 284, 347 |
| XspI | CTAG | 8 cut(s) | 173, 720, 759, 866, 875, 924, 1455, 1637 |
| Zsp2I | ATGCAT | 1 cut(s) | 1408 |