Rh1DG134800

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000321
Physical Location & Seq
Reverse (-)
28229144 .. 28230206
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG134800.1

Sequence Viewer

Length: 588 bp
ATGGATCCAGAAGAACAAAATCATGATACTGAAGATGACTTGTCATCTGATGAGAAGAAAGGGAGAGGTCCAACTCTGATGTCCGACATTATTCATAGTAGGAGTAAGGGGGCTCGAATGGAAGTCACATATAACAAAAAGGGGCAACCAATTGGTCTTGAAGGGAAGAGGCTAGCCACTTTTATTGGGGTAATGGCTCGAACTACCATCCCAATCACATATAAGACTTGGCTAGCAGTGAAGAATTCACTTAAAGAAATGATATGGAGTATGGTTCAGTGGGAAGCTTTTGTGAAATCTCGATTAACTCCTAAATTTTTGGAAATTCATGAGGACCACTCAAGGAGACGAGCTTTACATGAGTATGATCATCGAATGTCCAAGAAAGGCTATGCTAATTTGGAAGAGGAACTTAAATCAGAGTTAGGGACTGAAGAAGATATTGATAGAGCCATCTTATGGAAGAAATGGCGTGTCGATAAAGAGGGTAACTATTTGAGTGAGACAACCAAACAACGTGTTGAGAAAATTGTGAATTTAGCTTTATCAAACCTTAATCATCTTAAAAGCCTAAATGTACATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

195

Amino Acids

22.68

Weight (kDa)

8.64

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 93 - 190 1.7e-09 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 459
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 4 cut(s) 244, 314, 324, 535
AcuI CTGAAG 2 cut(s) 51, 453
AfaI GTAC 1 cut(s) 579
AfiI CCNNNNNNNGG 1 cut(s) 459
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 3 cut(s) 287, 353, 542
AluI AGCT 3 cut(s) 287, 353, 542
Alw26I GTCTC 2 cut(s) 340, 497
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 4 cut(s) 244, 314, 324, 535
AspS9I GGNCC 2 cut(s) 68, 334
AsuNHI GCTAGC 2 cut(s) 172, 232
AvaII GGWCC 2 cut(s) 68, 334
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 115
BccI CCATC 2 cut(s) 215, 461
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 340, 497
BfaI CTAG 2 cut(s) 173, 233
Bme18I GGWCC 2 cut(s) 68, 334
BmgT120I GGNCC 2 cut(s) 68, 334
BmiI GGNNCC 1 cut(s) 6
BmtI GCTAGC 2 cut(s) 176, 236
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpuEI CTTGAG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 459
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 2 cut(s) 340, 497
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 577
Bsp143I GATC 2 cut(s) 4, 367
BspHI TCATGA 2 cut(s) 22, 328
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 2 cut(s) 176, 236
BspPI GGATC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 577
BssMI GATC 2 cut(s) 4, 367
Bst6I CTCTTC 2 cut(s) 161, 399
BstAUI TGTACA 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 174, 234
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 2 cut(s) 7, 370
BstMAI GTCTC 2 cut(s) 340, 497
BstMBI GATC 2 cut(s) 4, 367
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 284
Cac8I GCNNGC 2 cut(s) 174, 234
CciI TCATGA 2 cut(s) 22, 328
Cfr13I GGNCC 2 cut(s) 68, 334
Csp6I GTAC 1 cut(s) 578
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 4 cut(s) 23, 329, 359, 581
CviQI GTAC 1 cut(s) 578
DpnI GATC 2 cut(s) 6, 369
DpnII GATC 2 cut(s) 4, 367
Eam1104I CTCTTC 2 cut(s) 161, 399
EarI CTCTTC 2 cut(s) 161, 399
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 68, 334
Eco57I CTGAAG 2 cut(s) 51, 453
EcoRI GAATTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 4 cut(s) 26, 332, 362, 584
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 442
FatI CATG 4 cut(s) 22, 328, 358, 580
FbaI TGATCA 1 cut(s) 367
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 2 cut(s) 173, 233
Hin1II CATG 4 cut(s) 26, 332, 362, 584
HindIII AAGCTT 1 cut(s) 285
Hpy188I TCNGA 4 cut(s) 49, 78, 85, 421
Hpy188III TCNNGA 5 cut(s) 8, 23, 158, 300, 329
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 517
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 4 cut(s) 26, 332, 362, 584
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 2 cut(s) 4, 367
LpnPI CCDG 1 cut(s) 21
MaeI CTAG 2 cut(s) 173, 233
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 2 cut(s) 124, 488
MalI GATC 2 cut(s) 6, 369
MboI GATC 2 cut(s) 4, 367
MboII GAAGA 9 cut(s) 23, 44, 67, 178, 253, 416, 446, 449, 475
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 7 cut(s) 150, 244, 314, 324, 397, 528, 535
MmeI TCCRAC 2 cut(s) 95, 108
MnlI CCTC 5 cut(s) 59, 162, 325, 400, 478
MseI TTAA 5 cut(s) 252, 305, 414, 555, 564
MslI CAYNNNNRTG 1 cut(s) 363
MunI CAATTG 1 cut(s) 150
NdeII GATC 2 cut(s) 4, 367
NheI GCTAGC 2 cut(s) 172, 232
NlaIII CATG 4 cut(s) 26, 332, 362, 584
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 124
PagI TCATGA 2 cut(s) 22, 328
PflMI CCANNNNNTGG 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 68, 334
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 5 cut(s) 252, 305, 414, 555, 564
Sau3AI GATC 2 cut(s) 4, 367
Sau96I GGNCC 2 cut(s) 68, 334
SduI GDGCHC 1 cut(s) 115
SetI ASST 6 cut(s) 70, 289, 355, 520, 544, 555
SinI GGWCC 2 cut(s) 68, 334
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 7 cut(s) 150, 244, 314, 324, 397, 528, 535
SspMI CTAG 2 cut(s) 173, 233
TaiI ACGT 1 cut(s) 520
TaqI TCGA 5 cut(s) 115, 199, 301, 373, 477
TasI AATT 7 cut(s) 150, 244, 314, 324, 397, 528, 535
TatI WGTACW 1 cut(s) 577
Tru1I TTAA 5 cut(s) 252, 305, 414, 555, 564
Tru9I TTAA 5 cut(s) 252, 305, 414, 555, 564
TscAI CASTG 2 cut(s) 243, 284
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 83, 317
TspRI CASTG 2 cut(s) 243, 284
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 2 cut(s) 68, 334
XapI RAATTY 4 cut(s) 244, 314, 324, 535
XspI CTAG 2 cut(s) 173, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.