Rorug05G0043100

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
3779743 .. 3780183
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0043100.1

Sequence Viewer

Length: 441 bp
ATGGCAGGTCAAGAGGACTCCATTGAAGTAGTTGCTGCGACACGAAAAGAGATGATAAGAGCCCTTAGAGCTGCACAGGAACTGTCAAACACTCCGGATGAGGACTCTGCTCGTATTAACAATAACACTGACGATGACAACGAAGCTAGTGAAGAAACTAATATGAGTGTGAAGTTCCGAAATTATTTCCCTCGTGATAAGAAGCTTATGGAAGGAAAGCTTAAAACTGGTCCAATATTGAAGTTTGATGACCCTATTGCAGCAGTAGTGCCTTTTCCATCAGAGAAGAAAAAGGACCCGTTCAAGGATCTTGTTCCCAAAGCACCACACTTTGAACTTCAAAGGGATGTGCAGAAGAGGCTTGATAAGCTTGAAAGGCGAACGCAGAAGGCGTTGTGTAAAATTATGGAGCAAGAAAGGCTGAAGCAAGAGACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.86

Weight (kDa)

6.01

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cwf18 PF08315 8 - 138 5.5e-19 cwf18 pre-mRNA splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 94
AclWI GGATC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 6 cut(s) 26, 241, 304, 335, 341, 374
AluBI AGCT 5 cut(s) 71, 146, 205, 220, 370
AluI AGCT 5 cut(s) 71, 146, 205, 220, 370
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 315
AlwNI CAGNNNCTG 1 cut(s) 82
Aor13HI TCCGGA 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 35, 71, 260
AspS9I GGNCC 2 cut(s) 230, 295
AvaII GGWCC 2 cut(s) 230, 295
BanII GRGCYC 1 cut(s) 64
BauI CACGAG 1 cut(s) 192
BbvI GCAGC 3 cut(s) 22, 58, 272
BccI CCATC 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 147
BisI GCNGC 3 cut(s) 36, 72, 261
BlsI GCNGC 3 cut(s) 37, 73, 262
Bme18I GGWCC 2 cut(s) 230, 295
BmgT120I GGNCC 2 cut(s) 230, 295
BmiI GGNNCC 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 94
BseGI GGATG 2 cut(s) 103, 352
BseLI CCNNNNNNNGG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 232
BseXI GCAGC 3 cut(s) 22, 58, 272
BsgI GTGCAG 2 cut(s) 57, 371
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 232
BssMI GATC 1 cut(s) 307
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 103, 352
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 5 cut(s) 68, 358, 367, 376, 418
BstV1I GCAGC 3 cut(s) 22, 58, 272
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BtsCI GGATG 2 cut(s) 103, 352
BtsIMutI CAGTG 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 230, 295
CviJI RGCY 8 cut(s) 62, 71, 146, 205, 220, 361, 370, 421
CviKI_1 RGCY 8 cut(s) 62, 71, 146, 205, 220, 361, 370, 421
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 230, 295
EcoO109I RGGNCCY 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 64
FaiI YATR 3 cut(s) 164, 209, 407
FalI AAGNNNNNCTT 2 cut(s) 204, 236
Fnu4HI GCNGC 3 cut(s) 36, 72, 261
FokI GGATG 2 cut(s) 110, 359
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 3 cut(s) 36, 72, 261
FspBI CTAG 1 cut(s) 147
GluI GCNGC 3 cut(s) 36, 72, 261
HapII CCGG 1 cut(s) 95
HindIII AAGCTT 3 cut(s) 203, 218, 368
HinfI GANTC 2 cut(s) 17, 104
HpaII CCGG 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 179, 283
Hpy188III TCNNGA 3 cut(s) 11, 95, 194
HpyAV CCTTC 2 cut(s) 206, 382
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 74, 260, 352
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 358, 367, 376, 418
HpyF3I CTNAG 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 3 cut(s) 62, 108, 213
Lsp1109I GCAGC 3 cut(s) 22, 58, 272
MaeI CTAG 1 cut(s) 147
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 164, 298, 367
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 181, 402
MlyI GAGTC 2 cut(s) 11, 98
MnlI CCTC 4 cut(s) 7, 94, 201, 351
MroI TCCGGA 1 cut(s) 94
MseI TTAA 2 cut(s) 117, 222
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 5 cut(s) 68, 358, 367, 376, 418
NdeII GATC 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 297
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 389
PkrI GCNGC 3 cut(s) 37, 73, 262
PleI GAGTC 2 cut(s) 11, 98
PpsI GAGTC 2 cut(s) 11, 98
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 2 cut(s) 230, 295
PspPPI RGGWCCY 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 307
SaqAI TTAA 2 cut(s) 117, 222
SatI GCNGC 3 cut(s) 36, 72, 261
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 230, 295
SchI GAGTC 2 cut(s) 11, 98
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 10, 73, 148, 207, 222, 372
SinI GGWCC 2 cut(s) 230, 295
Sse9I AATT 2 cut(s) 181, 402
SspI AATATT 1 cut(s) 237
SspMI CTAG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 84
TasI AATT 2 cut(s) 181, 402
Tru1I TTAA 2 cut(s) 117, 222
Tru9I TTAA 2 cut(s) 117, 222
TscAI CASTG 1 cut(s) 133
TseI GCWGC 3 cut(s) 35, 71, 260
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 230, 295
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.