Rh5DG472800

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000321
Physical Location & Seq
Forward (+)
74736489 .. 74737205
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG472800.1

Sequence Viewer

Length: 537 bp
ATGTCTAGGAAAGGCTATGCTAATTTGGAAGAGGAACTAAAACTGGAGTTAGGAACTGAAGAAGATATTGACAGAGCTATATTATGGAAGAAAGGGCGTGTCTATAAAGAGGGTAACTATTTGAGTGAGACAATCAAACAGCGTGTTGAGAAAATTGATGCTTTAAAGAAAGATGTGAGAGAGGGAATTGTGTCCGCTGTTGGTCGGAACGACATTTTGACCCAAGCTTTGGAGACACTTGAGCAACCAGGTCGTGTAAGAGGTGTTGGACAATTTCTTACACACAAGGTGTACTTTAATACATCTAGGTACAAGCCTACAACCAAGACACAAATGTTGGAACAACCGTTGGAATTGATGCTAAACCAGATGAACTTGTTTGCTTTATTATTGGATCCTGAGAAGTTGGATCCAGCTAAACTAAGCATCATGCGAGACATTTTTAGATCTAGTAATGGATCTGAAAAAGCTAGCTGCTCAGTCGACAAGGAGAAAAATCAGTCTTCTAATAGGTCCAATCTGTTAGTCTTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

178

Amino Acids

20.42

Weight (kDa)

9.1

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 1 cut(s) 483
AciI CCGC 1 cut(s) 195
AclWI GGATC 5 cut(s) 389, 402, 404, 417, 466
AcuI CTGAAG 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 289
AfaI GTAC 2 cut(s) 293, 311
AfiI CCNNNNNNNGG 1 cut(s) 229
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 5 cut(s) 77, 227, 416, 470, 474
AluI AGCT 5 cut(s) 77, 227, 416, 470, 474
Alw26I GTCTC 3 cut(s) 122, 227, 429
AlwI GGATC 5 cut(s) 389, 402, 404, 417, 466
ApeKI GCWGC 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AspS9I GGNCC 1 cut(s) 513
AsuNHI GCTAGC 1 cut(s) 470
AvaII GGWCC 1 cut(s) 513
BamHI GGATCC 2 cut(s) 394, 409
BbsI GAAGAC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 461
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 3 cut(s) 122, 227, 429
BfaI CTAG 4 cut(s) 6, 306, 450, 471
BglII AGATCT 1 cut(s) 446
BisI GCNGC 1 cut(s) 475
BlsI GCNGC 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 2 cut(s) 396, 411
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 3 cut(s) 148, 348, 435
BmtI GCTAGC 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 390, 492
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 3 cut(s) 122, 227, 429
Bsp143I GATC 4 cut(s) 394, 409, 446, 458
BspACI CCGC 1 cut(s) 195
BspCNI CTCAG 2 cut(s) 391, 491
BspLI GGNNCC 2 cut(s) 396, 411
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 5 cut(s) 389, 402, 404, 417, 466
BsrI ACTGG 1 cut(s) 48
BssMI GATC 4 cut(s) 394, 409, 446, 458
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 3 cut(s) 399, 422, 478
BstKTI GATC 4 cut(s) 397, 412, 449, 461
BstMAI GTCTC 3 cut(s) 122, 227, 429
BstMBI GATC 4 cut(s) 394, 409, 446, 458
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 4 cut(s) 394, 409, 446, 458
BstYI RGATCY 4 cut(s) 394, 409, 446, 458
Cac8I GCNNGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 513
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 2 cut(s) 292, 310
CviAII CATG 1 cut(s) 430
CviJI RGCY 7 cut(s) 15, 77, 227, 316, 416, 470, 474
CviKI_1 RGCY 7 cut(s) 15, 77, 227, 316, 416, 470, 474
CviQI GTAC 2 cut(s) 292, 310
DdeI CTNAG 3 cut(s) 399, 422, 478
DpnI GATC 4 cut(s) 396, 411, 448, 460
DpnII GATC 4 cut(s) 394, 409, 446, 458
DraI TTTAAA 1 cut(s) 165
DraIII CACNNNGTG 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 1 cut(s) 433
FaiI YATR 5 cut(s) 18, 80, 85, 105, 431
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 1 cut(s) 429
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 475
Fsp4HI GCNGC 1 cut(s) 475
FspBI CTAG 4 cut(s) 6, 306, 450, 471
GluI GCNGC 1 cut(s) 475
GsuI CTGGAG 1 cut(s) 65
Hin1II CATG 1 cut(s) 433
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 225
Hpy166II GTNNAC 2 cut(s) 292, 484
Hpy188I TCNGA 2 cut(s) 207, 463
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 2 cut(s) 292, 484
HpyCH4III ACNGT 1 cut(s) 348
HpyF3I CTNAG 3 cut(s) 399, 422, 478
Hsp92II CATG 1 cut(s) 433
Kzo9I GATC 4 cut(s) 394, 409, 446, 458
LpnPI CCDG 6 cut(s) 29, 234, 261, 380, 411, 426
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 3 cut(s) 148, 348, 435
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 4 cut(s) 6, 306, 450, 471
MaeIII GTNAC 1 cut(s) 113
MalI GATC 4 cut(s) 396, 411, 448, 460
MboI GATC 4 cut(s) 394, 409, 446, 458
MboII GAAGA 5 cut(s) 41, 71, 74, 100, 495
MflI RGATCY 4 cut(s) 394, 409, 446, 458
MluCI AATT 5 cut(s) 22, 153, 186, 272, 353
MmeI TCCRAC 5 cut(s) 185, 247, 318, 330, 387
MnlI CCTC 4 cut(s) 25, 103, 175, 254
MseI TTAA 2 cut(s) 164, 297
MspA1I CMGCKG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
NdeII GATC 4 cut(s) 394, 409, 446, 458
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 1 cut(s) 433
NlaIV GGNNCC 2 cut(s) 396, 411
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 396, 411
PspPI GGNCC 1 cut(s) 513
PsuI RGATCY 4 cut(s) 394, 409, 446, 458
RsaI GTAC 2 cut(s) 293, 311
RsaNI GTAC 2 cut(s) 292, 310
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 164, 297
SatI GCNGC 1 cut(s) 475
Sau3AI GATC 4 cut(s) 394, 409, 446, 458
Sau96I GGNCC 1 cut(s) 513
ScrFI CCNGG 1 cut(s) 249
SexAI ACCWGGT 1 cut(s) 247
SfaNI GCATC 3 cut(s) 148, 348, 435
SinI GGWCC 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 5 cut(s) 22, 153, 186, 272, 353
SsiI CCGC 1 cut(s) 195
SspMI CTAG 4 cut(s) 6, 306, 450, 471
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 483, 532
TasI AATT 5 cut(s) 22, 153, 186, 272, 353
TatI WGTACW 1 cut(s) 291
Tru1I TTAA 2 cut(s) 164, 297
Tru9I TTAA 2 cut(s) 164, 297
TseI GCWGC 1 cut(s) 474
TspDTI ATGAA 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 4 cut(s) 6, 306, 450, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.