Prupe.6G157700_v2.0.a1

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000321
Physical Location & Seq
Reverse (-)
14147887 .. 14148353
467 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G157700.1

Sequence Viewer

Length: 405 bp
ATGAAACCATCAAAAGAGAAACCAGAGAACCACTCAAATATACCCCAATCAAATGAAGCTTCTTCATCACTAATACCTGTTACCACCACGAGTGAAGCTAAAAGAAAGCGTGGTCCAACAGAAATGCATAAAATTCAAAAGAAAAAAAAGAAGGGGAAAAAGTTAGTAGTTGAGTTTAGCCCAAAAGGAGAAGCGATGGGGAAGGTGGGCAAACAATATGCATCATACACAGGTGTAATGGCTCGAACCATAATCCCCATACATTTAAACAATTGGGCAGCAGTGGATGACCATTTGAAGGAGAAAATCTGGACAGAAATAACGATCAAGATTCCTTTGGTTTTTGTCTTTGGGGCATTTAGTTTGGCATTCAAATACTCATGGCCATATAGGTATAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

135

Amino Acids

15.26

Weight (kDa)

10.0

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 3 cut(s) 137, 298, 373
AluBI AGCT 2 cut(s) 59, 98
AluI AGCT 2 cut(s) 59, 98
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 385
BauI CACGAG 1 cut(s) 88
BbvI GCAGC 1 cut(s) 290
BccI CCATC 2 cut(s) 16, 190
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmsI GCATC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 17, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 290
BshFI GGCC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 298
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 324
BspANI GGCC 1 cut(s) 385
BssMI GATC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 1 cut(s) 327
BstMBI GATC 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 385
BtgZI GCGATG 1 cut(s) 209
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 1 cut(s) 381
CviJI RGCY 5 cut(s) 59, 98, 180, 242, 385
CviKI_1 RGCY 5 cut(s) 59, 98, 180, 242, 385
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
DraI TTTAAA 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 113
EcoT22I ATGCAT 2 cut(s) 129, 223
FaeI CATG 1 cut(s) 384
FatI CATG 1 cut(s) 380
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 385
Hin1II CATG 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 1 cut(s) 331
Hpy188III TCNNGA 2 cut(s) 310, 328
HpyAV CCTTC 3 cut(s) 145, 196, 292
HpyCH4V TGCA 2 cut(s) 127, 221
Hsp92II CATG 1 cut(s) 384
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 4 cut(s) 36, 90, 216, 295
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 1 cut(s) 54
MfeI CAATTG 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 385
MluCI AATT 3 cut(s) 132, 271, 398
MluNI TGGCCA 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 140
Mox20I TGGCCA 1 cut(s) 385
Mph1103I ATGCAT 2 cut(s) 129, 223
MscI TGGCCA 1 cut(s) 385
MseI TTAA 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 385
MunI CAATTG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 368
NdeII GATC 1 cut(s) 324
NlaIII CATG 1 cut(s) 384
NsiI ATGCAT 2 cut(s) 129, 223
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 113
SetI ASST 6 cut(s) 61, 79, 100, 207, 235, 395
SfaNI GCATC 1 cut(s) 230
SinI GGWCC 1 cut(s) 113
Sse9I AATT 3 cut(s) 132, 271, 398
TaqI TCGA 1 cut(s) 244
TasI AATT 3 cut(s) 132, 271, 398
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 288
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 17, 54, 69
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 132
Zsp2I ATGCAT 2 cut(s) 129, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.