RLG00000018830

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000321
Physical Location & Seq
Reverse (-)
37215369 .. 37217122
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018830

Sequence Viewer

Length: 993 bp
ATGTCTGCTATTGGTCGGAACGACATTTTGACCCAAGCTTTGGAGACACCTGAGCAACTAGACCGTGTAAGAGGTGCTGGACAATTTGTTACACACAAGGTGTACTTTAATACATCTAGATACAAGCCTGCAACCAAGACACAAATGTTGGAACAGCAATTGGAATTGATGCAAAACCAGATGAACTTGTTTGCTTCATTATTAGATCCTGAGAAGTTGGATCCAGCTAAACTAAGCATGATGCGAGACATTTTTAGATCTAGTAATGGATCTAAAAAAGCTAGCTGCTCAGTCGACAAGGAGAAACATCAGTCTTCTAAGGGGGAGGTATCTAATGTGGCATCTAAGAAAGAAATTGAGAAAAAAGCTACTACAAAAAAGGCTCGAAAAGTGGATGATATTCCATCTCGGATTGACAGCAGTAGAGAGAGCAAGAAGGGAAATAAATGCAAGCTAGTTGTAGACACTAAAGATAACATTGTTGCAATGGGAACTATAATAATGTTGGAAGGGCCGATACATGGAGTGCCCCTAGGAGCAGAAAATGTACGTATCTCAGTTGATGTGCCTATCAAGGAAGGTGCTCATCTCCCAAACCCAAATGTGTCAGGTGACATATTTACAAACTCAATGAGCACTCACAAGTCTTCGAGTAAAATACCATGCAAACAAGCAGCATACAAGATGCCGGTGTCTGTGCATCTTCTACTGCATTTGGCAAGAACAATGGATGAATCTATAGCAGTGTCGGTCCCAATGGAAGAAGATCCTGGCCGCATCTCTAATGAAGTTGTAAAGGTTGAGGCTAGATCATGTGCACTATCACTTAGATTAGAGTCTGCACAAGTAGAACAATTAATTCTTGCGCCTTATAATACAGGGAATCATTGGTTGTTGGCTGCCATTAACCCATTTACTGCATTGGTATATTACTTCGACCCATTGAGTAACATTAACATCAATCCAAGAATGAAGAACATCGTAGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

331

Amino Acids

36.55

Weight (kDa)

9.09

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 873
AccB7I CCANNNNNTGG 1 cut(s) 40
AccI GTMKAC 2 cut(s) 294, 462
AciI CCGC 1 cut(s) 775
AclWI GGATC 5 cut(s) 200, 215, 228, 277, 761
AcoI YGGCCR 1 cut(s) 772
AdeI CACNNNGTG 1 cut(s) 100
AfaI GTAC 2 cut(s) 104, 549
AfiI CCNNNNNNNGG 2 cut(s) 40, 521
AjnI CCWGG 1 cut(s) 769
AluBI AGCT 6 cut(s) 38, 227, 281, 285, 368, 454
AluI AGCT 6 cut(s) 38, 227, 281, 285, 368, 454
Alw21I GWGCWC 3 cut(s) 586, 638, 820
Alw26I GTCTC 2 cut(s) 38, 240
Alw44I GTGCAC 1 cut(s) 816
AlwI GGATC 5 cut(s) 200, 215, 228, 277, 761
AoxI GGCC 2 cut(s) 512, 772
ApaLI GTGCAC 1 cut(s) 816
ApeKI GCWGC 3 cut(s) 285, 674, 899
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AseI ATTAAT 1 cut(s) 857
AspA2I CCTAGG 1 cut(s) 532
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 2 cut(s) 512, 751
AsuHPI GGTGA 1 cut(s) 623
AsuNHI GCTAGC 1 cut(s) 281
AvaII GGWCC 1 cut(s) 751
AvrII CCTAGG 1 cut(s) 532
BaeGI GKGCMC 2 cut(s) 531, 820
BamHI GGATCC 1 cut(s) 220
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BbsI GAAGAC 2 cut(s) 306, 639
Bbv12I GWGCWC 3 cut(s) 586, 638, 820
BbvI GCAGC 3 cut(s) 272, 686, 886
BccI CCATC 1 cut(s) 412
BciT130I CCWGG 1 cut(s) 771
BcoDI GTCTC 2 cut(s) 38, 240
BfaI CTAG 7 cut(s) 59, 117, 261, 282, 455, 533, 807
BfmI CTRYAG 1 cut(s) 738
BglII AGATCT 1 cut(s) 257
BisI GCNGC 4 cut(s) 286, 675, 775, 900
BlnI CCTAGG 1 cut(s) 532
BlsI GCNGC 4 cut(s) 287, 676, 776, 901
Bme1390I CCNGG 1 cut(s) 771
Bme18I GGWCC 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 512, 751
BmiI GGNNCC 2 cut(s) 222, 753
BmrFI CCNGG 1 cut(s) 771
BmsI GCATC 6 cut(s) 159, 231, 350, 675, 709, 786
BmtI GCTAGC 1 cut(s) 285
BpiI GAAGAC 2 cut(s) 306, 639
Bpu10I CCTNAGC 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 532
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 521
Bse118I RCCGGY 1 cut(s) 688
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 1 cut(s) 532
BseGI GGATG 2 cut(s) 400, 736
BseLI CCNNNNNNNGG 2 cut(s) 40, 521
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 4 cut(s) 42, 201, 303, 570
BseSI GKGCMC 2 cut(s) 531, 820
BseXI GCAGC 3 cut(s) 272, 686, 886
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 2 cut(s) 514, 774
BsiHKAI GWGCWC 3 cut(s) 586, 638, 820
BsiSI CCGG 1 cut(s) 689
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 2 cut(s) 40, 521
BsmAI GTCTC 2 cut(s) 38, 240
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 2 cut(s) 514, 774
Bsp1286I GDGCHC 4 cut(s) 531, 586, 638, 820
Bsp143I GATC 6 cut(s) 205, 220, 257, 269, 766, 809
BspACI CCGC 1 cut(s) 775
BspANI GGCC 2 cut(s) 514, 774
BspCNI CTCAG 4 cut(s) 43, 202, 302, 569
BspLI GGNNCC 2 cut(s) 222, 753
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 5 cut(s) 200, 215, 228, 277, 761
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 688
BssAI RCCGGY 1 cut(s) 688
BssECI CCNNGG 1 cut(s) 532
BssMI GATC 6 cut(s) 205, 220, 257, 269, 766, 809
BssT1I CCWWGG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 551
BstC8I GCNNGC 3 cut(s) 129, 283, 452
BstDEI CTNAG 8 cut(s) 51, 210, 233, 289, 318, 345, 556, 827
BstF5I GGATG 2 cut(s) 400, 736
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 6 cut(s) 208, 223, 260, 272, 769, 812
BstMAI GTCTC 2 cut(s) 38, 240
BstMBI GATC 6 cut(s) 205, 220, 257, 269, 766, 809
BstNI CCWGG 1 cut(s) 771
BstSCI CCNGG 1 cut(s) 769
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 2 cut(s) 531, 820
BstSNI TACGTA 1 cut(s) 551
BstV1I GCAGC 3 cut(s) 272, 686, 886
BstV2I GAAGAC 2 cut(s) 306, 639
BstX2I RGATCY 5 cut(s) 205, 220, 257, 269, 766
BstYI RGATCY 5 cut(s) 205, 220, 257, 269, 766
BsuRI GGCC 2 cut(s) 514, 774
BtsCI GGATG 2 cut(s) 400, 736
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 1 cut(s) 750
Cac8I GCNNGC 3 cut(s) 129, 283, 452
CfoI GCGC 1 cut(s) 868
Cfr10I RCCGGY 1 cut(s) 688
Cfr13I GGNCC 2 cut(s) 512, 751
Csp6I GTAC 2 cut(s) 103, 548
CviAII CATG 4 cut(s) 238, 521, 663, 813
CviQI GTAC 2 cut(s) 103, 548
DdeI CTNAG 8 cut(s) 51, 210, 233, 289, 318, 345, 556, 827
DpnI GATC 6 cut(s) 207, 222, 259, 271, 768, 811
DpnII GATC 6 cut(s) 205, 220, 257, 269, 766, 809
DraIII CACNNNGTG 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 772
Eco105I TACGTA 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 532
FaeI CATG 4 cut(s) 241, 524, 666, 816
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 1 cut(s) 737
FatI CATG 4 cut(s) 237, 520, 662, 812
FblI GTMKAC 2 cut(s) 294, 462
Fnu4HI GCNGC 4 cut(s) 286, 675, 775, 900
FokI GGATG 2 cut(s) 407, 743
Fsp4HI GCNGC 4 cut(s) 286, 675, 775, 900
FspBI CTAG 7 cut(s) 59, 117, 261, 282, 455, 533, 807
GlaI GCGC 1 cut(s) 867
GluI GCNGC 4 cut(s) 286, 675, 775, 900
HaeIII GGCC 2 cut(s) 514, 774
HapII CCGG 1 cut(s) 689
HhaI GCGC 1 cut(s) 868
Hin1II CATG 4 cut(s) 241, 524, 666, 816
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 3 cut(s) 734, 836, 883
HpaII CCGG 1 cut(s) 689
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 4 cut(s) 103, 295, 463, 818
Hpy188I TCNGA 2 cut(s) 18, 411
Hpy188III TCNNGA 2 cut(s) 117, 209
Hpy8I GTNNAC 4 cut(s) 103, 295, 463, 818
HpyAV CCTTC 3 cut(s) 430, 503, 572
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 550
HpyF3I CTNAG 8 cut(s) 51, 210, 233, 289, 318, 345, 556, 827
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 4 cut(s) 241, 524, 666, 816
HspAI GCGC 1 cut(s) 866
Kzo9I GATC 6 cut(s) 205, 220, 257, 269, 766, 809
LmnI GCTCC 1 cut(s) 536
Lsp1109I GCAGC 3 cut(s) 272, 686, 886
LweI GCATC 6 cut(s) 159, 231, 350, 675, 709, 786
MaeI CTAG 7 cut(s) 59, 117, 261, 282, 455, 533, 807
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 3 cut(s) 88, 611, 947
MalI GATC 6 cut(s) 207, 222, 259, 271, 768, 811
MboI GATC 6 cut(s) 205, 220, 257, 269, 766, 809
MboII GAAGA 6 cut(s) 306, 639, 695, 773, 776, 985
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 5 cut(s) 205, 220, 257, 269, 766
MhlI GDGCHC 4 cut(s) 531, 586, 638, 820
MluCI AATT 6 cut(s) 83, 158, 164, 354, 854, 858
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 3 cut(s) 129, 198, 486
MnlI CCTC 3 cut(s) 65, 319, 796
MseI TTAA 4 cut(s) 108, 857, 906, 954
MspI CCGG 1 cut(s) 689
MspR9I CCNGG 1 cut(s) 771
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 771
NdeII GATC 6 cut(s) 205, 220, 257, 269, 766, 809
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 4 cut(s) 241, 524, 666, 816
NlaIV GGNNCC 2 cut(s) 222, 753
NmuCI GTSAC 1 cut(s) 611
PfeI GAWTC 2 cut(s) 734, 883
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 4 cut(s) 287, 676, 776, 901
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
Ppu21I YACGTR 1 cut(s) 551
PshBI ATTAAT 1 cut(s) 857
PsiI TTATAA 1 cut(s) 873
Psp6I CCWGG 1 cut(s) 769
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 2 cut(s) 222, 753
PspPI GGNCC 2 cut(s) 512, 751
PsuI RGATCY 5 cut(s) 205, 220, 257, 269, 766
RsaI GTAC 2 cut(s) 104, 549
RsaNI GTAC 2 cut(s) 103, 548
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 4 cut(s) 108, 857, 906, 954
SatI GCNGC 4 cut(s) 286, 675, 775, 900
Sau3AI GATC 6 cut(s) 205, 220, 257, 269, 766, 809
Sau96I GGNCC 2 cut(s) 512, 751
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 1 cut(s) 771
SduI GDGCHC 4 cut(s) 531, 586, 638, 820
SfaNI GCATC 6 cut(s) 159, 231, 350, 675, 709, 786
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 751
SnaBI TACGTA 1 cut(s) 551
Sse9I AATT 6 cut(s) 83, 158, 164, 354, 854, 858
SsiI CCGC 1 cut(s) 775
SspMI CTAG 7 cut(s) 59, 117, 261, 282, 455, 533, 807
StyD4I CCNGG 1 cut(s) 769
StyI CCWWGG 1 cut(s) 532
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 553
TaqI TCGA 4 cut(s) 294, 385, 650, 936
TaqII GACCGA 1 cut(s) 739
TasI AATT 6 cut(s) 83, 158, 164, 354, 854, 858
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 2 cut(s) 734, 883
Tru1I TTAA 4 cut(s) 108, 857, 906, 954
Tru9I TTAA 4 cut(s) 108, 857, 906, 954
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 3 cut(s) 285, 674, 899
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 5 cut(s) 186, 197, 747, 801, 986
TspRI CASTG 1 cut(s) 750
Van91I CCANNNNNTGG 1 cut(s) 40
VneI GTGCAC 1 cut(s) 816
VpaK11BI GGWCC 1 cut(s) 751
VspI ATTAAT 1 cut(s) 857
XbaI TCTAGA 1 cut(s) 116
XmaJI CCTAGG 1 cut(s) 532
XmiI GTMKAC 2 cut(s) 294, 462
XspI CTAG 7 cut(s) 59, 117, 261, 282, 455, 533, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.