Rroxscaffold_5G00362390

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000321
Physical Location & Seq
Forward (+)
43362281 .. 43367493
5213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362390.1

Sequence Viewer

Length: 288 bp
ATGAAGAACATCGTGGAGCTTGCCATTAAAATGTTTAATGCTCAAAAGGGAAGAAAGAATCGTAAAAAAGTTCATTGGGAGGTGGTTAAGTGTCCCGGACAACCTGGATCGGTGGAGTGTGGATATTATGTCATGAAATACATGAAAGAAATTATTGGAACTCCAAGCAGCTCAATTTTAAATATGTTTGAGGGAAAAGAGACATACACTCAAGAGGAGATTGATGTAGTTCGAGTAGAGTGGGCAGAGCAAGTTGATGGATATATCCAAGATGAAGTAAAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

95

Amino Acids

11.07

Weight (kDa)

6.58

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 10 - 90 6.3e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 19, 171
AluI AGCT 2 cut(s) 19, 171
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 96
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 105
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 286
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 2 cut(s) 96, 105
BmrFI CCNGG 2 cut(s) 96, 105
BpuEI CTTGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 107
BspHI TCATGA 1 cut(s) 132
BspPI GGATC 1 cut(s) 115
BssMI GATC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 21
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 94, 103
BstV1I GCAGC 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 132
CviAII CATG 2 cut(s) 133, 142
CviJI RGCY 2 cut(s) 19, 171
CviKI_1 RGCY 2 cut(s) 19, 171
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
DraI TTTAAA 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 136, 145
FaiI YATR 6 cut(s) 129, 134, 143, 185, 205, 264
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 132, 141
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 1 cut(s) 286
GluI GCNGC 1 cut(s) 169
HapII CCGG 1 cut(s) 96
Hin1II CATG 2 cut(s) 136, 145
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 133, 212
Hsp92II CATG 2 cut(s) 136, 145
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 90, 109, 117
Lsp1109I GCAGC 1 cut(s) 180
MaeI CTAG 1 cut(s) 286
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 2 cut(s) 16, 63
MluCI AATT 2 cut(s) 150, 174
MnlI CCTC 3 cut(s) 73, 184, 208
MseI TTAA 4 cut(s) 27, 36, 87, 179
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 96, 105
MvaI CCWGG 1 cut(s) 105
NciI CCSGG 1 cut(s) 96
NdeII GATC 1 cut(s) 107
NlaIII CATG 2 cut(s) 136, 145
PagI TCATGA 1 cut(s) 132
PfeI GAWTC 1 cut(s) 58
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 4 cut(s) 27, 36, 87, 179
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 96, 105
SetI ASST 4 cut(s) 21, 84, 106, 173
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 2 cut(s) 150, 174
SspMI CTAG 1 cut(s) 286
StyD4I CCNGG 2 cut(s) 94, 103
TaqI TCGA 1 cut(s) 232
TasI AATT 2 cut(s) 150, 174
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 4 cut(s) 27, 36, 87, 179
Tru9I TTAA 4 cut(s) 27, 36, 87, 179
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 5 cut(s) 17, 62, 149, 158, 288
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.