RchiOBHm_Chr4g0417951

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000321
Physical Location & Seq
Forward (+)
43273329 .. 43273972
644 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38798

Sequence Viewer

Length: 468 bp
ATGCCTGTGTCCGTACATCTTCTACTGCGTTTGGCAAGAACAATAGATGAATCTATAGCTATGTCGGTCCCAATGGAAGATGGTGTGTTTGGCAACGACCACAATACATTCATAAACAGTAATGACATTATCCAATTTTGTTTGATGCAGCCAATATCGACTATTTGCATTTCTATCTACATGAGACACCTCTGGTCATTGTTGAAAATGAAGGAAGAGGATCACTTGTATGCATTTGTGGATCCTAGCCGCATCTCTAATGAAGCTGGAAAGGTTGAGGCAAGATCATGTGCGCTATCACTAAGATTAGAGTCCGCCCAATTAGATCAGTTAATTCTTGCTCCTTATAATACAGGGAATCATTGGTTGTTGGCTGCCATTAACCCGTTTACTGCATTGGTGTATTATTTCGACCCATTGGGTAATACTAACATCAATCCAGGAATGAAGAATATCGTAGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

155

Amino Acids

17.48

Weight (kDa)

5.21

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AciI CCGC 2 cut(s) 250, 315
AclWI GGATC 3 cut(s) 228, 236, 249
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 3 cut(s) 59, 266, 463
AluI AGCT 3 cut(s) 59, 266, 463
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 3 cut(s) 228, 236, 249
ApeKI GCWGC 2 cut(s) 148, 374
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
BamHI GGATCC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 160, 361
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 3 cut(s) 149, 250, 375
BlsI GCNGC 3 cut(s) 150, 251, 376
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 69, 243
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 135, 261
BseBI CCWGG 1 cut(s) 441
BseXI GCAGC 2 cut(s) 160, 361
BslFI GGGAC 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 53
Bsp143I GATC 4 cut(s) 220, 241, 284, 325
BspACI CCGC 2 cut(s) 250, 315
BspLI GGNNCC 2 cut(s) 69, 243
BspPI GGATC 3 cut(s) 228, 236, 249
BssMI GATC 4 cut(s) 220, 241, 284, 325
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 302
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 4 cut(s) 223, 244, 287, 328
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 4 cut(s) 220, 241, 284, 325
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 160, 361
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 181, 288
CviJI RGCY 6 cut(s) 59, 151, 249, 266, 374, 463
CviKI_1 RGCY 6 cut(s) 59, 151, 249, 266, 374, 463
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 302
DpnI GATC 4 cut(s) 222, 243, 286, 327
DpnII GATC 4 cut(s) 220, 241, 284, 325
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 2 cut(s) 184, 291
FaiI YATR 7 cut(s) 56, 62, 113, 182, 231, 289, 348
FaqI GGGAC 1 cut(s) 53
FatI CATG 2 cut(s) 180, 287
Fnu4HI GCNGC 3 cut(s) 149, 250, 375
Fsp4HI GCNGC 3 cut(s) 149, 250, 375
FspBI CTAG 1 cut(s) 246
GlaI GCGC 1 cut(s) 294
GluI GCNGC 3 cut(s) 149, 250, 375
HhaI GCGC 1 cut(s) 295
Hin1II CATG 2 cut(s) 184, 291
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 3 cut(s) 50, 311, 358
Hpy166II GTNNAC 1 cut(s) 390
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 4 cut(s) 148, 168, 233, 395
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 2 cut(s) 184, 291
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 4 cut(s) 220, 241, 284, 325
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 18, 178, 252, 339, 426, 453
Lsp1109I GCAGC 2 cut(s) 160, 361
LweI GCATC 2 cut(s) 135, 261
MaeI CTAG 1 cut(s) 246
MalI GATC 4 cut(s) 222, 243, 286, 327
MboI GATC 4 cut(s) 220, 241, 284, 325
MboII GAAGA 4 cut(s) 11, 89, 227, 460
MflI RGATCY 1 cut(s) 241
MluCI AATT 3 cut(s) 134, 320, 333
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 3 cut(s) 200, 211, 271
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 2 cut(s) 332, 381
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
NdeII GATC 4 cut(s) 220, 241, 284, 325
NlaIII CATG 2 cut(s) 184, 291
NlaIV GGNNCC 2 cut(s) 69, 243
NsiI ATGCAT 1 cut(s) 235
PfeI GAWTC 2 cut(s) 50, 358
PfoI TCCNGGA 1 cut(s) 439
PkrI GCNGC 3 cut(s) 150, 251, 376
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 2 cut(s) 69, 243
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 332, 381
SatI GCNGC 3 cut(s) 149, 250, 375
Sau3AI GATC 4 cut(s) 220, 241, 284, 325
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 441
SetI ASST 5 cut(s) 61, 192, 268, 276, 465
SfaNI GCATC 2 cut(s) 135, 261
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 3 cut(s) 134, 320, 333
SsiI CCGC 2 cut(s) 250, 315
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 158, 411
TaqII GACCGA 1 cut(s) 55
TasI AATT 3 cut(s) 134, 320, 333
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 2 cut(s) 50, 358
Tru1I TTAA 2 cut(s) 332, 381
Tru9I TTAA 2 cut(s) 332, 381
TseI GCWGC 2 cut(s) 148, 374
TspDTI ATGAA 5 cut(s) 63, 100, 224, 276, 461
VpaK11BI GGWCC 1 cut(s) 67
XspI CTAG 1 cut(s) 246
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.